Wall clock time and date at job start Tue Mar 31 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46979 * 2 1 4 4 C 1.52998 * 109.47222 * 60.00081 * 3 2 1 5 5 C 1.53001 * 109.47187 * 299.99739 * 3 2 1 6 6 C 1.53003 * 109.46979 * 179.97438 * 3 2 1 7 7 C 1.50693 * 109.47140 * 180.02562 * 6 3 2 8 8 O 1.21283 * 120.00088 * 359.97438 * 7 6 3 9 9 N 1.34772 * 120.00228 * 180.02562 * 7 6 3 10 10 C 1.47079 * 120.88593 * 180.02562 * 9 7 6 11 11 C 1.53244 * 108.52310 * 231.20537 * 10 9 7 12 12 N 1.46904 * 109.33584 * 306.16644 * 11 10 9 13 13 C 1.46898 * 110.99462 * 187.25026 * 12 11 10 14 14 C 1.50706 * 109.46984 * 170.00213 * 13 12 11 15 15 H 1.07998 * 119.99501 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00436 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00481 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 359.72901 * 16 14 13 19 19 H 1.48502 * 109.46964 * 270.27509 * 18 16 14 20 20 H 1.48505 * 109.47036 * 30.26897 * 18 16 14 21 21 H 1.48490 * 109.47395 * 150.27411 * 18 16 14 22 22 C 1.46905 * 111.26832 * 63.10613 * 12 11 10 23 23 C 1.47087 * 120.88215 * 0.02562 * 9 7 6 24 24 H 1.09002 * 109.47279 * 300.00214 * 1 2 3 25 25 H 1.09001 * 109.47376 * 59.99762 * 1 2 3 26 26 H 1.08998 * 109.47445 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46926 * 240.00149 * 2 1 3 28 28 H 1.09000 * 109.46681 * 119.99964 * 2 1 3 29 29 H 1.09001 * 109.47000 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47239 * 299.99400 * 4 3 2 31 31 H 1.08994 * 109.47149 * 59.99812 * 4 3 2 32 32 H 1.08998 * 109.47523 * 300.00344 * 5 3 2 33 33 H 1.09010 * 109.46888 * 60.00156 * 5 3 2 34 34 H 1.08996 * 109.47176 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.46926 * 60.00149 * 6 3 2 36 36 H 1.08994 * 109.47093 * 300.00004 * 6 3 2 37 37 H 1.08994 * 109.63122 * 111.49507 * 10 9 7 38 38 H 1.09005 * 109.78855 * 351.00463 * 10 9 7 39 39 H 1.09001 * 109.49544 * 186.21029 * 11 10 9 40 40 H 1.08999 * 109.49090 * 66.12553 * 11 10 9 41 41 H 1.09004 * 109.47320 * 50.00617 * 13 12 11 42 42 H 1.09001 * 109.47291 * 289.99914 * 13 12 11 43 43 H 0.96999 * 120.00235 * 179.72806 * 17 16 14 44 44 H 1.09005 * 109.49345 * 56.85017 * 22 12 11 45 45 H 1.08997 * 109.48968 * 176.93020 * 22 12 11 46 46 H 1.08997 * 109.63095 * 248.50952 * 23 9 7 47 47 H 1.09008 * 109.62319 * 9.08298 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1637 -1.2493 6 6 3.5700 1.4425 0.0006 7 6 4.0723 2.8632 0.0013 8 8 3.2842 3.7851 0.0008 9 7 5.3974 3.1096 0.0014 10 6 5.9089 4.4885 0.0026 11 6 6.9317 4.6293 -1.1299 12 7 7.9570 3.5863 -0.9918 13 6 9.0481 3.7901 -1.9540 14 6 10.1878 2.8604 -1.6255 15 1 10.1092 2.1854 -0.7861 16 6 11.3308 2.8716 -2.3964 17 7 12.3256 2.0607 -2.1094 18 14 11.4638 4.0338 -3.8528 19 1 10.9407 3.3635 -5.0703 20 1 10.6695 5.2591 -3.5824 21 1 12.8866 4.4027 -4.0634 22 6 7.3748 2.2449 -1.1324 23 6 6.3703 2.0065 0.0003 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8930 3.1916 1.2490 30 1 0.4400 2.1638 1.2492 31 1 1.8933 1.6499 2.1392 32 1 1.8933 1.6499 -2.1393 33 1 0.4399 2.1637 -1.2493 34 1 1.8930 3.1915 -1.2490 35 1 3.9337 0.9286 -0.8891 36 1 3.9330 0.9288 0.8908 37 1 6.3891 4.7001 0.9579 38 1 5.0875 5.1870 -0.1571 39 1 7.4021 5.6111 -1.0753 40 1 6.4283 4.5195 -2.0904 41 1 9.3937 4.8224 -1.8982 42 1 8.6879 3.5815 -2.9614 43 1 13.1281 2.0658 -2.6541 44 1 6.8652 2.1684 -2.0929 45 1 8.1665 1.4975 -1.0797 46 1 6.8947 1.9798 0.9555 47 1 5.8521 1.0614 -0.1626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602208358.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:02 Heat of formation + Delta-G solvation = -38.482293 kcal Electronic energy + Delta-G solvation = -23358.333084 eV Core-core repulsion = 20154.830251 eV Total energy + Delta-G solvation = -3203.502833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42286 -38.31028 -36.83873 -34.49506 -32.46714 -31.44482 -30.53520 -29.01669 -27.79249 -27.26350 -25.57856 -24.10263 -23.25348 -21.70832 -20.56735 -18.95433 -18.34569 -17.11638 -16.84860 -15.68173 -15.55618 -15.06601 -14.90687 -14.61954 -14.54831 -14.12353 -14.00530 -13.70172 -13.57826 -12.96567 -12.92909 -12.44225 -12.34379 -12.24842 -12.00444 -11.86785 -11.60194 -11.29174 -11.21203 -11.19779 -11.14134 -10.82705 -10.80240 -10.67463 -10.58636 -10.56831 -10.29161 -9.88166 -9.36951 -9.31717 -8.64594 -8.47384 -7.50810 -6.12089 -4.10200 2.72003 3.10930 3.23621 3.31988 3.33585 4.36126 4.48130 4.55596 4.60792 4.71014 4.93585 5.09313 5.18732 5.20260 5.29669 5.31938 5.36258 5.45525 5.47609 5.54099 5.55954 5.58054 5.69838 5.77362 5.79061 5.80229 5.87847 5.91631 5.95387 6.04761 6.06871 6.14394 6.20933 6.33770 6.40348 6.46806 6.49730 6.65650 6.76979 6.88994 7.50262 7.54328 7.79101 7.91898 8.30575 8.56560 8.94786 9.49459 11.00723 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031918 B = 0.003432 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.047274 B = 8156.047105 C = 8436.167156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.046 4.046 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.133 4.133 7 C 0.516 3.484 8 O -0.543 6.543 9 N -0.610 5.610 10 C 0.118 3.882 11 C 0.038 3.962 12 N -0.526 5.526 13 C 0.163 3.837 14 C -0.512 4.512 15 H 0.081 0.919 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.267 1.267 21 H -0.285 1.285 22 C 0.049 3.951 23 C 0.109 3.891 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.026 0.974 41 H 0.030 0.970 42 H -0.016 1.016 43 H 0.264 0.736 44 H 0.025 0.975 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.213 -2.316 4.210 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.046 4.046 4 C -0.211 4.211 5 C -0.211 4.211 6 C -0.172 4.172 7 C 0.305 3.695 8 O -0.422 6.422 9 N -0.343 5.343 10 C -0.004 4.004 11 C -0.091 4.091 12 N -0.251 5.251 13 C 0.037 3.963 14 C -0.550 4.550 15 H 0.099 0.901 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.703 3.297 19 H -0.204 1.204 20 H -0.192 1.192 21 H -0.211 1.211 22 C -0.080 4.080 23 C -0.014 4.014 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.002 0.998 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.121 0.879 46 H 0.096 0.904 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.228 -1.844 4.620 20.831 hybrid contribution 0.136 0.357 -1.708 1.750 sum -20.092 -1.487 2.912 20.357 Atomic orbital electron populations 1.21869 0.95880 1.01207 1.02183 1.21594 0.96127 0.95733 1.01778 1.20273 0.92246 0.95033 0.97047 1.22141 1.00617 1.02719 0.95596 1.22146 1.00612 1.02728 0.95648 1.21800 0.96955 0.94384 1.04109 1.20623 0.81565 0.91671 0.75658 1.90531 1.54168 1.46799 1.50701 1.48302 1.05482 1.08009 1.72494 1.21692 0.96620 0.82768 0.99357 1.22457 0.93165 0.97203 0.96266 1.61912 1.08997 1.00610 1.53564 1.20187 0.89635 0.97961 0.88561 1.21003 0.98149 1.20747 1.15115 0.90052 1.24890 0.95580 0.95417 0.97344 1.69884 1.06217 1.37871 1.39758 0.86865 0.77485 0.82029 0.83365 1.20356 1.19211 1.21095 1.22383 0.96904 0.93698 0.95036 1.22018 0.90015 0.88666 1.00699 0.92433 0.92423 0.93134 0.92062 0.92074 0.89793 0.92959 0.93713 0.93704 0.92939 0.89815 0.89043 0.89055 0.90974 0.89350 0.90116 0.95537 0.95183 0.99846 0.92582 0.95698 0.87896 0.90430 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.21 37.16 0.34 -0.86 16 2 C -0.11 -0.97 4.99 -26.73 -0.13 -1.10 16 3 C -0.05 -0.46 0.54 -154.51 -0.08 -0.55 16 4 C -0.15 -1.64 7.82 37.16 0.29 -1.35 16 5 C -0.15 -1.71 7.82 37.16 0.29 -1.42 16 6 C -0.13 -1.40 3.13 -27.89 -0.09 -1.48 16 7 C 0.52 7.04 7.12 -10.99 -0.08 6.96 16 8 O -0.54 -8.55 10.80 5.56 0.06 -8.49 16 9 N -0.61 -8.66 3.01 -172.44 -0.52 -9.18 16 10 C 0.12 1.75 6.59 -3.60 -0.02 1.72 16 11 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 12 N -0.53 -10.42 4.62 -235.73 -1.09 -11.51 16 13 C 0.16 3.80 3.79 -4.97 -0.02 3.78 16 14 C -0.51 -13.95 8.96 -34.44 -0.31 -14.26 16 15 H 0.08 2.39 7.37 -52.49 -0.39 2.00 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 18 Si 0.88 21.04 27.46 -169.99 -4.67 16.37 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.20 6.55 56.52 0.37 -5.83 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.05 0.85 5.46 -3.69 -0.02 0.83 16 23 C 0.11 1.49 6.50 -3.59 -0.02 1.46 16 24 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 25 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.10 5.51 -51.93 -0.29 0.81 16 30 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.53 6.43 -51.92 -0.33 0.19 16 34 H 0.08 1.13 5.51 -51.93 -0.29 0.85 16 35 H 0.09 0.89 7.66 -51.93 -0.40 0.50 16 36 H 0.09 0.84 8.00 -51.93 -0.42 0.42 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.28 7.07 -51.93 -0.37 0.92 16 39 H 0.08 1.29 7.99 -51.93 -0.41 0.88 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.03 0.72 7.04 -51.93 -0.37 0.35 16 42 H -0.02 -0.38 7.55 -51.93 -0.39 -0.77 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.10 1.98 6.67 -51.93 -0.35 1.64 16 46 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.08 0.88 6.02 -51.92 -0.31 0.57 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -30.06 347.34 -8.46 -38.52 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.28 Total: -1.18 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 0.03 Total: -3.77 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.83 Total: -46.69 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.06 Total: -8.49 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.06 -8.46 -38.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208358.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.035 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds