Wall clock time and date at job start Tue Mar 31 2020 05:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 C 1.52997 * 109.47269 * 239.99656 * 2 1 3 5 5 C 1.53002 * 109.47415 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.46972 * 59.99860 * 5 4 2 7 7 C 1.52997 * 109.47165 * 300.00293 * 6 5 4 8 8 H 1.09000 * 109.47140 * 299.99954 * 7 6 5 9 9 N 1.46506 * 109.47277 * 180.02562 * 7 6 5 10 10 C 1.34780 * 120.00088 * 84.99368 * 9 7 6 11 11 O 1.21287 * 120.00032 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00373 * 180.02562 * 10 9 7 13 13 H 1.09007 * 109.46746 * 40.00615 * 12 10 9 14 14 N 1.46895 * 109.47185 * 160.00110 * 12 10 9 15 15 C 1.53000 * 109.47203 * 280.00783 * 12 10 9 16 16 C 1.53003 * 109.46908 * 174.99729 * 15 12 10 17 17 C 1.50700 * 109.46871 * 180.02562 * 16 15 12 18 18 H 1.07999 * 120.00204 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99774 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00010 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99884 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47128 * 59.99745 * 21 19 17 23 23 H 1.48502 * 109.47018 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47108 * 299.99729 * 21 19 17 25 25 C 1.52999 * 109.47592 * 60.00300 * 7 6 5 26 26 H 1.09001 * 109.47362 * 300.00732 * 1 2 3 27 27 H 1.09002 * 109.46716 * 60.00091 * 1 2 3 28 28 H 1.09000 * 109.47486 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99641 * 3 2 1 31 31 H 1.08996 * 109.46952 * 59.99813 * 3 2 1 32 32 H 1.09000 * 109.47140 * 300.00547 * 4 2 1 33 33 H 1.09001 * 109.47230 * 59.99691 * 4 2 1 34 34 H 1.08992 * 109.46974 * 180.02562 * 5 4 2 35 35 H 1.08996 * 109.46550 * 300.00288 * 5 4 2 36 36 H 1.09000 * 109.47054 * 60.00300 * 6 5 4 37 37 H 1.09001 * 109.46997 * 180.02562 * 6 5 4 38 38 H 0.97000 * 120.00161 * 265.00272 * 9 7 6 39 39 H 1.00895 * 111.00142 * 296.04979 * 14 12 10 40 40 H 1.00907 * 110.99852 * 60.00723 * 14 12 10 41 41 H 1.08995 * 109.47300 * 294.99566 * 15 12 10 42 42 H 1.08998 * 109.47064 * 54.99683 * 15 12 10 43 43 H 1.09000 * 109.46971 * 299.99517 * 16 15 12 44 44 H 1.08998 * 109.47333 * 59.99540 * 16 15 12 45 45 H 0.97000 * 119.99957 * 180.02562 * 20 19 17 46 46 H 1.08993 * 109.47839 * 180.02562 * 25 7 6 47 47 H 1.09000 * 109.47160 * 59.99666 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7221 1.2496 8 1 3.9331 0.3054 1.2497 9 7 4.0578 -1.4126 2.4458 10 6 5.2798 -1.1268 2.9373 11 8 5.9751 -0.2976 2.3895 12 6 5.7824 -1.8375 4.1675 13 1 5.4942 -2.8878 4.1235 14 7 7.2464 -1.7337 4.2292 15 6 5.1723 -1.1930 5.4138 16 6 5.5828 -1.9907 6.6532 17 6 4.9813 -1.3563 7.8808 18 1 4.3680 -0.4723 7.7864 19 6 5.2149 -1.9038 9.1245 20 7 5.9621 -2.9799 9.2394 21 14 4.4699 -1.1170 10.6462 22 1 2.9897 -1.1140 10.5277 23 1 4.8692 -1.8906 11.8493 24 1 4.9593 0.2795 10.7713 25 6 2.0395 -0.7216 1.2494 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 -1.7489 -1.2492 33 1 1.6767 -0.2076 -2.1392 34 1 3.9333 -1.2353 -2.1390 35 1 3.9336 0.3056 -1.2487 36 1 3.7158 -2.4709 0.0002 37 1 5.1695 -1.4434 0.0008 38 1 3.5017 -2.0756 2.8842 39 1 7.6757 -2.2085 3.4494 40 1 7.5390 -0.7688 4.2708 41 1 5.5317 -0.1682 5.5059 42 1 4.0858 -1.1905 5.3267 43 1 5.2232 -3.0156 6.5612 44 1 6.6692 -1.9933 6.7403 45 1 6.1261 -3.3653 10.1143 46 1 1.6761 -0.2073 2.1390 47 1 1.6758 -1.7491 1.2492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691608086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:36 Heat of formation + Delta-G solvation = -82.519070 kcal Electronic energy + Delta-G solvation = -22944.935664 eV Core-core repulsion = 19739.523253 eV Total energy + Delta-G solvation = -3205.412410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42091 -39.02390 -35.30403 -34.71520 -32.81640 -32.71775 -30.13777 -29.80197 -27.60977 -26.63900 -26.28796 -23.88761 -22.44928 -21.38531 -20.47056 -19.87984 -18.57951 -17.08329 -16.48257 -16.11269 -15.49040 -15.21858 -14.99049 -14.47901 -14.45574 -14.39189 -14.15677 -13.63461 -13.35527 -13.33723 -12.81792 -12.34328 -12.29413 -12.16819 -11.99333 -11.74383 -11.69358 -11.52404 -11.35034 -11.21992 -10.86906 -10.82505 -10.61043 -10.55936 -10.46003 -10.28587 -10.04315 -9.77248 -9.35117 -9.00977 -8.95434 -8.32457 -8.17360 -5.92674 -3.94879 2.83157 3.29222 3.36687 3.41225 3.43714 4.34471 4.40691 4.50417 4.52720 4.84288 4.85212 4.92734 5.05826 5.08333 5.17273 5.21934 5.26653 5.38924 5.41382 5.42718 5.44158 5.56378 5.58327 5.67268 5.69352 5.76298 5.80254 5.86526 5.89356 5.97360 6.00731 6.08016 6.11813 6.28990 6.45176 6.58184 6.68219 7.10837 7.41996 7.66423 7.77247 7.82732 7.97714 8.14635 8.38593 8.49767 9.13017 9.68130 11.18213 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.003375 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.627799 B = 8293.191037 C = 9133.123979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C -0.149 4.149 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.128 4.128 7 C 0.142 3.858 8 H 0.088 0.912 9 N -0.728 5.728 10 C 0.484 3.516 11 O -0.555 6.555 12 C 0.078 3.922 13 H 0.097 0.903 14 N -0.807 5.807 15 C -0.095 4.095 16 C 0.031 3.969 17 C -0.523 4.523 18 H 0.051 0.949 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.117 4.117 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.401 0.599 39 H 0.333 0.667 40 H 0.347 0.653 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.013 0.987 44 H 0.035 0.965 45 H 0.260 0.740 46 H 0.071 0.929 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.207 3.149 -22.152 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.206 4.206 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.167 4.167 7 C 0.037 3.963 8 H 0.106 0.894 9 N -0.379 5.379 10 C 0.270 3.730 11 O -0.433 6.433 12 C -0.038 4.038 13 H 0.115 0.885 14 N -0.335 5.335 15 C -0.133 4.133 16 C -0.006 4.006 17 C -0.561 4.561 18 H 0.069 0.931 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.717 3.283 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.155 4.155 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.235 0.765 39 H 0.145 0.855 40 H 0.161 0.839 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.031 0.969 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.669 3.224 -21.692 23.582 hybrid contribution -0.821 0.550 0.157 1.000 sum -9.489 3.774 -21.536 23.834 Atomic orbital electron populations 1.21862 0.94327 1.01803 1.01853 1.20473 0.95359 0.95592 0.94657 1.22016 1.01709 0.95123 1.01739 1.21626 0.95541 1.00395 0.97069 1.21537 0.95518 1.01141 0.97457 1.21910 1.01138 0.99435 0.94170 1.20987 0.93416 0.97526 0.84392 0.89406 1.46262 1.18403 1.43786 1.29456 1.22721 0.81045 0.82795 0.86445 1.90633 1.56656 1.34429 1.61568 1.21833 0.89768 1.00196 0.92022 0.88547 1.58997 1.04424 1.21181 1.48888 1.21646 0.98233 0.99878 0.93545 1.19011 0.98140 0.94216 0.89196 1.21250 1.31004 1.11978 0.91916 0.93055 1.24991 0.95342 0.95054 0.98926 1.69963 1.38265 1.21154 1.23827 0.86712 0.79529 0.79420 0.82624 1.20370 1.21334 1.20319 1.21878 0.94186 1.01210 0.98210 0.92485 0.92617 0.92619 0.91883 0.92687 0.92555 0.91908 0.91931 0.91916 0.91506 0.91936 0.91643 0.76464 0.85531 0.83869 0.92912 0.92873 0.96909 0.94687 0.93047 0.91068 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.47 37.16 0.31 -0.67 16 2 C -0.06 -0.47 0.77 -154.51 -0.12 -0.59 16 3 C -0.15 -1.24 7.78 37.16 0.29 -0.95 16 4 C -0.11 -0.81 4.73 -26.73 -0.13 -0.93 16 5 C -0.12 -1.00 5.65 -26.73 -0.15 -1.15 16 6 C -0.13 -1.31 5.49 -26.73 -0.15 -1.46 16 7 C 0.14 1.58 2.18 -67.93 -0.15 1.43 16 8 H 0.09 1.17 5.86 -51.93 -0.30 0.87 16 9 N -0.73 -9.12 5.08 -53.80 -0.27 -9.39 16 10 C 0.48 7.63 7.03 -10.99 -0.08 7.56 16 11 O -0.56 -10.23 15.91 5.55 0.09 -10.14 16 12 C 0.08 1.31 3.15 -68.87 -0.22 1.09 16 13 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 14 N -0.81 -13.81 8.44 -5.66 -0.05 -13.86 16 15 C -0.09 -1.92 4.78 -26.73 -0.13 -2.05 16 16 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 17 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 18 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 21 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C -0.12 -1.06 4.20 -26.73 -0.11 -1.17 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.59 4.81 -51.93 -0.25 0.34 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.60 6.43 -51.93 -0.33 0.26 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.40 4.32 8.60 -40.82 -0.35 3.97 16 39 H 0.33 4.96 9.06 -39.29 -0.36 4.61 16 40 H 0.35 6.05 8.58 -39.29 -0.34 5.71 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -31.83 364.67 -8.83 -40.66 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -8.64 Total: 8.57 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.17 Total: -11.83 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.42 Total: -49.55 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.83 -8.83 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691608086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.859 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds