Wall clock time and date at job start Tue Mar 31 2020 05:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47576 * 2 1 4 4 C 1.52996 * 109.47120 * 120.00314 * 2 1 3 5 5 C 1.53003 * 109.47429 * 59.99290 * 4 2 1 6 6 C 1.53006 * 109.46839 * 60.00343 * 5 4 2 7 7 C 1.52996 * 109.46830 * 300.00024 * 6 5 4 8 8 H 1.08998 * 109.47355 * 299.99913 * 7 6 5 9 9 N 1.46504 * 109.47169 * 180.02562 * 7 6 5 10 10 C 1.34776 * 119.99805 * 84.99986 * 9 7 6 11 11 O 1.21284 * 120.00396 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00114 * 180.02562 * 10 9 7 13 13 H 1.09008 * 109.46812 * 319.99544 * 12 10 9 14 14 N 1.46894 * 109.47159 * 200.00163 * 12 10 9 15 15 C 1.53001 * 109.47337 * 79.99170 * 12 10 9 16 16 C 1.53000 * 109.46886 * 185.00101 * 15 12 10 17 17 C 1.50703 * 109.46912 * 180.02562 * 16 15 12 18 18 H 1.07996 * 119.99751 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00001 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99923 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00006 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47093 * 90.00088 * 21 19 17 23 23 H 1.48500 * 109.47049 * 210.00797 * 21 19 17 24 24 H 1.48504 * 109.47189 * 330.00185 * 21 19 17 25 25 C 1.53003 * 109.47429 * 60.00337 * 7 6 5 26 26 H 1.09006 * 109.46926 * 300.00363 * 1 2 3 27 27 H 1.09004 * 109.47099 * 59.99514 * 1 2 3 28 28 H 1.08996 * 109.47500 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47525 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46669 * 299.99955 * 3 2 1 31 31 H 1.08998 * 109.47235 * 60.00183 * 3 2 1 32 32 H 1.09002 * 109.47374 * 299.99611 * 4 2 1 33 33 H 1.08998 * 109.47355 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.47198 * 300.00520 * 5 4 2 35 35 H 1.08999 * 109.46945 * 179.97438 * 5 4 2 36 36 H 1.08996 * 109.46806 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.47081 * 60.00105 * 6 5 4 38 38 H 0.96998 * 120.00368 * 265.00278 * 9 7 6 39 39 H 1.00901 * 110.99935 * 299.98820 * 14 12 10 40 40 H 1.00898 * 111.00554 * 63.94653 * 14 12 10 41 41 H 1.09001 * 109.46652 * 65.00446 * 15 12 10 42 42 H 1.08992 * 109.47514 * 305.00536 * 15 12 10 43 43 H 1.09002 * 109.47398 * 300.00496 * 16 15 12 44 44 H 1.09001 * 109.47194 * 60.00677 * 16 15 12 45 45 H 0.97000 * 119.99684 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.47198 * 59.99480 * 25 7 6 47 47 H 1.08999 * 109.46945 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2492 6 6 2.0399 -2.8851 0.0000 7 6 1.5299 -2.1638 -1.2492 8 1 0.4399 -2.1637 -1.2492 9 7 2.0176 -2.8548 -2.4454 10 6 1.3402 -3.9113 -2.9366 11 8 0.3271 -4.2904 -2.3881 12 6 1.8422 -4.6225 -4.1668 13 1 2.2145 -3.8902 -4.8833 14 7 0.7438 -5.3862 -4.7734 15 6 2.9734 -5.5767 -3.7784 16 6 3.5664 -6.2053 -5.0410 17 6 4.6802 -7.1457 -4.6584 18 1 4.9389 -7.2816 -3.6188 19 6 5.3689 -7.8324 -5.6357 20 7 6.3405 -8.6533 -5.3018 21 14 4.9209 -7.5978 -7.4340 22 1 5.7212 -6.4834 -8.0022 23 1 5.2097 -8.8470 -8.1831 24 1 3.4754 -7.2764 -7.5462 25 6 2.0400 -0.7213 -1.2493 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9562 -0.8901 31 1 1.6769 1.9563 0.8900 32 1 1.6767 -0.2075 2.1392 33 1 3.1300 -0.7217 1.2490 34 1 0.4399 -2.1637 1.2492 35 1 1.8936 -2.6777 2.1390 36 1 1.6768 -3.9128 0.0003 37 1 3.1298 -2.8852 0.0000 38 1 2.8281 -2.5519 -2.8840 39 1 0.3812 -6.0724 -4.1285 40 1 0.0118 -4.7719 -5.0971 41 1 2.5808 -6.3614 -3.1318 42 1 3.7493 -5.0240 -3.2489 43 1 2.7904 -6.7581 -5.5706 44 1 3.9590 -5.4206 -5.6877 45 1 6.8252 -9.1362 -5.9894 46 1 3.1300 -0.7214 -1.2493 47 1 1.6762 -0.2074 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691608084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:33 Heat of formation + Delta-G solvation = -79.526807 kcal Electronic energy + Delta-G solvation = -23004.946579 eV Core-core repulsion = 19799.663923 eV Total energy + Delta-G solvation = -3205.282656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.46308 -39.08290 -35.43297 -34.78099 -32.80051 -32.69985 -30.48697 -29.90918 -27.65885 -26.70261 -26.58495 -23.86087 -22.40957 -21.29490 -20.43786 -19.90292 -18.62696 -17.17207 -16.66028 -16.44825 -15.55971 -15.20689 -15.03512 -14.65416 -14.48153 -14.21719 -14.10529 -13.58210 -13.52114 -13.32310 -12.82868 -12.57850 -12.39947 -12.36504 -12.19456 -11.77242 -11.70121 -11.62817 -11.37614 -11.22405 -11.03338 -10.88600 -10.76617 -10.47812 -10.31912 -10.26987 -9.90121 -9.75865 -9.55392 -9.09389 -9.01442 -8.49035 -8.36066 -5.98479 -3.95990 2.75452 3.23483 3.36705 3.44578 3.52879 4.32618 4.38684 4.48700 4.52517 4.79200 4.84004 4.86376 5.01569 5.08368 5.11913 5.20548 5.23834 5.35565 5.36138 5.38130 5.41111 5.43917 5.54160 5.63704 5.67885 5.70940 5.75708 5.79027 5.87649 5.97140 5.99259 6.08951 6.12442 6.28335 6.31772 6.48772 6.54820 6.89329 7.28250 7.37973 7.56568 7.62686 7.68960 7.87998 8.31465 8.59259 9.06372 9.64645 11.15062 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026406 B = 0.003314 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.116729 B = 8446.584314 C = 8710.069333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.130 4.130 7 C 0.143 3.857 8 H 0.087 0.913 9 N -0.727 5.727 10 C 0.485 3.515 11 O -0.553 6.553 12 C 0.074 3.926 13 H 0.097 0.903 14 N -0.811 5.811 15 C -0.086 4.086 16 C -0.004 4.004 17 C -0.521 4.521 18 H 0.069 0.931 19 C 0.065 3.935 20 N -0.907 5.907 21 Si 0.879 3.121 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.260 1.260 25 C -0.116 4.116 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.401 0.599 39 H 0.349 0.651 40 H 0.334 0.666 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.008 0.992 45 H 0.262 0.738 46 H 0.069 0.931 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.610 20.733 10.640 25.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.169 4.169 7 C 0.038 3.962 8 H 0.105 0.895 9 N -0.379 5.379 10 C 0.270 3.730 11 O -0.431 6.431 12 C -0.042 4.042 13 H 0.115 0.885 14 N -0.339 5.339 15 C -0.125 4.125 16 C -0.042 4.042 17 C -0.559 4.559 18 H 0.087 0.913 19 C -0.135 4.135 20 N -0.546 5.546 21 Si 0.707 3.293 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.184 1.184 25 C -0.154 4.154 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.235 0.765 39 H 0.164 0.836 40 H 0.146 0.854 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.679 20.068 10.404 25.001 hybrid contribution -0.192 0.613 -0.319 0.717 sum -10.872 20.681 10.085 25.448 Atomic orbital electron populations 1.22013 0.94555 1.02325 1.01627 1.20471 0.95792 0.95055 0.94759 1.21860 1.01051 0.95153 1.01759 1.21635 1.00705 0.95435 0.96936 1.21541 1.01115 0.95305 0.97672 1.21925 1.01104 0.99951 0.93917 1.20993 0.99909 0.90750 0.84562 0.89484 1.46254 1.29367 1.32583 1.29650 1.22588 0.83602 0.79639 0.87135 1.90643 1.25649 1.65327 1.61454 1.21858 0.94844 0.96258 0.91207 0.88548 1.59027 1.13648 1.18295 1.42951 1.21452 0.93543 0.96655 1.00812 1.19487 0.96193 0.95739 0.92759 1.21188 1.15535 1.23907 0.95269 0.91333 1.25018 0.94663 0.94734 0.99118 1.69925 1.22690 1.28461 1.33553 0.86770 0.79935 0.77360 0.85259 1.20523 1.21621 1.18393 1.21873 1.01195 0.94312 0.98027 0.92657 0.92743 0.91857 0.92555 0.92639 0.92577 0.91922 0.91788 0.91599 0.91770 0.91379 0.91666 0.76462 0.83645 0.85392 0.92274 0.92255 0.94798 0.97379 0.92853 0.91213 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 7.78 37.16 0.29 -0.84 16 2 C -0.06 -0.45 0.77 -154.51 -0.12 -0.57 16 3 C -0.14 -0.91 8.47 37.16 0.31 -0.59 16 4 C -0.11 -0.83 4.73 -26.73 -0.13 -0.96 16 5 C -0.12 -1.06 5.65 -26.73 -0.15 -1.21 16 6 C -0.13 -1.44 5.49 -26.73 -0.15 -1.59 16 7 C 0.14 1.54 2.18 -67.93 -0.15 1.39 16 8 H 0.09 1.09 5.86 -51.93 -0.30 0.78 16 9 N -0.73 -8.71 5.08 -53.80 -0.27 -8.98 16 10 C 0.48 7.30 7.03 -10.98 -0.08 7.22 16 11 O -0.55 -9.84 15.91 5.55 0.09 -9.75 16 12 C 0.07 1.17 3.15 -68.87 -0.22 0.95 16 13 H 0.10 1.38 8.14 -51.92 -0.42 0.96 16 14 N -0.81 -12.86 8.44 -5.65 -0.05 -12.91 16 15 C -0.09 -1.67 4.78 -26.73 -0.13 -1.80 16 16 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 17 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 18 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -28.32 13.96 55.43 0.77 -27.55 16 21 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 25 C -0.12 -0.97 4.20 -26.73 -0.11 -1.08 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.60 6.43 -51.93 -0.33 0.27 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.40 4.07 8.60 -40.82 -0.35 3.72 16 39 H 0.35 5.70 8.58 -39.29 -0.34 5.36 16 40 H 0.33 4.57 9.06 -39.29 -0.36 4.21 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.03 0.83 6.81 -51.93 -0.35 0.48 16 44 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -32.55 361.06 -8.45 -41.00 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -8.61 Total: 8.12 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -1.16 Total: -12.73 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.45 Total: -49.44 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.55 -8.45 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691608084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.524 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds