Wall clock time and date at job start Tue Mar 31 2020 05:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47063 * 2 1 4 4 C 1.52998 * 109.47300 * 119.99682 * 2 1 3 5 5 C 1.53012 * 109.51806 * 59.87585 * 4 2 1 6 6 C 1.53119 * 109.52518 * 179.97438 * 4 2 1 7 7 C 1.53035 * 109.27871 * 177.62558 * 6 4 2 8 8 N 1.46853 * 109.52676 * 300.82326 * 7 6 4 9 9 C 1.46889 * 111.00065 * 185.83707 * 8 7 6 10 10 C 1.50706 * 109.47109 * 170.00240 * 9 8 7 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47148 * 179.72251 * 13 12 10 15 15 H 1.08002 * 120.00318 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99922 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99824 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99920 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47212 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46550 * 120.00565 * 18 16 14 21 21 H 1.48492 * 109.47285 * 240.00185 * 18 16 14 22 22 C 1.46846 * 111.19224 * 61.74291 * 8 7 6 23 23 C 1.53042 * 109.52374 * 298.25518 * 22 8 7 24 24 H 1.09000 * 109.47399 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46956 * 299.99902 * 1 2 3 26 26 H 1.09003 * 109.47250 * 59.99777 * 1 2 3 27 27 H 1.08998 * 109.47010 * 240.00188 * 2 1 3 28 28 H 1.09006 * 109.46940 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47232 * 300.00068 * 3 2 1 30 30 H 1.08998 * 109.47054 * 60.00215 * 3 2 1 31 31 H 1.09000 * 109.46615 * 180.12793 * 5 4 2 32 32 H 1.08999 * 109.46650 * 300.12487 * 5 4 2 33 33 H 1.08993 * 109.47153 * 60.12749 * 5 4 2 34 34 H 1.09001 * 109.49570 * 57.68756 * 6 4 2 35 35 H 1.09000 * 109.53845 * 297.58984 * 6 4 2 36 36 H 1.09003 * 109.46463 * 180.81046 * 7 6 4 37 37 H 1.08996 * 109.46506 * 60.84122 * 7 6 4 38 38 H 1.09004 * 109.47256 * 50.00607 * 9 8 7 39 39 H 1.08998 * 109.47820 * 290.00417 * 9 8 7 40 40 H 0.97005 * 120.00161 * 359.72088 * 12 10 9 41 41 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 42 42 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 43 43 H 0.97005 * 119.99648 * 179.97438 * 17 16 14 44 44 H 1.08995 * 109.46598 * 58.27286 * 22 8 7 45 45 H 1.09007 * 109.46189 * 178.24635 * 22 8 7 46 46 H 1.09001 * 109.50572 * 299.24197 * 23 22 8 47 47 H 1.09000 * 109.53585 * 179.13988 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5280 -2.1631 1.2520 6 6 3.5712 -0.7224 1.2501 7 6 4.0752 -1.3924 2.5304 8 7 3.5677 -0.6621 3.6991 9 6 4.1428 -1.1930 4.9421 10 6 3.7985 -0.2755 6.0869 11 8 3.1393 0.7227 5.8869 12 7 4.2239 -0.5636 7.3329 13 6 3.8887 0.3281 8.4459 14 6 4.4735 -0.2197 9.7222 15 1 5.0381 -1.1403 9.7060 16 6 4.2878 0.4542 10.9106 17 7 3.5999 1.5750 10.9304 18 14 5.0122 -0.2252 12.4927 19 1 5.7358 -1.4893 12.2030 20 1 5.9570 0.7646 13.0695 21 1 3.9200 -0.4908 13.4631 22 6 2.1002 -0.6879 3.7451 23 6 1.5373 0.0032 2.5010 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.8900 -2.6754 2.1434 32 1 0.4381 -2.1615 1.2512 33 1 1.8914 -2.6793 0.3635 34 1 3.9358 0.3040 1.2087 35 1 3.9358 -1.2735 0.3832 36 1 5.1651 -1.3821 2.5409 37 1 3.7216 -2.4228 2.5645 38 1 5.2263 -1.2585 4.8422 39 1 3.7353 -2.1851 5.1364 40 1 4.7483 -1.3637 7.4935 41 1 4.2998 1.3192 8.2539 42 1 2.8052 0.3968 8.5428 43 1 3.4690 2.0489 11.7666 44 1 1.7559 -1.7216 3.7734 45 1 1.7556 -0.1658 4.6378 46 1 1.8700 1.0410 2.4793 47 1 0.4481 -0.0293 2.5275 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778219305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:14 Heat of formation + Delta-G solvation = -54.513052 kcal Electronic energy + Delta-G solvation = -23139.586511 eV Core-core repulsion = 19935.388532 eV Total energy + Delta-G solvation = -3204.197978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29935 -38.65215 -36.08496 -34.09166 -32.34326 -31.98089 -30.83767 -29.08939 -27.89434 -26.75539 -25.48168 -23.43707 -23.13145 -22.15907 -20.56574 -19.59279 -17.93470 -17.05104 -16.09060 -15.63053 -15.30067 -15.26494 -14.80654 -14.64160 -14.47002 -14.23796 -13.90279 -13.71934 -13.49620 -12.83618 -12.60723 -12.47143 -12.18008 -12.03515 -11.92389 -11.89630 -11.72607 -11.55327 -11.42585 -11.26421 -11.00146 -10.93390 -10.85497 -10.75445 -10.32046 -10.30402 -10.04709 -9.98897 -9.36153 -8.90724 -8.71714 -8.06241 -7.80886 -6.15602 -4.22245 3.23854 3.30864 3.33906 3.44257 3.76218 4.28658 4.45211 4.55386 4.60024 4.67374 5.02574 5.09508 5.20502 5.22337 5.27437 5.33622 5.36065 5.40655 5.45478 5.53576 5.56620 5.61436 5.64314 5.70831 5.73269 5.77538 5.83397 5.85689 5.91731 5.98890 6.05073 6.09921 6.12448 6.24048 6.39363 6.42223 6.52463 7.12799 7.27743 7.36672 7.49436 7.54848 7.70308 7.99056 8.67618 8.81728 9.17417 9.44764 10.94646 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038340 B = 0.002987 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.124866 B = 9372.201222 C = 9635.386774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 C -0.152 4.152 4 C -0.058 4.058 5 C -0.146 4.146 6 C -0.106 4.106 7 C 0.054 3.946 8 N -0.517 5.517 9 C 0.036 3.964 10 C 0.498 3.502 11 O -0.538 6.538 12 N -0.716 5.716 13 C 0.251 3.749 14 C -0.542 4.542 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.050 3.950 23 C -0.104 4.104 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.389 0.611 41 H 0.026 0.974 42 H 0.025 0.975 43 H 0.265 0.735 44 H 0.025 0.975 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.253 -7.649 -21.687 23.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.101 4.101 3 C -0.209 4.209 4 C -0.058 4.058 5 C -0.203 4.203 6 C -0.143 4.143 7 C -0.073 4.073 8 N -0.241 5.241 9 C -0.096 4.096 10 C 0.282 3.718 11 O -0.416 6.416 12 N -0.365 5.365 13 C 0.131 3.869 14 C -0.580 4.580 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.078 4.078 23 C -0.141 4.141 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.115 0.885 39 H 0.072 0.928 40 H 0.221 0.779 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.115 0.885 46 H 0.095 0.905 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.656 -6.274 -21.725 22.768 hybrid contribution 0.437 -1.584 1.137 1.998 sum -2.219 -7.858 -20.588 22.148 Atomic orbital electron populations 1.21954 0.95540 1.01643 1.01715 1.21077 0.95556 0.96219 0.97245 1.21964 1.01313 0.95952 1.01696 1.20614 0.95106 0.95022 0.95051 1.22021 1.01037 0.95871 1.01412 1.21680 0.94680 1.01861 0.96105 1.22136 0.99560 0.95026 0.90618 1.61548 1.07721 1.54296 1.00569 1.21990 1.01211 0.96219 0.90154 1.20319 0.80810 0.86727 0.83905 1.90623 1.39282 1.27698 1.83975 1.46458 1.54190 1.27884 1.08002 1.19071 0.96502 0.89370 0.81995 1.21273 1.35265 1.09340 0.92166 0.91902 1.24958 0.95040 0.94776 0.99297 1.69989 1.39275 1.15769 1.27242 0.86370 0.78854 0.78945 0.82791 1.19656 1.20794 1.20818 1.22309 0.86575 0.98505 1.00389 1.21698 0.99429 1.00447 0.92567 0.92628 0.92205 0.93162 0.91721 0.92341 0.93280 0.91988 0.92556 0.92484 0.93064 0.90595 0.91938 0.91050 0.94982 0.88519 0.92753 0.77886 0.95571 0.95681 0.92525 0.95698 0.88505 0.90533 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.49 37.16 0.32 -0.94 16 2 C -0.08 -0.72 2.29 -90.62 -0.21 -0.93 16 3 C -0.15 -1.38 8.49 37.16 0.32 -1.06 16 4 C -0.06 -0.57 0.32 -154.38 -0.05 -0.62 16 5 C -0.15 -1.34 7.55 37.16 0.28 -1.06 16 6 C -0.11 -1.06 4.59 -26.65 -0.12 -1.18 16 7 C 0.05 0.61 5.21 -3.83 -0.02 0.59 16 8 N -0.52 -7.46 4.40 -236.11 -1.04 -8.49 16 9 C 0.04 0.52 5.45 -4.98 -0.03 0.50 16 10 C 0.50 10.00 7.50 -10.98 -0.08 9.92 16 11 O -0.54 -12.92 14.33 5.56 0.08 -12.84 16 12 N -0.72 -15.13 5.55 -61.47 -0.34 -15.47 16 13 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 14 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 15 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 18 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.05 0.72 4.86 -3.83 -0.02 0.70 16 23 C -0.10 -1.26 4.17 -26.65 -0.11 -1.38 16 24 H 0.05 0.44 6.43 -51.93 -0.33 0.10 16 25 H 0.06 0.53 6.50 -51.92 -0.34 0.19 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.53 6.38 -51.93 -0.33 0.20 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.63 6.38 -51.93 -0.33 0.30 16 31 H 0.06 0.56 4.92 -51.93 -0.26 0.30 16 32 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.84 6.32 -51.93 -0.33 0.51 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.74 8.02 -51.93 -0.42 0.32 16 37 H 0.03 0.34 6.51 -51.93 -0.34 0.00 16 38 H 0.10 1.23 7.99 -51.93 -0.41 0.81 16 39 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 40 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.02 0.34 6.51 -51.93 -0.34 0.00 16 45 H 0.10 1.75 5.78 -51.93 -0.30 1.45 16 46 H 0.08 1.04 6.31 -51.93 -0.33 0.72 16 47 H 0.06 0.74 6.58 -51.93 -0.34 0.40 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -31.29 347.91 -8.50 -39.79 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.98 Total: 3.59 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.17 Total: -2.22 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.64 Total: -49.45 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.29 -8.50 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778219305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.726 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds