Wall clock time and date at job start Tue Mar 31 2020 05:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46605 * 2 1 4 4 C 1.50697 * 109.47300 * 239.99572 * 2 1 3 5 5 H 1.08002 * 119.99674 * 269.54700 * 4 2 1 6 6 C 1.37872 * 119.99890 * 89.54718 * 4 2 1 7 7 N 1.31515 * 120.00485 * 352.46767 * 6 4 2 8 8 Si 1.86805 * 119.99895 * 172.47067 * 6 4 2 9 9 H 1.48497 * 109.46806 * 269.99864 * 8 6 4 10 10 H 1.48500 * 109.47137 * 29.99850 * 8 6 4 11 11 H 1.48495 * 109.47198 * 149.99775 * 8 6 4 12 12 N 1.46896 * 109.46673 * 119.99466 * 2 1 3 13 13 C 1.46903 * 111.00347 * 274.99812 * 12 2 1 14 14 H 1.09000 * 109.46837 * 35.00427 * 13 12 2 15 15 C 1.52997 * 109.47488 * 275.00685 * 13 12 2 16 16 C 1.50702 * 109.47266 * 155.00130 * 13 12 2 17 17 O 1.21277 * 120.00180 * 0.02562 * 16 13 12 18 18 N 1.34779 * 120.00041 * 180.02562 * 16 13 12 19 19 C 1.46491 * 120.00268 * 180.02562 * 18 16 13 20 20 C 1.53005 * 109.47045 * 275.00071 * 19 18 16 21 21 C 1.53004 * 109.47188 * 179.97438 * 20 19 18 22 22 C 1.53001 * 109.46863 * 59.99806 * 21 20 19 23 23 C 1.53004 * 109.46863 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.47154 * 299.99642 * 22 21 20 25 25 C 1.52996 * 109.46919 * 60.00658 * 24 22 21 26 26 H 1.08999 * 109.47483 * 301.80887 * 1 2 3 27 27 H 1.09000 * 109.46949 * 61.80929 * 1 2 3 28 28 H 1.09001 * 109.46791 * 181.80636 * 1 2 3 29 29 H 0.97005 * 119.99314 * 354.57808 * 7 6 4 30 30 H 1.00905 * 110.99891 * 151.05118 * 12 2 1 31 31 H 1.09000 * 109.46870 * 299.99722 * 15 13 12 32 32 H 1.08999 * 109.46991 * 59.99307 * 15 13 12 33 33 H 1.09002 * 109.47239 * 179.97438 * 15 13 12 34 34 H 0.97006 * 119.99815 * 359.97438 * 18 16 13 35 35 H 1.09003 * 109.47095 * 34.99277 * 19 18 16 36 36 H 1.09003 * 109.47035 * 299.99692 * 20 19 18 37 37 H 1.09001 * 109.47440 * 59.99536 * 20 19 18 38 38 H 1.09003 * 109.46956 * 299.99832 * 21 20 19 39 39 H 1.09000 * 109.46974 * 180.02562 * 21 20 19 40 40 H 1.08993 * 109.47422 * 60.00358 * 22 21 20 41 41 H 1.08994 * 109.47499 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.46974 * 300.00216 * 23 22 21 43 43 H 1.09003 * 109.47097 * 59.99489 * 23 22 21 44 44 H 1.09003 * 109.47502 * 300.00487 * 24 22 21 45 45 H 1.09001 * 109.47217 * 180.02562 * 24 22 21 46 46 H 1.09003 * 109.47320 * 179.97438 * 25 24 22 47 47 H 1.09000 * 109.47657 * 59.99483 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.2194 -1.7738 -1.2014 6 6 2.2533 -0.0031 -2.3930 7 7 1.8878 1.2576 -2.4753 8 14 3.0719 -0.8353 -3.8514 9 1 4.5436 -0.6606 -3.7590 10 1 2.7437 -2.2835 -3.8432 11 1 2.5789 -0.2232 -5.1114 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2228 2.3469 14 1 1.2576 0.9331 2.2907 15 6 3.4110 0.9811 2.3224 16 6 1.9785 -0.5674 3.6260 17 8 1.8639 -1.7740 3.5857 18 7 2.0129 0.0670 4.8147 19 6 1.9124 -0.7011 6.0580 20 6 0.4386 -0.9386 6.3931 21 6 0.3336 -1.7413 7.6914 22 6 0.9959 -0.9608 8.8285 23 6 0.8915 -1.7638 10.1267 24 6 2.4697 -0.7234 8.4935 25 6 2.5746 0.0794 7.1953 26 1 -0.3634 0.5417 0.8733 27 1 -0.3633 0.4855 -0.9058 28 1 -0.3633 -1.0272 0.0324 29 1 1.3929 1.6674 -1.7486 30 1 2.9173 -1.1204 1.0289 31 1 4.2359 0.2708 2.3787 32 1 3.4861 1.5526 1.3973 33 1 3.4574 1.6605 3.1736 34 1 2.1049 1.0321 4.8469 35 1 2.4159 -1.6599 5.9345 36 1 -0.0650 0.0202 6.5166 37 1 -0.0332 -1.4950 5.5832 38 1 0.8371 -2.7001 7.5674 39 1 -0.7164 -1.9109 7.9298 40 1 0.4924 -0.0020 8.9525 41 1 1.3628 -1.2076 10.9369 42 1 -0.1584 -1.9334 10.3656 43 1 1.3951 -2.7225 10.0024 44 1 2.9732 -1.6822 8.3695 45 1 2.9416 -0.1677 9.3038 46 1 3.6247 0.2489 6.9567 47 1 2.0712 1.0382 7.3191 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602863327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:54 Heat of formation + Delta-G solvation = -74.981269 kcal Electronic energy + Delta-G solvation = -22916.592391 eV Core-core repulsion = 19711.506844 eV Total energy + Delta-G solvation = -3205.085547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.99023 -38.44480 -36.17031 -34.51779 -33.19645 -31.32917 -31.00212 -30.04149 -27.15486 -26.16616 -24.85021 -23.49403 -22.94731 -21.33285 -20.33871 -20.13272 -19.46438 -17.47472 -16.47921 -16.07636 -15.27654 -14.83881 -14.53843 -14.50628 -14.25139 -14.06579 -13.71305 -13.39979 -13.26444 -12.93715 -12.75261 -12.44760 -12.42408 -12.18317 -12.01592 -11.81785 -11.34910 -11.29709 -11.19846 -11.10590 -10.96600 -10.92156 -10.76154 -10.64475 -10.55461 -10.31557 -10.12890 -10.10585 -9.25855 -8.85516 -8.54786 -8.36119 -7.32198 -6.39981 -4.11776 3.08143 3.31464 3.43356 3.47359 3.63437 4.43074 4.43818 4.50796 4.61080 4.82582 4.95929 5.05771 5.14743 5.16251 5.26987 5.28668 5.30727 5.37877 5.40271 5.45846 5.51758 5.55386 5.57782 5.67997 5.78886 5.89601 5.90988 5.92724 5.99905 6.02810 6.10398 6.19572 6.26760 6.36302 6.55122 6.68029 6.80618 6.91849 7.00536 7.54475 7.70433 7.90090 8.10301 8.54912 8.59298 8.66778 8.85606 9.61996 10.97910 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041492 B = 0.003013 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.668023 B = 9289.895627 C = 9422.057564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.195 3.805 3 H 0.009 0.991 4 C -0.597 4.597 5 H 0.057 0.943 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 1.070 2.930 9 H -0.288 1.288 10 H -0.287 1.287 11 H -0.286 1.286 12 N -0.662 5.662 13 C 0.068 3.932 14 H 0.093 0.907 15 C -0.173 4.173 16 C 0.519 3.481 17 O -0.518 6.518 18 N -0.738 5.738 19 C 0.147 3.853 20 C -0.130 4.130 21 C -0.111 4.111 22 C -0.094 4.094 23 C -0.148 4.148 24 C -0.110 4.110 25 C -0.126 4.126 26 H 0.012 0.988 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.270 0.730 30 H 0.343 0.657 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.395 0.605 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 0.474 23.063 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 H 0.027 0.973 4 C -0.635 4.635 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.898 3.102 9 H -0.215 1.215 10 H -0.213 1.213 11 H -0.212 1.212 12 N -0.294 5.294 13 C -0.047 4.047 14 H 0.111 0.889 15 C -0.233 4.233 16 C 0.305 3.695 17 O -0.391 6.391 18 N -0.392 5.392 19 C 0.043 3.957 20 C -0.169 4.169 21 C -0.149 4.149 22 C -0.113 4.113 23 C -0.205 4.205 24 C -0.148 4.148 25 C -0.164 4.164 26 H 0.031 0.969 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.162 0.838 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.229 0.771 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.449 -0.422 21.619 21.627 hybrid contribution 0.114 0.835 1.363 1.603 sum 0.564 0.413 22.982 22.992 Atomic orbital electron populations 1.21831 0.98769 0.99932 0.97698 1.19333 0.91639 0.93053 0.87206 0.97317 1.22043 1.48362 0.96792 0.96347 0.92455 1.25838 0.96085 0.95645 1.00681 1.70773 1.36066 1.12491 1.35383 0.83534 0.76203 0.74953 0.75479 1.21462 1.21333 1.21160 1.60429 1.33433 1.31245 1.04276 1.21466 0.98037 0.94025 0.91174 0.88918 1.22435 0.97661 1.00637 1.02548 1.21039 0.75080 0.88698 0.84701 1.90652 1.46950 1.14489 1.87054 1.46191 1.76939 1.10536 1.05513 1.20867 0.95791 0.96039 0.83045 1.21930 0.96683 1.00530 0.97720 1.21556 1.00602 0.98883 0.93884 1.21180 0.95978 0.99235 0.94868 1.21831 1.01637 1.00169 0.96860 1.21535 0.96305 1.00435 0.96511 1.21800 1.00967 0.99096 0.94515 0.96920 0.93622 0.93620 0.91917 0.83817 0.92280 0.91117 0.92812 0.77145 0.89752 0.92032 0.91205 0.91736 0.91866 0.91241 0.92826 0.92744 0.92643 0.91662 0.91689 0.91369 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 9.28 37.16 0.34 -2.62 16 2 C 0.20 4.88 2.05 -68.87 -0.14 4.74 16 3 H 0.01 0.24 5.93 -51.93 -0.31 -0.07 16 4 C -0.60 -16.66 8.28 -34.44 -0.29 -16.94 16 5 H 0.06 1.65 7.83 -52.49 -0.41 1.23 16 6 C 0.02 0.62 5.44 -17.82 -0.10 0.53 16 7 N -0.91 -26.91 13.55 55.43 0.75 -26.16 16 8 Si 1.07 25.13 29.91 -169.99 -5.08 20.04 16 9 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 N -0.66 -14.84 5.54 -102.17 -0.57 -15.40 16 13 C 0.07 1.21 2.81 -68.86 -0.19 1.02 16 14 H 0.09 1.64 7.13 -51.93 -0.37 1.27 16 15 C -0.17 -2.67 9.04 37.16 0.34 -2.34 16 16 C 0.52 8.90 7.19 -10.98 -0.08 8.82 16 17 O -0.52 -11.01 16.09 5.56 0.09 -10.92 16 18 N -0.74 -9.26 4.97 -53.81 -0.27 -9.53 16 19 C 0.15 1.67 2.45 -67.93 -0.17 1.50 16 20 C -0.13 -1.44 5.49 -26.73 -0.15 -1.59 16 21 C -0.11 -1.01 5.20 -26.73 -0.14 -1.15 16 22 C -0.09 -0.71 2.72 -90.62 -0.25 -0.95 16 23 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 24 C -0.11 -0.82 5.20 -26.73 -0.14 -0.96 16 25 C -0.13 -1.04 5.39 -26.73 -0.14 -1.19 16 26 H 0.01 0.26 7.45 -51.93 -0.39 -0.13 16 27 H 0.04 1.13 7.76 -51.93 -0.40 0.73 16 28 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.27 7.90 6.45 -40.82 -0.26 7.63 16 30 H 0.34 7.88 8.09 -39.29 -0.32 7.56 16 31 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 32 H 0.07 1.22 7.43 -51.93 -0.39 0.84 16 33 H 0.05 0.64 7.57 -51.93 -0.39 0.25 16 34 H 0.39 3.93 8.02 -40.82 -0.33 3.61 16 35 H 0.08 1.15 7.58 -51.93 -0.39 0.76 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -31.67 366.33 -8.99 -40.66 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -8.67 Total: 7.55 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -0.76 Total: -11.76 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.08 Total: -51.08 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.67 -8.99 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.324 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds