Wall clock time and date at job start Tue Mar 31 2020 05:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48503 * 109.47066 * 239.99830 * 3 2 1 5 5 H 1.48496 * 109.47389 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47167 * 120.00345 * 3 2 1 7 7 C 1.37875 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99817 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00401 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47567 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47188 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.47072 * 180.02562 * 11 10 9 13 13 C 1.46961 * 110.99734 * 293.80266 * 12 11 10 14 14 C 1.53049 * 109.36292 * 176.81247 * 13 12 11 15 15 N 1.46955 * 109.36716 * 58.39846 * 14 13 12 16 16 C 1.46896 * 111.00246 * 176.81294 * 15 14 13 17 17 H 1.09001 * 110.01697 * 73.86117 * 16 15 14 18 18 C 1.53879 * 110.03340 * 195.25199 * 16 15 14 19 19 C 1.54270 * 106.59436 * 119.28137 * 18 16 15 20 20 C 1.54882 * 104.19730 * 23.61579 * 19 18 16 21 21 C 1.54266 * 110.03046 * 312.41930 * 16 15 14 22 22 H 1.08996 * 110.48673 * 335.78340 * 21 16 15 23 23 O 1.42898 * 110.48685 * 98.42814 * 21 16 15 24 24 C 1.46961 * 110.88206 * 300.68030 * 15 14 13 25 25 C 1.46952 * 110.99889 * 170.00107 * 12 11 10 26 26 H 0.96999 * 120.00082 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47153 * 59.99528 * 9 7 2 28 28 H 1.09012 * 109.46933 * 300.00494 * 9 7 2 29 29 H 1.09002 * 109.46844 * 60.00193 * 10 9 7 30 30 H 1.08996 * 109.46961 * 300.00044 * 10 9 7 31 31 H 1.08993 * 109.47007 * 60.00172 * 11 10 9 32 32 H 1.08996 * 109.47340 * 299.99977 * 11 10 9 33 33 H 1.09003 * 109.48904 * 296.77641 * 13 12 11 34 34 H 1.09002 * 109.49205 * 56.84173 * 13 12 11 35 35 H 1.09008 * 109.48964 * 298.43140 * 14 13 12 36 36 H 1.09002 * 109.49130 * 178.36713 * 14 13 12 37 37 H 1.08995 * 110.03235 * 238.56475 * 18 16 15 38 38 H 1.08999 * 110.03141 * 0.02562 * 18 16 15 39 39 H 1.09005 * 110.47792 * 142.29095 * 19 18 16 40 40 H 1.08993 * 110.48721 * 264.79456 * 19 18 16 41 41 H 1.08996 * 110.76122 * 80.36807 * 20 19 18 42 42 H 1.09005 * 110.75646 * 203.73872 * 20 19 18 43 43 H 0.96701 * 114.00692 * 179.97438 * 23 21 16 44 44 H 1.09003 * 109.48904 * 299.35325 * 24 15 14 45 45 H 1.08989 * 109.49349 * 179.28524 * 24 15 14 46 46 H 1.08999 * 109.49234 * 303.15264 * 25 12 11 47 47 H 1.09000 * 109.49101 * 63.20355 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4349 -6.1037 0.0007 13 6 3.1981 -6.1447 -1.2545 14 6 4.2335 -7.2694 -1.1823 15 7 3.5489 -8.5476 -0.9435 16 6 4.5034 -9.6641 -0.9428 17 1 5.0888 -9.6541 -0.0234 18 6 3.7518 -11.0004 -1.0746 19 6 4.2553 -11.6630 -2.3735 20 6 5.6502 -11.0313 -2.6062 21 6 5.4375 -9.5615 -2.1663 22 1 4.9612 -8.9900 -2.9629 23 8 6.6822 -8.9649 -1.7965 24 6 2.7857 -8.5066 0.3118 25 6 1.7502 -7.3818 0.2396 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8902 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6043 0.8895 30 1 2.8719 -3.6043 -0.8905 31 1 0.8534 -5.0451 -0.8896 32 1 0.8539 -5.0446 0.8903 33 1 2.5190 -6.3286 -2.0871 34 1 3.7059 -5.1917 -1.4028 35 1 4.9291 -7.0715 -0.3667 36 1 4.7812 -7.3206 -2.1233 37 1 3.9731 -11.6391 -0.2195 38 1 2.6787 -10.8203 -1.1394 39 1 4.3420 -12.7417 -2.2426 40 1 3.5869 -11.4329 -3.2031 41 1 6.4024 -11.5158 -1.9837 42 1 5.9270 -11.0832 -3.6592 43 1 7.3085 -8.8761 -2.5279 44 1 3.4648 -8.3227 1.1444 45 1 2.2778 -9.4594 0.4600 46 1 1.2026 -7.3307 1.1806 47 1 1.0544 -7.5796 -0.5759 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609572712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:33 Heat of formation + Delta-G solvation = -56.242003 kcal Electronic energy + Delta-G solvation = -22840.355384 eV Core-core repulsion = 19636.082433 eV Total energy + Delta-G solvation = -3204.272951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.05653 -38.20573 -35.80183 -34.82421 -33.32210 -31.36089 -30.86073 -28.64418 -27.87303 -26.35097 -24.52614 -23.60619 -22.19133 -20.92982 -20.20834 -19.78526 -19.59844 -17.96009 -16.70571 -16.16478 -15.33188 -15.17077 -14.92837 -14.75312 -14.47527 -14.36287 -14.10996 -13.87706 -13.77814 -13.14565 -12.68170 -12.58148 -12.25827 -12.05658 -11.71110 -11.62853 -11.44103 -11.35828 -11.16033 -11.12381 -10.94895 -10.75487 -10.66048 -10.60438 -10.40908 -10.32807 -10.18417 -9.54252 -9.27451 -9.01813 -8.41847 -8.29928 -7.98444 -5.95499 -3.97399 3.36567 3.40412 3.43412 3.61443 3.95379 4.18768 4.19945 4.46010 4.50705 4.69327 4.95086 4.98201 5.10275 5.15386 5.19463 5.27485 5.35454 5.38388 5.40198 5.45462 5.52812 5.56230 5.64171 5.68592 5.73887 5.80287 5.83779 5.87283 5.96090 6.00101 6.04599 6.13395 6.22137 6.38060 6.76175 6.80974 6.96887 7.01039 7.18308 7.37630 7.43085 7.47482 7.73256 7.88948 8.05345 8.48918 9.09694 9.66279 11.16001 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033068 B = 0.002856 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.528074 B = 9802.839472 C =10391.810090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.104 4.104 11 C 0.057 3.943 12 N -0.541 5.541 13 C 0.055 3.945 14 C 0.061 3.939 15 N -0.534 5.534 16 C 0.087 3.913 17 H 0.054 0.946 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.156 4.156 21 C 0.099 3.901 22 H 0.074 0.926 23 O -0.564 6.564 24 C 0.059 3.941 25 C 0.057 3.943 26 H 0.260 0.740 27 H 0.013 0.987 28 H 0.015 0.985 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.378 0.622 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.150 -24.882 -4.818 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.070 4.070 12 N -0.265 5.265 13 C -0.073 4.073 14 C -0.067 4.067 15 N -0.259 5.259 16 C -0.022 4.022 17 H 0.072 0.928 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.194 4.194 21 C 0.040 3.960 22 H 0.092 0.908 23 O -0.369 6.369 24 C -0.069 4.069 25 C -0.072 4.072 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.225 0.775 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.693 -24.740 -4.217 26.560 hybrid contribution 0.643 0.940 -0.553 1.266 sum 9.336 -23.800 -4.770 26.007 Atomic orbital electron populations 1.69957 1.06055 1.26625 1.51046 1.25026 0.94843 0.99220 0.95423 0.86661 0.79575 0.83164 0.78619 1.20277 1.21329 1.20232 1.21226 0.93014 0.91085 1.50327 0.92750 1.19065 0.94030 0.91388 0.97043 1.21644 0.99127 0.92747 1.00691 1.22272 0.93630 0.90903 1.00178 1.62233 1.27055 1.02987 1.34266 1.22205 0.95922 0.98518 0.90672 1.22178 0.95436 0.87875 1.01228 1.62380 1.25639 1.03218 1.34708 1.22168 0.91423 0.91396 0.97200 0.92786 1.22161 1.01090 0.94307 0.97760 1.22213 0.95930 0.99544 0.97959 1.23157 0.98293 0.96522 1.01437 1.22764 0.84492 0.92206 0.96508 0.90839 1.86544 1.26884 1.83709 1.39806 1.22160 0.96098 0.98424 0.90229 1.22117 0.95071 0.89062 1.00920 0.93011 0.96845 0.96658 0.92691 0.93513 0.95314 0.91292 0.94508 0.89593 0.93754 0.90463 0.91643 0.90212 0.91501 0.91175 0.90654 0.91288 0.77499 0.94026 0.90623 0.90470 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.10 -2.24 5.09 -26.73 -0.14 -2.38 16 11 C 0.06 1.04 4.96 -3.82 -0.02 1.02 16 12 N -0.54 -8.66 4.71 -234.46 -1.10 -9.76 16 13 C 0.06 0.83 5.41 -3.77 -0.02 0.80 16 14 C 0.06 0.79 4.97 -3.77 -0.02 0.78 16 15 N -0.53 -6.33 4.45 -225.14 -1.00 -7.33 16 16 C 0.09 0.89 2.47 -66.59 -0.16 0.72 16 17 H 0.05 0.64 8.02 -51.93 -0.42 0.23 16 18 C -0.12 -0.95 5.97 -25.61 -0.15 -1.10 16 19 C -0.12 -0.82 6.83 -25.07 -0.17 -1.00 16 20 C -0.16 -1.09 6.62 -24.74 -0.16 -1.25 16 21 C 0.10 0.89 2.72 -25.07 -0.07 0.82 16 22 H 0.07 0.69 6.92 -51.93 -0.36 0.33 16 23 O -0.56 -5.30 12.87 -35.23 -0.45 -5.75 16 24 C 0.06 0.70 5.41 -3.76 -0.02 0.68 16 25 C 0.06 0.76 5.61 -3.77 -0.02 0.74 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 0.99 6.50 -51.93 -0.34 0.65 16 31 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 1.36 6.34 -51.93 -0.33 1.03 16 35 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.08 0.93 5.91 -51.93 -0.31 0.62 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.69 7.21 -51.93 -0.37 0.32 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.38 1.97 9.12 45.56 0.42 2.38 16 44 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.75 7.03 -51.94 -0.37 0.39 16 46 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 47 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 356.78 15.07 5.38 5.38 Total: -1.00 -31.78 356.78 -10.92 -42.69 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.95 Total: -1.99 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -1.51 Total: -13.54 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -1.37 Total: -43.85 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.45 Total: -5.75 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.78 -10.92 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609572712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.548 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds