Wall clock time and date at job start Tue Mar 31 2020 05:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53120 * 109.52468 * 2 1 4 4 C 1.53035 * 109.27810 * 182.37916 * 3 2 1 5 5 N 1.46845 * 109.52519 * 59.18246 * 4 3 2 6 6 C 1.46903 * 110.99816 * 174.16220 * 5 4 3 7 7 C 1.52998 * 109.46823 * 169.99994 * 6 5 4 8 8 N 1.46898 * 109.47227 * 174.04120 * 7 6 5 9 9 C 1.48560 * 111.00176 * 175.81603 * 8 7 6 10 10 C 1.54381 * 104.59626 * 200.95993 * 9 8 7 11 11 C 1.54267 * 105.05878 * 23.85582 * 10 9 8 12 12 O 1.42894 * 110.32596 * 118.99894 * 11 10 9 13 13 C 1.50702 * 110.32169 * 241.10206 * 11 10 9 14 14 H 1.08004 * 120.00014 * 5.37210 * 13 11 10 15 15 C 1.37880 * 119.99818 * 185.63960 * 13 11 10 16 16 N 1.31516 * 119.99932 * 190.76525 * 15 13 11 17 17 Si 1.86796 * 119.99913 * 10.76633 * 15 13 11 18 18 H 1.48502 * 109.46837 * 90.21357 * 17 15 13 19 19 H 1.48500 * 109.47257 * 210.21001 * 17 15 13 20 20 H 1.48501 * 109.47259 * 330.21469 * 17 15 13 21 21 C 1.48564 * 110.99911 * 60.39784 * 8 7 6 22 22 C 1.46846 * 111.19603 * 298.25576 * 5 4 3 23 23 C 1.53033 * 109.52261 * 61.74074 * 22 5 4 24 24 H 1.09004 * 109.47206 * 59.99754 * 1 2 3 25 25 H 1.09003 * 109.47112 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46850 * 299.99563 * 1 2 3 27 27 H 1.08999 * 109.52708 * 120.12916 * 2 1 3 28 28 H 1.09002 * 109.49803 * 62.43649 * 3 2 1 29 29 H 1.08997 * 109.50241 * 302.32337 * 3 2 1 30 30 H 1.09000 * 109.46202 * 299.15765 * 4 3 2 31 31 H 1.09006 * 109.45309 * 179.19196 * 4 3 2 32 32 H 1.08995 * 109.47682 * 49.99549 * 6 5 4 33 33 H 1.08997 * 109.46855 * 289.99222 * 6 5 4 34 34 H 1.08999 * 109.47585 * 54.04202 * 7 6 5 35 35 H 1.09004 * 109.47198 * 294.03993 * 7 6 5 36 36 H 1.09001 * 110.40960 * 82.18760 * 9 8 7 37 37 H 1.08994 * 110.51548 * 319.79130 * 9 8 7 38 38 H 1.09000 * 110.32876 * 264.96064 * 10 9 8 39 39 H 1.08994 * 110.40814 * 142.79197 * 10 9 8 40 40 H 0.96695 * 114.00061 * 67.01922 * 12 11 10 41 41 H 0.96993 * 120.00228 * 180.02562 * 16 15 13 42 42 H 1.09002 * 110.40998 * 40.26472 * 21 8 7 43 43 H 1.09002 * 110.41046 * 277.82236 * 21 8 7 44 44 H 1.09004 * 109.46389 * 181.75894 * 22 5 4 45 45 H 1.09004 * 109.46029 * 301.72908 * 22 5 4 46 46 H 1.09007 * 109.50507 * 180.87954 * 23 22 5 47 47 H 1.09001 * 109.50523 * 60.76228 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5709 1.4370 -0.0600 5 7 4.0116 0.7425 -1.2765 6 6 5.4686 0.8373 -1.4382 7 6 5.9185 -0.0961 -2.5639 8 7 7.3508 0.1028 -2.8220 9 6 7.8467 -0.8579 -3.8409 10 6 9.3732 -0.9100 -3.6161 11 6 9.5773 -0.4775 -2.1494 12 8 10.1965 -1.5276 -1.4039 13 6 10.4150 0.7736 -2.0844 14 1 10.7028 1.2786 -2.9946 15 6 10.8184 1.2703 -0.8631 16 7 11.3631 2.4649 -0.7866 17 14 10.5914 0.2466 0.6828 18 1 11.8003 -0.5864 0.9067 19 1 10.3876 1.1460 1.8467 20 1 9.4061 -0.6338 0.5238 21 6 8.1570 -0.2005 -1.6115 22 6 3.5721 -0.6586 -1.2767 23 6 2.0430 -0.7151 -1.2530 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8943 -0.5157 0.8885 28 1 1.7152 1.9450 0.9109 29 1 1.6456 1.9697 -0.8682 30 1 3.9666 0.9224 0.8157 31 1 3.9378 2.4633 -0.0746 32 1 5.9571 0.5469 -0.5082 33 1 5.7405 1.8632 -1.6866 34 1 5.3521 0.1259 -3.4683 35 1 5.7425 -1.1310 -2.2699 36 1 7.6225 -0.4969 -4.8446 37 1 7.4056 -1.8422 -3.6844 38 1 9.8789 -0.2174 -4.2888 39 1 9.7452 -1.9233 -3.7672 40 1 11.1064 -1.7162 -1.6714 41 1 11.6473 2.8143 0.0724 42 1 7.7642 -1.0815 -1.1041 43 1 8.1663 0.6555 -0.9367 44 1 3.9400 -1.1545 -2.1750 45 1 3.9678 -1.1635 -0.3954 46 1 1.7174 -1.7552 -1.2374 47 1 1.6469 -0.2224 -2.1410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:18 Heat of formation + Delta-G solvation = -44.822822 kcal Electronic energy + Delta-G solvation = -23572.760901 eV Core-core repulsion = 20368.983123 eV Total energy + Delta-G solvation = -3203.777778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.48567 -38.49712 -35.74629 -34.47217 -32.28111 -31.31456 -30.75978 -28.61022 -28.13822 -26.12560 -24.48474 -23.51183 -22.45432 -21.27620 -20.32322 -19.78744 -19.21538 -17.13707 -16.31060 -15.54496 -15.24013 -14.92063 -14.83978 -14.65254 -14.33995 -14.17486 -13.79810 -13.41586 -13.27971 -12.90705 -12.63037 -12.47446 -12.18045 -12.13961 -11.92561 -11.82817 -11.65604 -11.38217 -11.29196 -10.95775 -10.83289 -10.80716 -10.67188 -10.37231 -10.31511 -10.23475 -10.00769 -9.89768 -8.97982 -8.64797 -8.35314 -8.24247 -7.86349 -6.11394 -4.18436 3.42720 3.50094 3.69938 3.83405 4.51680 4.54432 4.60810 4.67330 4.69439 5.02070 5.15300 5.21192 5.24470 5.32802 5.33099 5.41539 5.47283 5.49123 5.52192 5.57809 5.67232 5.72802 5.74393 5.78551 5.83979 5.90883 5.92974 5.95681 6.02628 6.03170 6.08652 6.20365 6.26290 6.32336 6.33752 6.51056 6.73940 6.88494 7.11813 7.13737 7.14246 7.43586 7.59739 7.70801 8.27110 8.83649 8.96858 9.52344 10.98776 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022096 B = 0.004286 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.921892 B = 6531.682673 C = 7126.863234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.109 4.109 4 C 0.054 3.946 5 N -0.535 5.535 6 C 0.057 3.943 7 C 0.048 3.952 8 N -0.497 5.497 9 C 0.039 3.961 10 C -0.139 4.139 11 C 0.217 3.783 12 O -0.580 6.580 13 C -0.538 4.538 14 H 0.077 0.923 15 C 0.077 3.923 16 N -0.888 5.888 17 Si 0.909 3.091 18 H -0.288 1.288 19 H -0.315 1.315 20 H -0.254 1.254 21 C 0.059 3.941 22 C 0.047 3.953 23 C -0.110 4.110 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.367 0.633 41 H 0.264 0.736 42 H 0.024 0.976 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.029 0.971 46 H 0.062 0.938 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.049 -6.329 -0.307 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.147 4.147 4 C -0.074 4.074 5 N -0.260 5.260 6 C -0.070 4.070 7 C -0.081 4.081 8 N -0.222 5.222 9 C -0.089 4.089 10 C -0.177 4.177 11 C 0.177 3.823 12 O -0.387 6.387 13 C -0.575 4.575 14 H 0.095 0.905 15 C -0.127 4.127 16 N -0.524 5.524 17 Si 0.741 3.259 18 H -0.214 1.214 19 H -0.245 1.245 20 H -0.179 1.179 21 C -0.069 4.069 22 C -0.081 4.081 23 C -0.148 4.148 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.214 0.786 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.047 0.953 46 H 0.081 0.919 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.717 -5.404 -0.489 19.488 hybrid contribution 0.810 -1.619 1.571 2.397 sum -17.907 -7.023 1.082 19.266 Atomic orbital electron populations 1.21804 0.95230 1.01476 1.01702 1.21198 0.95460 0.96470 0.98321 1.21635 0.94767 0.96295 1.02028 1.22081 0.95522 0.99297 0.90474 1.62003 1.12833 1.13713 1.37486 1.22127 0.85712 1.01810 0.97387 1.22344 0.90482 0.96507 0.98779 1.65329 1.01371 1.47712 1.07768 1.22984 0.96261 0.93291 0.96365 1.22953 0.94242 1.00298 1.00205 1.19844 0.90430 0.86139 0.85861 1.86340 1.31195 1.57581 1.63594 1.21327 1.33181 1.08280 0.94731 0.90462 1.25053 0.93816 0.94234 0.99582 1.69996 1.40754 1.15761 1.25881 0.86434 0.80110 0.78841 0.80518 1.21434 1.24507 1.17895 1.23244 0.93422 0.98523 0.91665 1.22207 0.95463 0.89479 1.00955 1.21645 0.94875 0.99955 0.98293 0.92596 0.92896 0.92861 0.91732 0.91758 0.91035 0.95071 0.90509 0.94717 0.89223 0.90251 0.95431 0.91016 0.95052 0.90735 0.92411 0.78608 0.92663 0.95810 0.89955 0.90227 0.95255 0.91884 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.21 37.16 0.34 -0.78 16 2 C -0.10 -0.89 2.79 -90.50 -0.25 -1.15 16 3 C -0.11 -1.09 5.38 -26.65 -0.14 -1.23 16 4 C 0.05 0.66 5.42 -3.84 -0.02 0.64 16 5 N -0.54 -7.20 4.81 -234.67 -1.13 -8.33 16 6 C 0.06 0.91 4.99 -3.82 -0.02 0.89 16 7 C 0.05 0.77 3.90 -3.83 -0.01 0.75 16 8 N -0.50 -9.72 5.44 -229.97 -1.25 -10.97 16 9 C 0.04 0.69 6.49 -2.18 -0.01 0.68 16 10 C -0.14 -2.74 6.45 -25.34 -0.16 -2.91 16 11 C 0.22 5.03 0.91 -90.39 -0.08 4.95 16 12 O -0.58 -13.02 9.12 -35.23 -0.32 -13.35 16 13 C -0.54 -14.77 8.70 -34.44 -0.30 -15.07 16 14 H 0.08 2.32 7.62 -52.48 -0.40 1.92 16 15 C 0.08 2.21 5.25 -17.82 -0.09 2.11 16 16 N -0.89 -26.92 13.96 55.43 0.77 -26.14 16 17 Si 0.91 23.00 24.80 -169.99 -4.22 18.79 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.32 -8.12 7.11 56.52 0.40 -7.72 16 20 H -0.25 -6.33 5.41 56.52 0.31 -6.02 16 21 C 0.06 1.32 3.08 -2.18 -0.01 1.31 16 22 C 0.05 0.57 4.86 -3.84 -0.02 0.55 16 23 C -0.11 -1.09 5.38 -26.65 -0.14 -1.23 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 32 H 0.03 0.60 7.21 -51.93 -0.37 0.23 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.03 0.43 6.44 -51.93 -0.33 0.10 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.03 0.52 7.91 -51.93 -0.41 0.11 16 38 H 0.07 1.53 7.43 -51.93 -0.39 1.14 16 39 H 0.06 1.03 7.98 -51.93 -0.41 0.61 16 40 H 0.37 7.20 9.04 45.56 0.41 7.61 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.02 0.53 7.90 -51.93 -0.41 0.12 16 43 H 0.08 2.01 6.32 -51.93 -0.33 1.68 16 44 H 0.08 0.96 5.95 -51.93 -0.31 0.65 16 45 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 346.63 15.07 5.22 5.22 Total: -1.00 -30.41 346.63 -9.95 -40.37 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.10 Total: 4.90 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -0.93 Total: -10.48 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -1.61 Total: -45.45 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.32 Total: -13.35 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.22 Total: 18.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.41 -9.95 -40.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.456 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds