Wall clock time and date at job start Tue Mar 31 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47263 * 2 1 4 4 C 1.52999 * 109.47263 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47263 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47009 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47281 * 55.00374 * 6 5 4 8 8 C 1.53011 * 109.46693 * 175.00193 * 6 5 4 9 9 N 1.46494 * 109.46998 * 294.99758 * 6 5 4 10 10 C 1.34776 * 119.99787 * 155.00154 * 9 6 5 11 11 O 1.21281 * 120.00306 * 0.02562 * 10 9 6 12 12 C 1.50706 * 120.00275 * 180.02562 * 10 9 6 13 13 N 1.46501 * 109.46995 * 180.02562 * 12 10 9 14 14 C 1.36938 * 119.99757 * 269.99634 * 13 12 10 15 15 H 1.08000 * 120.00000 * 192.63017 * 14 13 12 16 16 C 1.38815 * 120.00032 * 12.63239 * 14 13 12 17 17 N 1.31618 * 120.00211 * 25.31449 * 16 14 13 18 18 Si 1.86801 * 119.99812 * 205.31677 * 16 14 13 19 19 H 1.48500 * 109.47356 * 89.99718 * 18 16 14 20 20 H 1.48497 * 109.46948 * 210.00071 * 18 16 14 21 21 H 1.48498 * 109.47105 * 329.99923 * 18 16 14 22 22 C 1.46500 * 119.99988 * 90.00381 * 13 12 10 23 23 C 1.53003 * 117.49522 * 194.07392 * 22 13 12 24 24 C 1.52995 * 117.49701 * 125.45427 * 22 13 12 25 25 H 1.09002 * 109.47443 * 59.99502 * 1 2 3 26 26 H 1.09002 * 109.47142 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46975 * 299.99797 * 1 2 3 28 28 H 1.09003 * 109.46975 * 240.00203 * 2 1 3 29 29 H 1.09002 * 109.47443 * 120.00498 * 2 1 3 30 30 H 1.09003 * 109.46960 * 60.00194 * 3 2 1 31 31 H 1.09002 * 109.47298 * 300.00587 * 3 2 1 32 32 H 1.09001 * 109.46487 * 60.00388 * 4 3 2 33 33 H 1.08996 * 109.47045 * 300.00479 * 4 3 2 34 34 H 1.09003 * 109.46960 * 60.00194 * 5 4 3 35 35 H 1.09002 * 109.47298 * 300.00587 * 5 4 3 36 36 H 1.09002 * 109.46318 * 180.02562 * 8 6 5 37 37 H 1.08997 * 109.47251 * 299.99584 * 8 6 5 38 38 H 1.08992 * 109.46980 * 59.99991 * 8 6 5 39 39 H 0.96999 * 120.00715 * 335.00515 * 9 6 5 40 40 H 1.08999 * 109.46415 * 300.00077 * 12 10 9 41 41 H 1.09002 * 109.46947 * 59.99792 * 12 10 9 42 42 H 0.96991 * 120.00040 * 175.07967 * 17 16 14 43 43 H 1.09000 * 115.54892 * 339.78037 * 22 13 12 44 44 H 1.09003 * 117.50104 * 0.02562 * 23 22 13 45 45 H 1.08998 * 117.49422 * 145.01723 * 23 22 13 46 46 H 1.09003 * 117.49803 * 214.97067 * 24 22 13 47 47 H 1.08998 * 117.50531 * 359.97041 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6101 2.8849 0.0000 7 1 5.9734 2.2951 -0.8416 8 6 6.1200 4.3219 -0.1263 9 7 6.0983 2.3018 1.2521 10 6 7.3203 1.7352 1.3001 11 8 8.0158 1.7085 0.3069 12 6 7.8224 1.1348 2.5879 13 7 9.1657 0.5881 2.3807 14 6 9.3214 -0.7123 1.9808 15 1 10.2952 -1.1775 2.0235 16 6 8.2277 -1.4327 1.5205 17 7 7.1971 -0.8024 0.9982 18 14 8.2186 -3.2967 1.6425 19 1 7.6267 -3.7049 2.9418 20 1 7.4114 -3.8615 0.5315 21 1 9.6108 -3.8055 1.5513 22 6 10.3423 1.4325 2.6014 23 6 11.6834 0.9302 2.0626 24 6 11.4104 0.9171 3.5680 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9336 0.9285 -0.8892 33 1 3.9329 0.9287 0.8908 34 1 3.7164 3.3993 0.8896 35 1 3.7170 3.3983 -0.8904 36 1 7.2101 4.3218 -0.1268 37 1 5.7568 4.7558 -1.0579 38 1 5.7567 4.9117 0.7152 39 1 5.5422 2.3233 2.0465 40 1 7.8589 1.9053 3.3580 41 1 7.1498 0.3372 2.9035 42 1 6.4646 -1.3074 0.6119 43 1 10.1608 2.5070 2.5781 44 1 11.6901 -0.0283 1.5436 45 1 12.3844 1.6744 1.6846 46 1 11.9320 1.6527 4.1804 47 1 11.2376 -0.0500 4.0401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729542734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:31 Heat of formation + Delta-G solvation = -26.318735 kcal Electronic energy + Delta-G solvation = -23353.518766 eV Core-core repulsion = 20150.543385 eV Total energy + Delta-G solvation = -3202.975381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26821 -38.65181 -37.51997 -35.84306 -35.11537 -32.83129 -32.28564 -31.01550 -28.25193 -27.21779 -25.65165 -23.39921 -22.98172 -21.92751 -21.77480 -21.48255 -20.99059 -18.38846 -17.55321 -17.38425 -16.89862 -16.33546 -16.02633 -15.77403 -15.28290 -14.87084 -14.69097 -14.61859 -14.36446 -13.99712 -13.82856 -13.52106 -13.34637 -13.03304 -12.84498 -12.80142 -12.72207 -12.47478 -12.35565 -12.23844 -12.09345 -11.97774 -11.81535 -11.75132 -11.66771 -11.61313 -11.33908 -11.20503 -10.99872 -10.40344 -10.12062 -9.48878 -8.63113 -7.84903 -5.11882 1.43992 1.46123 1.53625 2.47104 2.58579 2.89195 3.14471 3.48922 3.52295 3.74250 4.04938 4.11291 4.26410 4.28200 4.35607 4.38693 4.44477 4.51752 4.55417 4.59828 4.76104 4.81189 4.81748 4.90909 4.92164 4.95760 4.97115 4.99017 5.05016 5.11591 5.14227 5.21649 5.27140 5.32189 5.35709 5.38262 5.45294 5.50973 5.52337 5.59547 5.72438 6.16350 6.29634 7.08338 7.26760 7.86329 8.19938 8.30307 9.20049 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.005240 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.581429 B = 5342.347188 C = 6864.760117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C -0.108 4.108 4 C -0.114 4.114 5 C -0.108 4.108 6 C 0.146 3.854 7 H 0.032 0.968 8 C -0.149 4.149 9 N -0.729 5.729 10 C 0.533 3.467 11 O -0.580 6.580 12 C 0.164 3.836 13 N -0.557 5.557 14 C -0.259 4.259 15 H 0.070 0.930 16 C -0.044 4.044 17 N -0.902 5.902 18 Si 0.959 3.041 19 H -0.282 1.282 20 H -0.303 1.303 21 H -0.280 1.280 22 C 0.106 3.894 23 C -0.206 4.206 24 C -0.192 4.192 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.398 0.602 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.244 0.756 43 H 0.101 0.899 44 H 0.067 0.933 45 H 0.099 0.901 46 H 0.112 0.888 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.631 9.063 2.729 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.145 4.145 4 C -0.152 4.152 5 C -0.145 4.145 6 C 0.040 3.960 7 H 0.051 0.949 8 C -0.208 4.208 9 N -0.384 5.384 10 C 0.320 3.680 11 O -0.457 6.457 12 C 0.035 3.965 13 N -0.273 5.273 14 C -0.389 4.389 15 H 0.088 0.912 16 C -0.241 4.241 17 N -0.547 5.547 18 Si 0.790 3.210 19 H -0.208 1.208 20 H -0.231 1.231 21 H -0.205 1.205 22 C -0.003 4.003 23 C -0.245 4.245 24 C -0.232 4.232 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.232 0.768 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.054 0.946 43 H 0.119 0.881 44 H 0.086 0.914 45 H 0.117 0.883 46 H 0.130 0.870 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.303 8.941 1.995 13.787 hybrid contribution 0.040 -1.567 -0.320 1.600 sum -10.264 7.374 1.676 12.748 Atomic orbital electron populations 1.21741 0.94545 1.01802 1.02312 1.21559 0.96856 0.97347 1.01079 1.21548 0.93867 0.96438 1.02655 1.21490 0.96064 0.96820 1.00778 1.21774 0.92032 0.96828 1.03910 1.20734 0.94602 0.93372 0.87243 0.94941 1.22071 0.99873 0.96023 1.02802 1.45987 1.18062 1.61590 1.12752 1.21747 0.80590 0.73695 0.91997 1.90476 1.58839 1.58208 1.38221 1.20607 0.86781 0.96823 0.92333 1.43644 0.99768 1.08651 1.75225 1.19277 0.94904 0.86645 1.38088 0.91175 1.25375 0.97876 1.01175 0.99646 1.69982 1.10757 1.33868 1.40121 0.85378 0.77055 0.81849 0.76756 1.20840 1.23067 1.20536 1.21176 0.83421 0.93373 1.02334 1.23100 1.01340 1.02584 0.97443 1.23361 1.05269 1.02941 0.91629 0.92127 0.92812 0.92025 0.93436 0.93237 0.90839 0.91247 0.94932 0.93419 0.89529 0.89579 0.95566 0.90741 0.90777 0.76770 0.90939 0.90515 0.94623 0.88111 0.91411 0.88263 0.86999 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.91 71.98 0.71 -1.85 16 2 C -0.13 -2.93 5.93 30.59 0.18 -2.75 16 3 C -0.11 -2.26 5.21 30.59 0.16 -2.10 16 4 C -0.11 -3.12 5.10 30.59 0.16 -2.97 16 5 C -0.11 -2.57 4.75 30.59 0.15 -2.42 16 6 C 0.15 4.78 2.57 45.00 0.12 4.89 16 7 H 0.03 1.38 7.58 -2.39 -0.02 1.36 16 8 C -0.15 -4.21 9.48 71.99 0.68 -3.53 16 9 N -0.73 -26.38 4.53 -442.52 -2.00 -28.38 16 10 C 0.53 24.98 5.76 87.66 0.50 25.48 16 11 O -0.58 -33.33 15.51 -3.03 -0.05 -33.38 16 12 C 0.16 7.53 5.48 85.63 0.47 8.00 16 13 N -0.56 -28.05 2.38 -682.33 -1.62 -29.68 16 14 C -0.26 -14.43 8.90 84.03 0.75 -13.68 16 15 H 0.07 3.94 6.27 -2.91 -0.02 3.92 16 16 C -0.04 -2.48 4.83 84.86 0.41 -2.07 16 17 N -0.90 -51.59 8.85 21.65 0.19 -51.40 16 18 Si 0.96 46.06 29.63 68.60 2.03 48.09 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 20 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 22 C 0.11 4.55 6.60 44.99 0.30 4.84 16 23 C -0.21 -8.34 9.77 30.59 0.30 -8.04 16 24 C -0.19 -6.96 10.13 30.59 0.31 -6.65 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.53 7.75 -2.39 -0.02 1.51 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 36 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.40 11.91 8.60 -92.71 -0.80 11.12 16 40 H 0.07 2.75 8.07 -2.39 -0.02 2.73 16 41 H 0.08 3.77 6.62 -2.39 -0.02 3.75 16 42 H 0.24 13.97 8.32 -92.72 -0.77 13.20 16 43 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 44 H 0.07 3.13 6.44 -2.39 -0.02 3.12 16 45 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 46 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 47 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -69.79 374.72 3.86 -65.93 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.12 Total: 31.65 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 5.19 Total: -2.84 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -3.44 Total: -109.46 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.05 Total: -33.38 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -69.79 3.86 -65.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729542734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.615 kcal (2) G-P(sol) polarization free energy of solvation -69.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds