Wall clock time and date at job start Tue Mar 31 2020 05:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47347 * 2 1 4 4 C 1.50703 * 109.46904 * 240.00042 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99909 * 4 2 1 6 6 C 1.37875 * 119.99989 * 60.00186 * 4 2 1 7 7 N 1.31511 * 120.00192 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47548 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47233 * 119.99722 * 8 6 4 11 11 H 1.48498 * 109.47163 * 239.99651 * 8 6 4 12 12 C 1.53006 * 109.47481 * 120.00176 * 2 1 3 13 13 N 1.46496 * 109.46811 * 299.99788 * 12 2 1 14 14 C 1.34776 * 119.99846 * 179.97438 * 13 12 2 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99978 * 180.02562 * 14 13 12 17 17 N 1.46906 * 109.47109 * 180.02562 * 16 14 13 18 18 C 1.48539 * 110.99911 * 52.60277 * 17 16 14 19 19 C 1.54934 * 103.22340 * 159.72267 * 18 17 16 20 20 C 1.54597 * 102.92270 * 322.58191 * 19 18 17 21 21 C 1.52997 * 110.31305 * 263.04131 * 20 19 18 22 22 C 1.53010 * 110.39106 * 140.91817 * 20 19 18 23 23 C 1.47897 * 110.99785 * 170.00020 * 17 16 14 24 24 H 1.09004 * 109.46672 * 299.99584 * 1 2 3 25 25 H 1.08992 * 109.47718 * 59.99918 * 1 2 3 26 26 H 1.08996 * 109.47340 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47375 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47045 * 300.00186 * 3 2 1 29 29 H 1.09000 * 109.47140 * 60.00093 * 3 2 1 30 30 H 0.96996 * 120.00505 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46879 * 179.97438 * 12 2 1 32 32 H 1.09001 * 109.46611 * 59.99704 * 12 2 1 33 33 H 0.97002 * 120.00387 * 0.02562 * 13 12 2 34 34 H 1.08992 * 109.46894 * 60.00096 * 16 14 13 35 35 H 1.09004 * 109.47113 * 300.00247 * 16 14 13 36 36 H 1.08998 * 110.66256 * 278.15595 * 18 17 16 37 37 H 1.08992 * 110.66782 * 41.28665 * 18 17 16 38 38 H 1.09000 * 110.72116 * 204.22504 * 19 18 17 39 39 H 1.08998 * 110.87635 * 81.01810 * 19 18 17 40 40 H 1.08993 * 109.47170 * 175.71426 * 21 20 19 41 41 H 1.08996 * 109.46937 * 295.71997 * 21 20 19 42 42 H 1.09005 * 109.46483 * 55.71735 * 21 20 19 43 43 H 1.08999 * 109.46453 * 304.23760 * 22 20 19 44 44 H 1.08997 * 109.46567 * 64.23333 * 22 20 19 45 45 H 1.08997 * 109.46859 * 184.23882 * 22 20 19 46 46 H 1.08997 * 109.92311 * 333.50472 * 23 17 16 47 47 H 1.08994 * 109.92026 * 94.60477 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3211 -1.1203 -4.0080 9 1 3.1462 -2.2870 -3.6039 10 1 1.1658 -1.5867 -4.8161 11 1 3.1463 -0.1874 -4.8166 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5743 -1.4775 3.7807 16 6 1.3742 0.2187 4.9000 17 7 1.8641 -0.4738 6.0994 18 6 3.3382 -0.6495 6.0479 19 6 3.7195 -0.8814 7.5316 20 6 2.7653 0.0720 8.2869 21 6 3.4758 1.3877 8.6108 22 6 2.2593 -0.5875 9.5715 23 6 1.5951 0.3211 7.3173 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7086 1.1613 -3.4843 31 1 3.1300 -0.7216 1.2489 32 1 1.6766 -1.7490 1.2492 33 1 0.9938 0.7578 2.3564 34 1 0.2843 0.2186 4.8996 35 1 1.7375 1.2464 4.9003 36 1 3.6011 -1.5172 5.4429 37 1 3.8195 0.2494 5.6629 38 1 4.7593 -0.6074 7.7099 39 1 3.5398 -1.9166 7.8216 40 1 2.7702 2.0771 9.0743 41 1 4.3005 1.1958 9.2971 42 1 3.8628 1.8275 7.6915 43 1 1.7887 -1.5404 9.3295 44 1 3.0977 -0.7574 10.2470 45 1 1.5313 0.0655 10.0527 46 1 1.5409 1.3801 7.0651 47 1 0.6579 -0.0007 7.7713 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594369020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:32 Heat of formation + Delta-G solvation = -44.399650 kcal Electronic energy + Delta-G solvation = -23042.258018 eV Core-core repulsion = 19838.498589 eV Total energy + Delta-G solvation = -3203.759428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.07193 -38.68319 -36.37957 -34.14600 -33.28398 -30.99832 -29.95732 -27.87533 -27.53901 -25.73773 -25.59789 -25.03691 -23.86079 -21.47716 -20.08285 -19.19056 -18.76445 -16.88055 -15.97074 -15.79070 -15.55718 -15.05326 -14.76639 -14.44301 -14.26020 -13.77383 -13.71149 -13.39067 -13.10335 -12.91079 -12.68774 -12.50441 -12.18461 -11.88293 -11.85847 -11.62493 -11.43062 -11.30934 -11.20637 -10.89062 -10.85387 -10.73456 -10.68638 -10.56889 -10.38589 -10.20293 -9.64328 -9.43115 -9.13627 -8.78259 -8.47990 -8.39032 -8.26224 -6.03046 -4.13021 3.06573 3.26643 3.35260 3.39607 3.54739 4.13012 4.37861 4.42058 4.54180 4.67021 5.06610 5.16888 5.23842 5.24818 5.25459 5.31281 5.35537 5.40819 5.49113 5.51776 5.68935 5.71757 5.78377 5.87455 5.99669 6.07874 6.18889 6.22621 6.32443 6.33236 6.50197 6.78167 6.81344 6.87614 6.90550 6.97745 7.01161 7.06521 7.35249 7.54736 7.68844 8.00089 8.06262 8.15920 8.38046 8.74048 8.88313 9.52980 10.98429 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043108 B = 0.003030 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.375767 B = 9239.827813 C = 9423.389743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.134 3.866 13 N -0.717 5.717 14 C 0.504 3.496 15 O -0.538 6.538 16 C 0.025 3.975 17 N -0.499 5.499 18 C 0.033 3.967 19 C -0.117 4.117 20 C -0.078 4.078 21 C -0.138 4.138 22 C -0.134 4.134 23 C 0.042 3.958 24 H 0.006 0.994 25 H 0.085 0.915 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.259 0.741 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.397 0.603 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.114 0.886 37 H 0.035 0.965 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.044 0.956 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 2.875 19.803 20.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.011 3.989 13 N -0.369 5.369 14 C 0.289 3.711 15 O -0.416 6.416 16 C -0.106 4.106 17 N -0.223 5.223 18 C -0.094 4.094 19 C -0.155 4.155 20 C -0.079 4.079 21 C -0.196 4.196 22 C -0.192 4.192 23 C -0.086 4.086 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.232 0.768 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.132 0.868 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.171 1.775 19.717 19.831 hybrid contribution 0.330 0.892 -1.035 1.406 sum 1.501 2.667 18.682 18.932 Atomic orbital electron populations 1.21827 0.97750 0.99209 1.00064 1.18357 0.92808 0.92714 0.90618 1.21829 0.98536 0.98408 1.00052 1.21035 1.31370 1.12068 0.89899 0.92388 1.24881 0.94862 0.94930 0.98873 1.69809 1.36746 1.22826 1.23122 0.86519 0.78648 0.79767 0.82982 1.19742 1.21045 1.21076 1.21692 0.98012 0.95806 0.83371 1.46292 1.52781 1.31826 1.05972 1.20348 0.80986 0.85077 0.84670 1.90597 1.38205 1.26369 1.86420 1.22254 1.02130 0.96183 0.90054 1.64670 1.14087 1.43274 1.00262 1.23500 0.86805 1.02555 0.96513 1.22679 0.98287 0.99631 0.94883 1.21424 0.95240 0.95762 0.95484 1.21903 1.00118 0.96173 1.01371 1.21841 1.00701 1.00598 0.96036 1.23083 0.98639 0.95918 0.90918 0.97502 0.89607 0.95416 0.95495 0.89599 0.97548 0.93065 0.92847 0.92727 0.76821 0.88045 0.92199 0.86844 0.94619 0.91320 0.90690 0.92620 0.92454 0.92766 0.92104 0.92733 0.92806 0.93760 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.15 0.30 -2.64 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 4 C -0.51 -13.24 8.01 -34.44 -0.28 -13.51 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.59 9.35 55.43 0.52 -23.07 16 8 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.82 16 13 N -0.72 -12.62 4.96 -60.29 -0.30 -12.92 16 14 C 0.50 8.64 7.54 -10.98 -0.08 8.56 16 15 O -0.54 -10.97 13.52 5.56 0.08 -10.90 16 16 C 0.03 0.33 5.52 -4.97 -0.03 0.31 16 17 N -0.50 -6.65 5.26 -231.89 -1.22 -7.87 16 18 C 0.03 0.45 5.30 -1.90 -0.01 0.44 16 19 C -0.12 -1.25 6.16 -24.87 -0.15 -1.40 16 20 C -0.08 -0.73 0.97 -153.14 -0.15 -0.87 16 21 C -0.14 -1.12 8.21 37.16 0.30 -0.81 16 22 C -0.13 -1.07 8.24 37.16 0.31 -0.76 16 23 C 0.04 0.44 6.02 -2.75 -0.02 0.43 16 24 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 25 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.40 6.27 6.16 -40.82 -0.25 6.02 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.69 7.81 -51.93 -0.41 0.29 16 36 H 0.11 1.87 5.97 -51.93 -0.31 1.56 16 37 H 0.04 0.49 8.02 -51.93 -0.42 0.07 16 38 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 39 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.04 0.43 7.11 -51.93 -0.37 0.06 16 47 H 0.08 0.78 7.69 -51.93 -0.40 0.38 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -28.09 356.13 -8.77 -36.86 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -8.50 Total: 4.04 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 0.31 Total: -7.23 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -1.00 Total: -43.85 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.09 -8.77 -36.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594369020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.538 kcal (2) G-P(sol) polarization free energy of solvation -28.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds