Wall clock time and date at job start Tue Mar 31 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 C 1.53002 * 109.47379 * 180.02562 * 5 4 2 7 7 H 1.09004 * 110.32896 * 55.69547 * 6 5 4 8 8 C 1.54902 * 110.37704 * 177.95291 * 6 5 4 9 9 C 1.55262 * 101.59898 * 155.81828 * 8 6 5 10 10 C 1.54312 * 103.08312 * 324.48637 * 9 8 6 11 11 N 1.47446 * 107.23778 * 22.20877 * 10 9 8 12 12 C 1.46900 * 111.00337 * 123.25223 * 11 10 9 13 13 C 1.50701 * 109.46810 * 69.16046 * 12 11 10 14 14 O 1.21278 * 120.00094 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99534 * 180.02562 * 13 12 11 16 16 C 1.46509 * 119.99860 * 180.02562 * 15 13 12 17 17 C 1.50690 * 109.47332 * 179.97438 * 16 15 13 18 18 H 1.08006 * 120.00041 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00220 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00119 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99936 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47715 * 89.99411 * 21 19 17 23 23 H 1.48501 * 109.47048 * 209.99836 * 21 19 17 24 24 H 1.48509 * 109.46872 * 329.99343 * 21 19 17 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 33 33 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 34 34 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 35 35 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 36 36 H 1.09008 * 110.98932 * 273.99235 * 8 6 5 37 37 H 1.08999 * 110.98818 * 37.80651 * 8 6 5 38 38 H 1.09003 * 110.73809 * 206.05065 * 9 8 6 39 39 H 1.09000 * 110.75695 * 82.93367 * 9 8 6 40 40 H 1.08998 * 109.89050 * 262.79827 * 10 9 8 41 41 H 1.09003 * 109.88982 * 141.61303 * 10 9 8 42 42 H 1.08992 * 109.46886 * 189.15897 * 12 11 10 43 43 H 1.09002 * 109.46942 * 309.16178 * 12 11 10 44 44 H 0.96994 * 120.00623 * 359.97438 * 15 13 12 45 45 H 1.09001 * 109.46914 * 300.00008 * 16 15 13 46 46 H 1.08998 * 109.47002 * 59.99477 * 16 15 13 47 47 H 0.97001 * 119.99872 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6353 -2.1954 -1.1881 6 6 2.1458 -2.9167 -2.4371 7 1 3.2231 -2.7840 -2.5373 8 6 1.7917 -4.4233 -2.3724 9 6 1.7913 -4.8088 -3.8764 10 6 1.2276 -3.5456 -4.5605 11 7 1.4511 -2.4144 -3.6416 12 6 2.2290 -1.3523 -4.2935 13 6 1.3904 -0.6992 -5.3619 14 8 0.2567 -1.0812 -5.5610 15 7 1.9008 0.3087 -6.0968 16 6 1.0855 0.9440 -7.1350 17 6 1.8834 2.0334 -7.8038 18 1 2.8967 2.2324 -7.4875 19 6 1.3202 2.7755 -8.8203 20 7 2.0165 3.7266 -9.4037 21 14 -0.4321 2.4309 -9.3679 22 1 -1.3715 3.2639 -8.5750 23 1 -0.5741 2.7600 -10.8090 24 1 -0.7438 0.9945 -9.1552 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6054 -0.2616 -2.1370 33 1 3.1264 -0.6442 -1.2952 34 1 2.0700 -2.6549 -0.3004 35 1 0.5490 -2.2723 -1.1421 36 1 2.5524 -4.9801 -1.8251 37 1 0.8065 -4.5742 -1.9311 38 1 1.1421 -5.6660 -4.0550 39 1 2.8040 -5.0152 -4.2226 40 1 0.1603 -3.6686 -4.7446 41 1 1.7501 -3.3686 -5.5006 42 1 2.5185 -0.6072 -3.5527 43 1 3.1231 -1.7820 -4.7454 44 1 2.8076 0.6139 -5.9378 45 1 0.7951 0.1989 -7.8757 46 1 0.1918 1.3741 -6.6828 47 1 1.6201 4.2489 -10.1186 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767907114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:39 Heat of formation + Delta-G solvation = -57.716152 kcal Electronic energy + Delta-G solvation = -23076.412840 eV Core-core repulsion = 19872.075965 eV Total energy + Delta-G solvation = -3204.336875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.86183 -38.22631 -36.61126 -34.22142 -32.43017 -32.09224 -31.88262 -28.37857 -27.52476 -27.17406 -26.01344 -23.30123 -21.98500 -21.27851 -20.03031 -19.85974 -19.67102 -17.14386 -16.64842 -15.86609 -15.77903 -15.30061 -14.76609 -14.62412 -14.22331 -14.04772 -13.90014 -13.73562 -13.22869 -12.90535 -12.67531 -12.48597 -12.38562 -12.26342 -12.12494 -11.96505 -11.73768 -11.46922 -11.45778 -11.15190 -10.99142 -10.98571 -10.78495 -10.73702 -10.52680 -10.40604 -10.22837 -9.95609 -9.47778 -9.09557 -8.75979 -8.20660 -8.07263 -6.20366 -4.22305 3.27243 3.32689 3.34464 3.43449 3.67468 4.26099 4.34965 4.44775 4.62777 4.81436 4.84621 4.90784 4.92566 5.15065 5.17335 5.29472 5.34302 5.37023 5.39703 5.42447 5.55301 5.59186 5.64762 5.67482 5.67978 5.73996 5.78749 5.84782 5.89767 5.99008 6.02484 6.07532 6.14156 6.20638 6.28660 6.39315 6.43400 6.82299 7.04618 7.08804 7.10616 7.29169 7.42767 8.17638 8.56141 8.77656 9.02115 9.40398 10.91637 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.004286 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.931863 B = 6531.384503 C = 7732.726945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.121 4.121 5 C -0.102 4.102 6 C 0.070 3.930 7 H 0.053 0.947 8 C -0.122 4.122 9 C -0.145 4.145 10 C 0.054 3.946 11 N -0.502 5.502 12 C 0.024 3.976 13 C 0.500 3.500 14 O -0.540 6.540 15 N -0.710 5.710 16 C 0.223 3.777 17 C -0.543 4.543 18 H 0.079 0.921 19 C 0.078 3.922 20 N -0.893 5.893 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.261 1.261 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.105 0.895 43 H 0.057 0.943 44 H 0.394 0.606 45 H 0.023 0.977 46 H 0.020 0.980 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.240 -13.506 18.464 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.158 4.158 5 C -0.140 4.140 6 C -0.038 4.038 7 H 0.071 0.929 8 C -0.161 4.161 9 C -0.184 4.184 10 C -0.074 4.074 11 N -0.227 5.227 12 C -0.108 4.108 13 C 0.284 3.716 14 O -0.417 6.417 15 N -0.360 5.360 16 C 0.101 3.899 17 C -0.580 4.580 18 H 0.097 0.903 19 C -0.126 4.126 20 N -0.531 5.531 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.185 1.185 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.122 0.878 43 H 0.075 0.925 44 H 0.228 0.772 45 H 0.041 0.959 46 H 0.038 0.962 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.927 -13.392 18.278 22.678 hybrid contribution 0.459 -0.090 -0.662 0.811 sum 1.386 -13.483 17.615 22.226 Atomic orbital electron populations 1.21882 0.95229 1.01846 1.01601 1.21089 0.96030 0.96011 0.98120 1.21859 1.00727 0.96226 1.01862 1.21811 1.00080 0.95499 0.98457 1.21579 1.02081 0.94839 0.95503 1.22644 0.96206 0.93707 0.91239 0.92912 1.22728 1.02170 0.94790 0.96367 1.22860 1.01158 0.98740 0.95605 1.22746 1.02185 0.88106 0.94365 1.63187 1.44963 1.09132 1.05379 1.22391 0.94860 0.96319 0.97192 1.20374 0.87875 0.80826 0.82524 1.90643 1.18865 1.63486 1.68700 1.46170 1.17928 1.34933 1.36960 1.19444 0.91609 0.92939 0.85948 1.21103 1.01668 1.16400 1.18878 0.90303 1.24794 0.98005 0.94311 0.95497 1.69884 1.37331 1.21142 1.24712 0.86817 0.84834 0.79939 0.78101 1.19835 1.20934 1.18528 0.92471 0.93307 0.92384 0.91795 0.93008 0.92903 0.92388 0.90636 0.92591 0.92129 0.90752 0.91089 0.90544 0.90872 0.91800 0.89928 0.92976 0.87752 0.92467 0.77244 0.95903 0.96249 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.95 37.16 0.33 -1.16 16 2 C -0.09 -0.90 2.92 -90.62 -0.26 -1.16 16 3 C -0.15 -1.43 9.19 37.16 0.34 -1.08 16 4 C -0.12 -1.24 3.59 -26.73 -0.10 -1.33 16 5 C -0.10 -1.00 4.69 -26.73 -0.13 -1.12 16 6 C 0.07 0.74 2.56 -66.19 -0.17 0.57 16 7 H 0.05 0.53 7.81 -51.93 -0.41 0.13 16 8 C -0.12 -1.12 6.51 -24.53 -0.16 -1.28 16 9 C -0.15 -1.45 6.94 -24.85 -0.17 -1.63 16 10 C 0.05 0.73 5.61 -2.84 -0.02 0.71 16 11 N -0.50 -6.87 4.37 -224.81 -0.98 -7.85 16 12 C 0.02 0.34 4.58 -4.98 -0.02 0.31 16 13 C 0.50 9.63 7.45 -10.99 -0.08 9.55 16 14 O -0.54 -12.41 15.50 5.56 0.09 -12.32 16 15 N -0.71 -14.52 5.55 -61.47 -0.34 -14.86 16 16 C 0.22 5.55 4.50 -5.19 -0.02 5.53 16 17 C -0.54 -14.99 9.83 -34.45 -0.34 -15.33 16 18 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 20 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 21 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 25 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.95 5.95 -51.93 -0.31 0.64 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.81 6.56 -51.93 -0.34 0.47 16 36 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.05 0.76 7.30 -51.93 -0.38 0.38 16 42 H 0.10 1.32 5.25 -51.93 -0.27 1.05 16 43 H 0.06 0.73 7.98 -51.93 -0.41 0.31 16 44 H 0.39 7.09 8.32 -40.82 -0.34 6.75 16 45 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 46 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 47 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -31.57 362.82 -9.20 -40.77 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -8.64 Total: 2.98 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -0.89 Total: -5.31 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.55 Total: -48.59 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.57 -9.20 -40.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767907114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.947 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds