Wall clock time and date at job start Tue Mar 31 2020 05:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.50789 * 2 1 4 4 C 1.53046 * 109.49248 * 239.93894 * 2 1 3 5 5 N 1.46950 * 109.36606 * 181.63234 * 4 2 1 6 6 C 1.46896 * 111.00284 * 183.19007 * 5 4 2 7 7 C 1.53003 * 109.47515 * 170.66163 * 6 5 4 8 8 C 1.50690 * 115.54968 * 305.81138 * 7 6 5 9 9 H 1.07999 * 120.00118 * 145.38857 * 8 7 6 10 10 C 1.37885 * 120.00309 * 325.38206 * 8 7 6 11 11 N 1.31512 * 119.99854 * 165.37136 * 10 8 7 12 12 Si 1.86803 * 119.99678 * 345.37840 * 10 8 7 13 13 H 1.48491 * 109.47208 * 96.18931 * 12 10 8 14 14 H 1.48501 * 109.46783 * 216.19019 * 12 10 8 15 15 H 1.48505 * 109.46740 * 336.18667 * 12 10 8 16 16 C 1.53000 * 117.49911 * 160.13825 * 7 6 5 17 17 C 1.53003 * 117.49529 * 91.48035 * 7 6 5 18 18 C 1.46955 * 110.88203 * 59.32318 * 5 4 2 19 19 C 1.53056 * 109.36468 * 300.68065 * 18 5 4 20 20 N 1.46957 * 109.36298 * 58.39680 * 19 18 5 21 21 C 1.46897 * 110.99790 * 176.81163 * 20 19 18 22 22 C 1.53004 * 109.47497 * 293.60732 * 21 20 19 23 23 O 1.42899 * 109.46941 * 70.71152 * 22 21 20 24 24 H 1.08998 * 109.47269 * 299.95400 * 1 2 3 25 25 H 1.08999 * 109.46881 * 59.94889 * 1 2 3 26 26 H 1.09000 * 109.47379 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46913 * 184.44449 * 3 2 1 28 28 H 1.09001 * 109.46731 * 304.44160 * 3 2 1 29 29 H 1.09001 * 109.47440 * 64.43887 * 3 2 1 30 30 H 1.09006 * 109.48683 * 61.66697 * 4 2 1 31 31 H 1.09002 * 109.51035 * 301.61399 * 4 2 1 32 32 H 1.09001 * 109.47375 * 290.66584 * 6 5 4 33 33 H 1.09004 * 109.47379 * 50.66052 * 6 5 4 34 34 H 0.97004 * 119.99705 * 180.02562 * 11 10 8 35 35 H 1.09000 * 117.50128 * 0.02562 * 16 7 6 36 36 H 1.08999 * 117.49868 * 145.01784 * 16 7 6 37 37 H 1.08995 * 117.49493 * 214.98009 * 17 7 6 38 38 H 1.09000 * 117.50287 * 359.97438 * 17 7 6 39 39 H 1.08995 * 109.49423 * 180.71058 * 18 5 4 40 40 H 1.09005 * 109.50801 * 60.65826 * 18 5 4 41 41 H 1.08995 * 109.48271 * 298.43296 * 19 18 5 42 42 H 1.09002 * 109.50920 * 178.37789 * 19 18 5 43 43 H 1.08995 * 109.47015 * 173.60595 * 21 20 19 44 44 H 1.09000 * 109.47264 * 53.61062 * 21 20 19 45 45 H 1.08991 * 109.47179 * 190.71335 * 22 21 20 46 46 H 1.09003 * 109.46743 * 310.71243 * 22 21 20 47 47 H 0.96693 * 114.00028 * 184.94446 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0407 -0.7227 -1.2487 5 7 3.5096 -0.7554 -1.2263 6 6 4.0412 -1.3753 -2.4473 7 6 5.5584 -1.1841 -2.4976 8 6 6.0388 0.2383 -2.3691 9 1 6.9643 0.4514 -1.8547 10 6 5.2970 1.2680 -2.9083 11 7 5.5476 2.5113 -2.5604 12 14 3.9361 0.8968 -4.1329 13 1 2.6336 0.8370 -3.4224 14 1 3.8903 1.9671 -5.1614 15 1 4.2028 -0.4087 -4.7886 16 6 6.3588 -2.1210 -3.4045 17 6 6.4295 -2.2822 -1.8839 18 6 3.9999 -1.4491 -0.0271 19 6 3.4892 -0.7264 1.2217 20 7 2.0202 -0.6937 1.1992 21 6 1.4887 -0.0738 2.4203 22 6 1.8072 -0.9630 3.6240 23 8 3.2093 -0.9132 3.8953 24 1 -0.3634 0.5131 0.8904 25 1 -0.3633 0.5146 -0.8895 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1281 1.4425 -0.0796 28 1 1.6144 1.9787 -0.8475 29 1 1.7443 1.9328 0.9271 30 1 1.7023 -0.1931 -2.1393 31 1 1.6545 -1.7419 -1.2630 32 1 3.8091 -2.4403 -2.4448 33 1 3.5868 -0.9066 -3.3203 34 1 5.0254 3.2356 -2.9395 35 1 5.8045 -2.8732 -3.9657 36 1 7.2331 -1.7085 -3.9081 37 1 7.3502 -1.9756 -1.3877 38 1 5.9217 -3.1406 -1.4441 39 1 5.0899 -1.4491 -0.0270 40 1 3.6363 -2.4767 -0.0269 41 1 3.8755 0.2927 1.2354 42 1 3.8277 -1.2557 2.1125 43 1 0.4087 0.0410 2.3290 44 1 1.9475 0.9050 2.5602 45 1 1.2559 -0.6074 4.4944 46 1 1.5159 -1.9901 3.4041 47 1 3.4953 -1.5120 4.5986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602817025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:12 Heat of formation + Delta-G solvation = 15.383204 kcal Electronic energy + Delta-G solvation = -25018.409939 eV Core-core repulsion = 21817.242890 eV Total energy + Delta-G solvation = -3201.167049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.82644 -37.51489 -36.58656 -34.28555 -32.53633 -31.98678 -29.95330 -27.04090 -26.88390 -26.67612 -25.17478 -23.48881 -21.80637 -21.27841 -20.85736 -18.86350 -17.91631 -17.52977 -16.27144 -16.02761 -15.53572 -14.99720 -14.75865 -14.30824 -14.23073 -13.92819 -13.45445 -13.21913 -12.98818 -12.81221 -12.67561 -12.52677 -11.93267 -11.76248 -11.57262 -11.43750 -11.32269 -11.16105 -10.86936 -10.62244 -10.55936 -10.54050 -10.42925 -10.30431 -9.94347 -9.77046 -9.45418 -9.25598 -9.05208 -8.50851 -8.13929 -7.91898 -7.34559 -5.96872 -3.85604 3.37626 3.46412 3.48937 4.11618 4.31782 4.52302 4.57185 5.00318 5.06105 5.13551 5.28933 5.33494 5.43343 5.48560 5.57176 5.67312 5.74901 5.83085 5.85910 5.91706 5.92473 6.01015 6.06651 6.13162 6.15773 6.19096 6.27287 6.33836 6.39532 6.44399 6.46428 6.57246 6.63439 6.67434 6.81182 6.85615 7.07144 7.07442 7.23078 7.43012 7.48874 7.62464 7.83634 7.95047 8.02904 8.66417 9.06948 9.73029 11.15860 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.007020 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.115545 B = 3987.779099 C = 4544.907284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.110 3.890 3 C -0.171 4.171 4 C 0.063 3.937 5 N -0.502 5.502 6 C 0.082 3.918 7 C 0.024 3.976 8 C -0.468 4.468 9 H 0.071 0.929 10 C 0.100 3.900 11 N -0.890 5.890 12 Si 0.886 3.114 13 H -0.271 1.271 14 H -0.309 1.309 15 H -0.272 1.272 16 C -0.214 4.214 17 C -0.194 4.194 18 C 0.066 3.934 19 C 0.050 3.950 20 N -0.527 5.527 21 C 0.046 3.954 22 C 0.081 3.919 23 O -0.564 6.564 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.014 0.986 33 H 0.064 0.936 34 H 0.260 0.740 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.020 0.980 41 H 0.047 0.953 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.044 0.956 46 H 0.052 0.948 47 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 -7.378 9.609 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.020 3.980 3 C -0.229 4.229 4 C -0.066 4.066 5 N -0.225 5.225 6 C -0.045 4.045 7 C 0.022 3.978 8 C -0.504 4.504 9 H 0.089 0.911 10 C -0.103 4.103 11 N -0.527 5.527 12 Si 0.720 3.280 13 H -0.199 1.199 14 H -0.238 1.238 15 H -0.198 1.198 16 C -0.252 4.252 17 C -0.232 4.232 18 C -0.062 4.062 19 C -0.077 4.077 20 N -0.252 5.252 21 C -0.082 4.082 22 C 0.003 3.997 23 O -0.369 6.369 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.032 0.968 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.038 0.962 41 H 0.065 0.935 42 H 0.117 0.883 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -10.459 -6.722 9.120 15.419 hybrid contribution -0.805 -0.575 -0.341 1.047 sum -11.264 -7.297 8.778 16.037 Atomic orbital electron populations 1.21912 0.94559 1.01826 1.01460 1.21029 0.93795 0.92923 0.90252 1.22346 1.04900 0.95490 1.00181 1.22225 0.89402 0.98029 0.96922 1.61905 1.05361 1.53575 1.01687 1.21971 0.96230 0.94354 0.91939 1.19283 0.87889 0.92621 0.97964 1.20076 1.08172 0.86336 1.35824 0.91086 1.24715 0.95677 0.94535 0.95423 1.69962 1.41292 0.99303 1.42109 0.87039 0.83677 0.76190 0.81133 1.19852 1.23777 1.19825 1.23157 1.04832 1.05129 0.92102 1.22824 1.03169 1.01698 0.95496 1.22164 1.01120 0.93851 0.89102 1.22510 0.85748 1.00991 0.98466 1.62509 1.10052 1.51953 1.00658 1.22235 1.00064 0.96387 0.89492 1.22209 0.81824 0.99637 0.96067 1.86616 1.23904 1.67265 1.59163 0.92577 0.92341 0.92259 0.89232 0.92940 0.93996 0.90780 0.95435 0.96766 0.91815 0.92984 0.91848 0.89751 0.90089 0.91439 0.89057 0.96197 0.93493 0.88306 0.89584 0.93787 0.93834 0.92945 0.78118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.18 37.16 0.30 -1.54 16 2 C 0.11 1.80 0.68 -131.54 -0.09 1.71 16 3 C -0.17 -3.11 7.69 37.16 0.29 -2.83 16 4 C 0.06 1.18 4.29 -3.77 -0.02 1.16 16 5 N -0.50 -10.58 3.16 -234.47 -0.74 -11.32 16 6 C 0.08 1.82 3.67 -3.82 -0.01 1.80 16 7 C 0.02 0.56 0.85 -155.66 -0.13 0.43 16 8 C -0.47 -13.07 9.25 -34.44 -0.32 -13.39 16 9 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 10 C 0.10 2.84 5.30 -17.82 -0.09 2.75 16 11 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 12 Si 0.89 22.30 23.89 -169.99 -4.06 18.23 16 13 H -0.27 -6.49 5.17 56.52 0.29 -6.20 16 14 H -0.31 -7.95 7.11 56.52 0.40 -7.55 16 15 H -0.27 -6.67 6.50 56.52 0.37 -6.30 16 16 C -0.21 -4.63 9.96 -26.69 -0.27 -4.89 16 17 C -0.19 -4.05 8.24 -26.69 -0.22 -4.27 16 18 C 0.07 1.27 5.27 -3.77 -0.02 1.25 16 19 C 0.05 0.88 4.75 -3.76 -0.02 0.86 16 20 N -0.53 -8.20 4.47 -218.82 -0.98 -9.18 16 21 C 0.05 0.60 4.64 -3.82 -0.02 0.59 16 22 C 0.08 0.86 7.19 37.16 0.27 1.13 16 23 O -0.56 -6.58 10.61 -35.23 -0.37 -6.96 16 24 H 0.06 0.65 6.14 -51.93 -0.32 0.33 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.99 6.06 -51.93 -0.31 1.68 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.68 6.50 -51.93 -0.34 0.34 16 30 H 0.07 1.46 6.17 -51.93 -0.32 1.14 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.01 0.30 8.07 -51.93 -0.42 -0.12 16 33 H 0.06 1.49 2.64 -51.93 -0.14 1.35 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 37 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.09 1.90 5.97 -51.93 -0.31 1.59 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.05 0.96 6.44 -51.93 -0.33 0.62 16 42 H 0.10 1.63 5.22 -51.93 -0.27 1.36 16 43 H 0.09 0.97 5.72 -51.93 -0.30 0.68 16 44 H 0.04 0.65 6.82 -51.93 -0.35 0.29 16 45 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.37 2.61 9.12 45.56 0.42 3.03 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -30.67 335.64 -8.02 -38.70 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.35 Total: 6.84 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -0.35 Total: -15.24 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.95 Total: -46.64 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.37 Total: -6.96 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.06 Total: 18.23 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.67 -8.02 -38.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602817025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.082 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds