Wall clock time and date at job start Tue Mar 31 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46960 * 2 1 4 4 C 1.52995 * 109.47154 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47154 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46960 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47077 * 55.00477 * 6 5 4 8 8 C 1.53004 * 109.46646 * 174.99997 * 6 5 4 9 9 N 1.46492 * 109.47088 * 294.99623 * 6 5 4 10 10 C 1.34783 * 119.99790 * 155.00287 * 9 6 5 11 11 O 1.21582 * 119.99933 * 5.03534 * 10 9 6 12 12 N 1.34782 * 119.99640 * 185.04188 * 10 9 6 13 13 C 1.46501 * 119.99485 * 185.06682 * 12 10 9 14 14 C 1.52998 * 109.46870 * 184.22276 * 13 12 10 15 15 C 1.50708 * 115.54957 * 294.91555 * 14 13 12 16 16 H 1.07998 * 119.99476 * 114.88940 * 15 14 13 17 17 C 1.37871 * 119.99968 * 294.61525 * 15 14 13 18 18 N 1.31517 * 119.99723 * 174.41346 * 17 15 14 19 19 Si 1.86801 * 120.00244 * 354.40978 * 17 15 14 20 20 H 1.48501 * 109.46738 * 93.90115 * 19 17 15 21 21 H 1.48502 * 109.47231 * 213.90059 * 19 17 15 22 22 H 1.48494 * 109.47145 * 333.90178 * 19 17 15 23 23 C 1.52994 * 117.50018 * 80.58888 * 14 13 12 24 24 C 1.52999 * 117.49939 * 149.25303 * 14 13 12 25 25 H 1.08998 * 109.47329 * 60.00478 * 1 2 3 26 26 H 1.09004 * 109.46577 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47447 * 300.00008 * 1 2 3 28 28 H 1.09002 * 109.47077 * 240.00229 * 2 1 3 29 29 H 1.09003 * 109.46992 * 119.99864 * 2 1 3 30 30 H 1.08997 * 109.47047 * 59.99747 * 3 2 1 31 31 H 1.09004 * 109.47256 * 300.00302 * 3 2 1 32 32 H 1.09002 * 109.46851 * 60.00249 * 4 3 2 33 33 H 1.09004 * 109.47415 * 300.00363 * 4 3 2 34 34 H 1.08997 * 109.47047 * 59.99905 * 5 4 3 35 35 H 1.09003 * 109.47156 * 299.99921 * 5 4 3 36 36 H 1.09000 * 109.47513 * 60.00440 * 8 6 5 37 37 H 1.09003 * 109.46900 * 179.97438 * 8 6 5 38 38 H 1.09000 * 109.47126 * 299.99791 * 8 6 5 39 39 H 0.96999 * 120.00471 * 335.00754 * 9 6 5 40 40 H 0.96993 * 119.99916 * 5.06856 * 12 10 9 41 41 H 1.08999 * 109.46904 * 64.22587 * 13 12 10 42 42 H 1.08999 * 109.47444 * 304.22331 * 13 12 10 43 43 H 0.97000 * 119.99957 * 180.02562 * 18 17 15 44 44 H 1.08999 * 117.50036 * 215.00202 * 23 14 13 45 45 H 1.09000 * 117.49794 * 0.02562 * 23 14 13 46 46 H 1.08998 * 117.49932 * 359.97128 * 24 14 13 47 47 H 1.09000 * 117.50220 * 144.97204 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 1 5.9732 2.2953 -0.8416 8 6 6.1198 4.3221 -0.1264 9 7 6.0982 2.3020 1.2520 10 6 7.3203 1.7355 1.3001 11 8 8.0536 1.7890 0.3318 12 7 7.7293 1.1097 2.4215 13 6 9.0964 0.5912 2.5139 14 6 9.2688 -0.1595 3.8358 15 6 9.1574 0.6824 5.0808 16 1 8.3455 0.5172 5.7734 17 6 10.0952 1.6597 5.3382 18 7 9.9390 2.4668 6.3648 19 14 11.5878 1.8374 4.2292 20 1 11.3067 2.8493 3.1793 21 1 12.7555 2.2731 5.0366 22 1 11.8878 0.5311 3.5899 23 6 8.7474 -1.5962 3.9055 24 6 10.2541 -1.3297 3.8603 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 3.9336 0.9286 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 3.7162 3.3994 0.8895 35 1 3.7169 3.3984 -0.8905 36 1 5.7565 4.9119 0.7152 37 1 7.2098 4.3222 -0.1259 38 1 5.7565 4.7560 -1.0580 39 1 5.5421 2.3236 2.0465 40 1 7.1185 1.0026 3.1673 41 1 9.8029 1.4202 2.4720 42 1 9.2841 -0.0886 1.6828 43 1 10.5985 3.1547 6.5457 44 1 8.3238 -1.9325 4.8518 45 1 8.2819 -2.0067 3.0095 46 1 10.7791 -1.5651 2.9345 47 1 10.8220 -1.4905 4.7766 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797407187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:24 Heat of formation + Delta-G solvation = -42.384520 kcal Electronic energy + Delta-G solvation = -22620.313821 eV Core-core repulsion = 19416.641775 eV Total energy + Delta-G solvation = -3203.672046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.64747 -37.48189 -36.72103 -35.12006 -33.33712 -32.17215 -31.83687 -30.05014 -26.65252 -26.48375 -24.99710 -22.66338 -21.65608 -21.14422 -20.92361 -20.23813 -19.27543 -17.77561 -16.58608 -16.15190 -15.61066 -15.20183 -14.66969 -14.40923 -14.33189 -14.00810 -13.83747 -13.67744 -13.27295 -12.93194 -12.86844 -12.65743 -12.25943 -12.18075 -12.07573 -11.93437 -11.77630 -11.25726 -11.09423 -11.05109 -10.91520 -10.69278 -10.66625 -10.58018 -10.47401 -10.23560 -9.74530 -9.47053 -9.13100 -8.84944 -8.73932 -8.49980 -8.09291 -6.16788 -4.19440 3.19622 3.31853 3.40620 3.46899 3.75799 4.40521 4.42810 4.66032 4.71310 4.80307 4.97162 5.00534 5.07965 5.10154 5.21260 5.32634 5.46270 5.49763 5.50560 5.61323 5.71195 5.71899 5.74918 5.80567 5.83624 5.88747 6.00431 6.01314 6.07629 6.15683 6.18772 6.23320 6.30075 6.36926 6.46730 6.53898 6.73268 6.88021 6.98209 7.09559 7.25874 7.51507 7.68927 8.41923 8.62997 8.84445 9.16888 9.47203 10.94181 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017933 B = 0.003830 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.978943 B = 7309.398947 C = 7985.969227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.121 4.121 5 C -0.126 4.126 6 C 0.162 3.838 7 H 0.083 0.917 8 C -0.165 4.165 9 N -0.746 5.746 10 C 0.700 3.300 11 O -0.606 6.606 12 N -0.720 5.720 13 C 0.174 3.826 14 C -0.017 4.017 15 C -0.489 4.489 16 H 0.077 0.923 17 C 0.083 3.917 18 N -0.894 5.894 19 Si 0.867 3.133 20 H -0.278 1.278 21 H -0.292 1.292 22 H -0.248 1.248 23 C -0.180 4.180 24 C -0.185 4.185 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.394 0.606 40 H 0.402 0.598 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.265 0.735 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.077 -1.340 -11.908 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.158 4.158 5 C -0.164 4.164 6 C 0.057 3.943 7 H 0.101 0.899 8 C -0.223 4.223 9 N -0.402 5.402 10 C 0.400 3.600 11 O -0.486 6.486 12 N -0.373 5.373 13 C 0.050 3.950 14 C -0.019 4.019 15 C -0.526 4.526 16 H 0.095 0.905 17 C -0.120 4.120 18 N -0.530 5.530 19 Si 0.694 3.306 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.172 1.172 23 C -0.217 4.217 24 C -0.223 4.223 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.228 0.772 40 H 0.236 0.764 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.296 -1.147 -12.684 19.147 hybrid contribution 0.379 0.264 0.312 0.558 sum -13.917 -0.883 -12.372 18.642 Atomic orbital electron populations 1.21780 0.96096 1.01476 1.01653 1.21546 0.95634 0.97124 1.02134 1.21624 0.95559 0.96635 1.01855 1.21613 0.94940 0.96594 1.02672 1.21914 0.94260 0.97405 1.02813 1.20718 0.92551 0.94073 0.86973 0.89855 1.22210 1.02613 0.96237 1.01279 1.45193 1.17843 1.63662 1.13520 1.16036 0.81624 0.78584 0.83745 1.90852 1.55011 1.66459 1.36281 1.44993 1.15536 1.60374 1.16405 1.20895 0.81265 0.96646 0.96220 1.19621 1.00571 0.87301 0.94382 1.20226 1.12473 1.16067 1.03821 0.90497 1.24908 0.97753 0.94588 0.94775 1.69895 1.35724 1.18668 1.28743 0.87019 0.82738 0.79949 0.80871 1.20417 1.21904 1.17176 1.22788 0.96700 1.01296 1.00930 1.23028 0.91809 1.06312 1.01160 0.92922 0.92916 0.92791 0.92148 0.91928 0.92056 0.92225 0.91996 0.91546 0.91413 0.90670 0.92673 0.91765 0.92231 0.77214 0.76394 0.92963 0.93514 0.92509 0.89700 0.90920 0.91096 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -1.00 5.93 -26.73 -0.16 -1.16 16 3 C -0.12 -0.93 5.21 -26.73 -0.14 -1.07 16 4 C -0.12 -1.09 5.10 -26.73 -0.14 -1.23 16 5 C -0.13 -1.13 4.75 -26.73 -0.13 -1.25 16 6 C 0.16 2.00 2.54 -67.93 -0.17 1.83 16 7 H 0.08 1.17 7.65 -51.93 -0.40 0.77 16 8 C -0.16 -2.03 9.48 37.16 0.35 -1.68 16 9 N -0.75 -10.64 4.54 -58.68 -0.27 -10.90 16 10 C 0.70 13.32 8.51 -86.91 -0.74 12.58 16 11 O -0.61 -13.67 16.00 5.29 0.08 -13.59 16 12 N -0.72 -14.04 5.48 -65.22 -0.36 -14.40 16 13 C 0.17 3.81 5.15 -4.04 -0.02 3.79 16 14 C -0.02 -0.39 0.84 -155.66 -0.13 -0.52 16 15 C -0.49 -12.83 9.15 -34.44 -0.32 -13.15 16 16 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 17 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 18 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 19 Si 0.87 21.47 24.96 -169.99 -4.24 17.23 16 20 H -0.28 -7.07 7.04 56.52 0.40 -6.67 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 22 H -0.25 -5.78 5.72 56.52 0.32 -5.46 16 23 C -0.18 -3.47 9.96 -26.69 -0.27 -3.74 16 24 C -0.18 -3.80 8.03 -26.69 -0.21 -4.01 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.66 7.75 -51.93 -0.40 0.26 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.39 4.78 8.63 -40.82 -0.35 4.43 16 40 H 0.40 7.27 8.36 -40.82 -0.34 6.93 16 41 H 0.05 1.27 5.06 -51.93 -0.26 1.01 16 42 H 0.05 1.00 8.06 -51.93 -0.42 0.58 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 47 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -30.85 375.13 -9.15 -40.00 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -9.00 Total: 9.71 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.80 Total: -8.10 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.15 Total: -50.90 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.08 Total: -13.59 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.24 Total: 17.23 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.85 -9.15 -40.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797407187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.383 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds