Wall clock time and date at job start Tue Mar 31 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46940 * 2 1 4 4 C 1.53002 * 109.46940 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47436 * 179.97438 * 4 3 2 6 6 C 1.52992 * 109.47431 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47076 * 304.99877 * 6 5 4 8 8 C 1.52997 * 109.47278 * 185.00398 * 6 5 4 9 9 N 1.46494 * 109.47469 * 64.99942 * 6 5 4 10 10 C 1.34778 * 120.00434 * 204.99641 * 9 6 5 11 11 O 1.21588 * 119.99613 * 0.02562 * 10 9 6 12 12 N 1.34779 * 120.00077 * 179.97438 * 10 9 6 13 13 C 1.46493 * 119.99888 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47036 * 184.79176 * 13 12 10 15 15 C 1.50692 * 115.55016 * 294.81752 * 14 13 12 16 16 H 1.08002 * 120.00113 * 99.48121 * 15 14 13 17 17 C 1.37879 * 119.99926 * 279.20564 * 15 14 13 18 18 N 1.31509 * 120.00406 * 355.32457 * 17 15 14 19 19 Si 1.86810 * 119.99823 * 175.32663 * 17 15 14 20 20 H 1.48500 * 109.46903 * 89.99877 * 19 17 15 21 21 H 1.48493 * 109.46965 * 209.99884 * 19 17 15 22 22 H 1.48497 * 109.46890 * 330.00046 * 19 17 15 23 23 C 1.52997 * 117.51909 * 80.52228 * 14 13 12 24 24 C 1.52994 * 60.00384 * 107.47928 * 23 14 13 25 25 H 1.09000 * 109.47106 * 300.00215 * 1 2 3 26 26 H 1.09007 * 109.46968 * 60.00167 * 1 2 3 27 27 H 1.09003 * 109.46846 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47140 * 240.00300 * 2 1 3 29 29 H 1.08997 * 109.47339 * 120.00278 * 2 1 3 30 30 H 1.08991 * 109.47194 * 59.99992 * 3 2 1 31 31 H 1.09007 * 109.47154 * 299.99720 * 3 2 1 32 32 H 1.09000 * 109.47106 * 59.99784 * 4 3 2 33 33 H 1.08997 * 109.47339 * 300.00278 * 4 3 2 34 34 H 1.09000 * 109.47031 * 59.99883 * 5 4 3 35 35 H 1.08997 * 109.47202 * 300.00506 * 5 4 3 36 36 H 1.09004 * 109.47043 * 300.00105 * 8 6 5 37 37 H 1.09004 * 109.47555 * 59.99846 * 8 6 5 38 38 H 1.08997 * 109.47630 * 179.97438 * 8 6 5 39 39 H 0.97000 * 119.99859 * 25.00329 * 9 6 5 40 40 H 0.97003 * 119.99757 * 359.97438 * 12 10 9 41 41 H 1.08999 * 109.47688 * 64.79293 * 13 12 10 42 42 H 1.09004 * 109.47203 * 304.79117 * 13 12 10 43 43 H 0.96998 * 120.00343 * 185.00416 * 18 17 15 44 44 H 1.08997 * 117.49957 * 214.97404 * 23 14 13 45 45 H 1.09008 * 117.49760 * 359.97438 * 23 14 13 46 46 H 1.09005 * 117.49918 * 252.51013 * 24 23 14 47 47 H 1.08997 * 117.52061 * 107.47923 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8850 -0.0013 6 6 5.6100 2.8850 -0.0026 7 1 5.9740 2.2956 0.8391 8 6 6.1201 4.3219 0.1226 9 7 6.0973 2.3011 -1.2546 10 6 7.3193 1.7346 -1.3034 11 8 8.0170 1.7077 -0.3080 12 7 7.7674 1.1969 -2.4552 13 6 9.0954 0.5807 -2.5080 14 6 9.4052 0.1593 -3.9458 15 6 8.5246 -0.9261 -4.5091 16 1 7.6998 -0.6701 -5.1576 17 6 8.7754 -2.2465 -4.2011 18 7 9.8356 -2.5664 -3.4919 19 14 7.6089 -3.5810 -4.7912 20 1 8.0469 -4.0672 -6.1242 21 1 7.6180 -4.7089 -3.8254 22 1 6.2347 -3.0276 -4.8931 23 6 9.8966 1.2414 -4.9094 24 6 10.8696 0.1818 -4.3886 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6766 1.9564 -0.8901 32 1 3.9329 0.9288 -0.8908 33 1 3.9337 0.9285 0.8890 34 1 3.7171 3.3991 0.8887 35 1 3.7163 3.3986 -0.8912 36 1 5.7561 4.9113 -0.7190 37 1 5.7576 4.7564 1.0542 38 1 7.2101 4.3220 0.1221 39 1 5.5406 2.3222 -2.0486 40 1 7.2102 1.2174 -3.2490 41 1 9.1153 -0.2957 -1.8603 42 1 9.8428 1.2989 -2.1708 43 1 10.0519 -3.4991 -3.3366 44 1 9.5828 1.1683 -5.9506 45 1 9.9988 2.2541 -4.5191 46 1 11.6123 0.4972 -3.6557 47 1 11.1961 -0.5887 -5.0870 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797407188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:26 Heat of formation + Delta-G solvation = -63.212217 kcal Electronic energy + Delta-G solvation = -22536.176200 eV Core-core repulsion = 19331.600998 eV Total energy + Delta-G solvation = -3204.575203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.02524 -38.74415 -37.83376 -36.01542 -34.91919 -33.97433 -32.78509 -31.00509 -28.00470 -27.28922 -26.87021 -23.50934 -22.94438 -22.01227 -21.80204 -21.50364 -21.19236 -19.25224 -18.04014 -17.32253 -16.69637 -16.51533 -16.28607 -15.73588 -15.52239 -15.26293 -14.85588 -14.72690 -14.47438 -14.37066 -13.92007 -13.70953 -13.45231 -13.31292 -12.93409 -12.90272 -12.81606 -12.80644 -12.50265 -12.36595 -12.04208 -12.01174 -11.77787 -11.68948 -11.43486 -11.34554 -11.27933 -11.15927 -10.93121 -10.44657 -10.20527 -10.02112 -9.54677 -8.08428 -6.22066 1.41830 1.44745 1.52444 1.90722 2.30795 2.42758 3.19879 3.37941 3.63720 3.70636 4.03626 4.05857 4.23784 4.26129 4.33630 4.35100 4.50755 4.56850 4.67203 4.68343 4.75783 4.79064 4.81183 4.87796 4.95114 4.97731 5.00847 5.04964 5.09622 5.10902 5.21704 5.27827 5.29119 5.35320 5.41203 5.47464 5.55728 5.56794 5.63180 5.71893 5.78097 5.80909 6.22523 6.38296 6.85238 7.30363 7.47494 7.75387 8.99054 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.004484 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.479688 B = 6242.257204 C = 8051.847593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.111 4.111 4 C -0.122 4.122 5 C -0.111 4.111 6 C 0.156 3.844 7 H 0.056 0.944 8 C -0.157 4.157 9 N -0.727 5.727 10 C 0.695 3.305 11 O -0.648 6.648 12 N -0.718 5.718 13 C 0.201 3.799 14 C 0.006 3.994 15 C -0.502 4.502 16 H 0.064 0.936 17 C 0.025 3.975 18 N -0.908 5.908 19 Si 0.948 3.052 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.263 1.263 23 C -0.175 4.175 24 C -0.159 4.159 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.029 0.971 39 H 0.407 0.593 40 H 0.406 0.594 41 H 0.021 0.979 42 H 0.031 0.969 43 H 0.258 0.742 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.774 11.476 4.351 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C -0.148 4.148 4 C -0.160 4.160 5 C -0.149 4.149 6 C 0.051 3.949 7 H 0.074 0.926 8 C -0.215 4.215 9 N -0.384 5.384 10 C 0.395 3.605 11 O -0.531 6.531 12 N -0.371 5.371 13 C 0.076 3.924 14 C 0.006 3.994 15 C -0.540 4.540 16 H 0.082 0.918 17 C -0.176 4.176 18 N -0.546 5.546 19 Si 0.774 3.226 20 H -0.202 1.202 21 H -0.220 1.220 22 H -0.187 1.187 23 C -0.212 4.212 24 C -0.197 4.197 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.048 0.952 39 H 0.243 0.757 40 H 0.241 0.759 41 H 0.040 0.960 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.086 0.914 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.090 11.295 5.385 20.383 hybrid contribution -0.219 -1.360 -0.823 1.604 sum -16.309 9.936 4.562 19.635 Atomic orbital electron populations 1.21760 0.95033 1.01727 1.02208 1.21580 0.96591 0.97455 1.01348 1.21559 0.94139 0.96385 1.02745 1.21603 0.96165 0.96883 1.01343 1.21831 0.91264 0.97155 1.04652 1.20919 0.94882 0.93835 0.85281 0.92589 1.22139 1.00221 0.95824 1.03318 1.45090 1.15728 1.62681 1.14866 1.16250 0.82525 0.78464 0.83297 1.90829 1.59044 1.66993 1.36207 1.44933 1.19516 1.61184 1.11451 1.20338 0.81717 0.93336 0.96999 1.19051 0.94463 0.95866 0.90060 1.20660 1.13692 0.90306 1.29358 0.91759 1.25695 0.96391 1.00768 0.94723 1.70108 1.26941 1.17851 1.39662 0.85708 0.80173 0.78994 0.77706 1.20179 1.21987 1.18747 1.22958 1.05291 0.93587 0.99396 1.22425 0.93697 1.00617 1.02965 0.92128 0.92323 0.92948 0.93106 0.92837 0.91061 0.91149 0.93160 0.93471 0.88563 0.89538 0.91034 0.89874 0.95207 0.75682 0.75877 0.96020 0.95051 0.93272 0.89504 0.89523 0.91357 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.37 16 2 C -0.13 -2.23 5.93 30.59 0.18 -2.05 16 3 C -0.11 -1.65 5.21 30.59 0.16 -1.49 16 4 C -0.12 -2.27 5.10 30.59 0.16 -2.11 16 5 C -0.11 -1.73 4.75 30.59 0.15 -1.58 16 6 C 0.16 3.65 2.57 44.99 0.12 3.77 16 7 H 0.06 1.67 7.58 -2.38 -0.02 1.65 16 8 C -0.16 -3.31 9.48 71.98 0.68 -2.62 16 9 N -0.73 -19.87 4.53 -457.83 -2.08 -21.95 16 10 C 0.69 26.91 8.53 179.05 1.53 28.44 16 11 O -0.65 -30.93 16.00 -3.99 -0.06 -30.99 16 12 N -0.72 -28.37 5.48 -478.54 -2.62 -31.00 16 13 C 0.20 9.53 5.50 86.38 0.48 10.00 16 14 C 0.01 0.30 1.40 -52.93 -0.07 0.23 16 15 C -0.50 -25.67 8.57 25.60 0.22 -25.45 16 16 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 17 C 0.02 1.33 5.44 84.66 0.46 1.79 16 18 N -0.91 -51.86 12.85 21.45 0.28 -51.59 16 19 Si 0.95 42.35 29.54 68.60 2.03 44.38 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 C -0.18 -7.03 9.95 30.59 0.30 -6.73 16 24 C -0.16 -7.34 9.39 30.59 0.29 -7.05 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.05 1.10 7.75 -2.39 -0.02 1.08 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.41 8.72 8.62 -92.71 -0.80 7.92 16 40 H 0.41 14.21 8.34 -92.71 -0.77 13.43 16 41 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.03 1.49 8.09 -2.39 -0.02 1.47 16 43 H 0.26 14.25 8.32 -92.71 -0.77 13.48 16 44 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 45 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 46 H 0.07 3.05 8.14 -2.38 -0.02 3.03 16 47 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -65.70 384.57 2.24 -63.45 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -0.65 Total: 33.93 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 5.36 Total: -6.24 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -4.42 Total: -104.53 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.06 Total: -30.99 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -65.70 2.24 -63.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797407188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.240 kcal (2) G-P(sol) polarization free energy of solvation -65.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds