Wall clock time and date at job start Tue Mar 31 2020 05:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00132 * 2 1 4 4 H 1.48508 * 109.46971 * 270.00680 * 3 2 1 5 5 H 1.48501 * 109.46839 * 30.00124 * 3 2 1 6 6 H 1.48494 * 109.47253 * 150.00350 * 3 2 1 7 7 C 1.37877 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00083 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99692 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47159 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00500 * 171.72936 * 10 9 7 12 12 C 1.52997 * 109.46738 * 286.27092 * 11 10 9 13 13 H 1.08999 * 109.47584 * 306.79856 * 12 11 10 14 14 O 1.42903 * 109.47685 * 66.80328 * 12 11 10 15 15 C 1.53003 * 109.46931 * 186.79998 * 12 11 10 16 16 N 1.46903 * 109.47020 * 179.97438 * 15 12 11 17 17 C 1.48536 * 110.99752 * 52.60807 * 16 15 12 18 18 C 1.54944 * 103.22433 * 159.71925 * 17 16 15 19 19 C 1.54595 * 102.92020 * 322.58059 * 18 17 16 20 20 C 1.47906 * 110.99798 * 169.99878 * 16 15 12 21 21 C 1.46903 * 110.99860 * 295.68641 * 10 9 7 22 22 C 1.53007 * 109.46859 * 164.01622 * 21 10 9 23 23 C 1.52994 * 117.51606 * 116.05033 * 22 21 10 24 24 C 1.52992 * 60.00220 * 107.47726 * 23 22 21 25 25 H 0.97003 * 120.00133 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47087 * 60.00540 * 9 7 2 27 27 H 1.08996 * 109.47404 * 300.00106 * 9 7 2 28 28 H 1.08999 * 109.46749 * 46.26179 * 11 10 9 29 29 H 1.08994 * 109.47020 * 166.26952 * 11 10 9 30 30 H 0.96699 * 113.99858 * 59.99457 * 14 12 11 31 31 H 1.08996 * 109.47121 * 299.99571 * 15 12 11 32 32 H 1.08996 * 109.47284 * 60.00065 * 15 12 11 33 33 H 1.09003 * 110.66268 * 278.14961 * 17 16 15 34 34 H 1.08992 * 110.67219 * 41.28438 * 17 16 15 35 35 H 1.08999 * 110.71918 * 204.22844 * 18 17 16 36 36 H 1.08994 * 110.72296 * 80.93826 * 18 17 16 37 37 H 1.08999 * 110.30998 * 263.03896 * 19 18 17 38 38 H 1.09005 * 110.30326 * 140.87635 * 19 18 17 39 39 H 1.08996 * 109.91673 * 333.51440 * 20 16 15 40 40 H 1.09001 * 109.91399 * 94.60923 * 20 16 15 41 41 H 1.08994 * 109.47278 * 44.01411 * 21 10 9 42 42 H 1.08998 * 109.46876 * 284.01021 * 21 10 9 43 43 H 1.09001 * 115.55220 * 330.34560 * 22 21 10 44 44 H 1.09004 * 117.50030 * 214.96590 * 23 22 21 45 45 H 1.08998 * 117.50544 * 359.97438 * 23 22 21 46 46 H 1.09002 * 117.50075 * 252.50521 * 24 23 22 47 47 H 1.09000 * 117.50096 * 107.48481 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5162 -4.8978 0.1967 12 6 1.0742 -5.0198 1.6564 13 1 1.9301 -4.8532 2.3104 14 8 0.0669 -4.0444 1.9323 15 6 0.5091 -6.4201 1.9028 16 7 0.0852 -6.5374 3.3044 17 6 -0.8298 -5.4287 3.6784 18 6 -1.5610 -5.9790 4.9287 19 6 -1.7501 -7.4750 4.5880 20 6 -0.6806 -7.7836 3.5240 21 6 2.9995 -3.6296 -1.2365 22 6 4.2248 -4.5258 -1.0455 23 6 4.3250 -5.7808 -1.9148 24 6 5.2409 -4.5861 -2.1878 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 0.6420 -4.9439 -0.4526 29 1 2.1938 -5.7159 -0.0473 30 1 -0.7259 -4.1324 1.3857 31 1 -0.3469 -6.5867 1.2489 32 1 1.2773 -7.1641 1.6924 33 1 -0.2643 -4.5308 3.9275 34 1 -1.5389 -5.2277 2.8755 35 1 -2.5255 -5.4881 5.0586 36 1 -0.9438 -5.8613 5.8193 37 1 -2.7474 -7.6477 4.1833 38 1 -1.5895 -8.0882 5.4749 39 1 -1.1593 -8.0938 2.5953 40 1 -0.0152 -8.5705 3.8794 41 1 3.3239 -2.6159 -1.4713 42 1 2.3913 -4.0152 -2.0546 43 1 4.6083 -4.5872 -0.0270 44 1 4.7744 -6.6678 -1.4684 45 1 3.5178 -5.9685 -2.6228 46 1 5.0363 -3.9875 -3.0755 47 1 6.2928 -4.6870 -1.9208 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749117121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:21 Heat of formation + Delta-G solvation = -12.148248 kcal Electronic energy + Delta-G solvation = -23381.946076 eV Core-core repulsion = 20179.585173 eV Total energy + Delta-G solvation = -3202.360903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.35368 -37.92439 -36.63138 -34.69047 -32.50055 -32.13460 -29.27136 -28.70023 -27.21967 -25.83028 -23.61795 -22.17389 -21.61759 -20.90434 -20.77609 -20.43161 -19.64674 -16.55017 -16.21481 -16.07834 -15.53733 -15.24367 -15.10423 -14.63257 -14.17770 -14.02983 -13.72121 -13.46995 -13.15473 -12.79078 -12.36904 -12.22165 -12.05553 -11.67605 -11.57957 -11.39408 -11.28665 -11.26717 -11.18206 -10.86113 -10.81712 -10.65850 -10.53165 -10.43439 -10.37208 -10.06567 -9.75848 -9.47657 -9.30393 -8.69483 -8.31462 -8.23816 -7.16555 -5.93203 -3.91533 3.36544 3.43029 3.47885 4.03138 4.13613 4.49471 4.62070 4.73900 4.83818 4.85970 4.96386 5.12944 5.27046 5.29362 5.36224 5.38900 5.43797 5.52404 5.62366 5.71441 5.73728 5.76084 5.79188 5.81037 5.86512 5.90567 5.93871 6.04967 6.10399 6.15079 6.23227 6.32868 6.33886 6.45416 6.52891 6.64470 6.85174 7.01096 7.14203 7.44810 7.54703 7.90257 8.14637 8.28743 8.34848 8.67015 9.15506 9.70524 11.17834 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.005245 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.501843 B = 5336.725853 C = 7360.147868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.173 3.827 10 N -0.526 5.526 11 C 0.029 3.971 12 C 0.117 3.883 13 H 0.109 0.891 14 O -0.537 6.537 15 C 0.017 3.983 16 N -0.514 5.514 17 C 0.048 3.952 18 C -0.132 4.132 19 C -0.131 4.131 20 C 0.034 3.966 21 C 0.089 3.911 22 C -0.132 4.132 23 C -0.192 4.192 24 C -0.184 4.184 25 H 0.258 0.742 26 H -0.022 1.022 27 H 0.076 0.924 28 H 0.021 0.979 29 H 0.068 0.932 30 H 0.363 0.637 31 H 0.032 0.968 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.039 0.961 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.017 0.983 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 -15.520 3.081 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.049 3.951 10 N -0.250 5.250 11 C -0.101 4.101 12 C 0.057 3.943 13 H 0.127 0.873 14 O -0.341 6.341 15 C -0.112 4.112 16 N -0.238 5.238 17 C -0.080 4.080 18 C -0.171 4.171 19 C -0.169 4.169 20 C -0.094 4.094 21 C -0.039 4.039 22 C -0.151 4.151 23 C -0.229 4.229 24 C -0.222 4.222 25 H 0.068 0.932 26 H -0.004 1.004 27 H 0.094 0.906 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.211 0.789 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.035 0.965 43 H 0.126 0.874 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.726 -15.114 4.219 15.709 hybrid contribution -1.207 0.428 -1.860 2.258 sum -0.481 -14.686 2.360 14.882 Atomic orbital electron populations 1.69952 1.05935 1.26400 1.51562 1.24924 0.94798 0.98994 0.95770 0.86593 0.79945 0.83591 0.77839 1.20986 1.21356 1.19843 1.21191 0.93318 0.90283 1.49354 0.92216 1.20244 0.90530 0.86681 0.97679 1.62067 1.26428 1.02175 1.34291 1.22638 0.97264 0.94558 0.95638 1.21895 0.91319 0.84937 0.96104 0.87278 1.86827 1.29109 1.54837 1.63374 1.23005 0.99875 0.99668 0.88693 1.64796 1.36673 1.02084 1.20290 1.23406 0.94168 0.95230 0.95147 1.22624 1.00405 0.94710 0.99320 1.22384 0.98277 0.97453 0.98781 1.22885 0.94895 0.93859 0.97795 1.21612 0.91814 0.99643 0.90816 1.22485 0.98507 0.98082 0.96023 1.23012 1.02909 0.92663 1.04361 1.22889 0.96184 1.02033 1.01047 0.93199 1.00389 0.90614 0.96043 0.91321 0.78934 0.94955 0.90208 0.87798 0.93864 0.91383 0.91069 0.91919 0.91433 0.94284 0.90815 0.89169 0.96503 0.87374 0.89550 0.89505 0.89132 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.50 -14.16 8.27 -34.44 -0.28 -14.44 16 8 H 0.06 1.68 7.13 -52.49 -0.37 1.31 16 9 C 0.17 4.41 4.48 -4.97 -0.02 4.38 16 10 N -0.53 -10.98 4.41 -236.07 -1.04 -12.02 16 11 C 0.03 0.49 4.62 -3.83 -0.02 0.47 16 12 C 0.12 1.86 3.25 -26.73 -0.09 1.78 16 13 H 0.11 1.95 8.14 -51.93 -0.42 1.52 16 14 O -0.54 -9.47 6.57 -35.23 -0.23 -9.71 16 15 C 0.02 0.22 4.88 -3.82 -0.02 0.20 16 16 N -0.51 -6.81 5.40 -230.45 -1.24 -8.05 16 17 C 0.05 0.64 4.65 -1.89 -0.01 0.63 16 18 C -0.13 -1.49 7.06 -24.87 -0.18 -1.66 16 19 C -0.13 -1.30 6.93 -25.38 -0.18 -1.48 16 20 C 0.03 0.37 6.70 -2.75 -0.02 0.35 16 21 C 0.09 1.73 5.09 -3.82 -0.02 1.71 16 22 C -0.13 -2.10 4.97 -90.62 -0.45 -2.55 16 23 C -0.19 -2.54 10.02 -26.74 -0.27 -2.80 16 24 C -0.18 -2.50 10.25 -26.74 -0.27 -2.78 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H -0.02 -0.60 8.14 -51.93 -0.42 -1.02 16 27 H 0.08 2.02 4.99 -51.93 -0.26 1.76 16 28 H 0.02 0.37 8.03 -51.93 -0.42 -0.04 16 29 H 0.07 1.05 7.01 -51.93 -0.36 0.69 16 30 H 0.36 5.74 8.33 45.56 0.38 6.12 16 31 H 0.03 0.41 7.81 -51.93 -0.41 0.00 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 1.64 6.84 -51.93 -0.35 1.29 16 34 H 0.04 0.58 6.81 -51.93 -0.35 0.23 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.42 7.57 -51.93 -0.39 0.02 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.97 6.45 -51.93 -0.33 1.63 16 42 H 0.02 0.32 7.79 -51.93 -0.40 -0.08 16 43 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 44 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.09 1.13 8.03 -51.93 -0.42 0.72 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 359.95 15.07 5.42 5.42 Total: -1.00 -29.85 359.95 -11.20 -41.06 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.91 Total: 7.02 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -1.92 Total: -14.68 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -1.55 Total: -46.07 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.23 Total: -9.71 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.85 -11.20 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749117121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.908 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds