Wall clock time and date at job start Tue Mar 31 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46919 * 2 1 4 4 C 1.52992 * 109.47564 * 300.00316 * 3 2 1 5 5 C 1.53005 * 109.46999 * 60.00308 * 3 2 1 6 6 C 1.50695 * 109.46971 * 179.97438 * 3 2 1 7 7 O 1.21280 * 120.00136 * 354.77919 * 6 3 2 8 8 N 1.34776 * 120.00048 * 174.77630 * 6 3 2 9 9 C 1.47022 * 125.64959 * 355.00264 * 8 6 3 10 10 C 1.54321 * 107.27309 * 181.02333 * 9 8 6 11 11 H 1.09004 * 110.71680 * 263.65232 * 10 9 8 12 12 N 1.46496 * 110.72223 * 140.55751 * 10 9 8 13 13 C 1.36934 * 120.00356 * 86.45025 * 12 10 9 14 14 H 1.08002 * 119.99822 * 0.02562 * 13 12 10 15 15 C 1.38811 * 120.00236 * 180.02562 * 13 12 10 16 16 N 1.31611 * 119.99991 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00188 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.46949 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47400 * 120.00094 * 17 15 13 20 20 H 1.48505 * 109.47075 * 240.00544 * 17 15 13 21 21 C 1.55157 * 102.94576 * 22.19213 * 10 9 8 22 22 C 1.53000 * 111.00338 * 82.57259 * 21 10 9 23 23 C 1.52996 * 111.00789 * 206.38933 * 21 10 9 24 24 C 1.47430 * 125.64875 * 174.69210 * 8 6 3 25 25 H 1.08997 * 109.47193 * 59.99830 * 1 2 3 26 26 H 1.09004 * 109.47152 * 299.99715 * 1 2 3 27 27 H 1.08998 * 109.47089 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47193 * 120.00170 * 2 1 3 29 29 H 1.08995 * 109.46924 * 240.00263 * 2 1 3 30 30 H 1.09000 * 109.47156 * 41.84968 * 4 3 2 31 31 H 1.08996 * 109.47733 * 161.86089 * 4 3 2 32 32 H 1.09002 * 109.47003 * 281.85818 * 4 3 2 33 33 H 1.09001 * 109.46938 * 67.09810 * 5 3 2 34 34 H 1.08998 * 109.46954 * 187.09758 * 5 3 2 35 35 H 1.09006 * 109.46925 * 307.09866 * 5 3 2 36 36 H 1.08999 * 109.88149 * 300.43742 * 9 8 6 37 37 H 1.08998 * 109.87899 * 61.44639 * 9 8 6 38 38 H 0.96997 * 119.99886 * 266.45328 * 12 10 9 39 39 H 0.97005 * 120.00068 * 180.02562 * 16 15 13 40 40 H 1.08989 * 109.46912 * 60.00079 * 22 21 10 41 41 H 1.09006 * 109.46775 * 180.02562 * 22 21 10 42 42 H 1.09000 * 109.47148 * 300.00209 * 22 21 10 43 43 H 1.09000 * 109.47132 * 59.99631 * 23 21 10 44 44 H 1.08999 * 109.47303 * 179.97438 * 23 21 10 45 45 H 1.09005 * 109.47111 * 300.00045 * 23 21 10 46 46 H 1.08996 * 110.36831 * 274.74944 * 24 8 6 47 47 H 1.09001 * 110.36456 * 37.07574 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 -1.2491 5 6 1.5300 2.1637 1.2493 6 6 3.5469 1.4425 0.0006 7 8 4.1533 0.3966 0.0966 8 7 4.2208 2.6049 -0.1055 9 6 3.6187 3.9270 -0.3314 10 6 4.7725 4.9489 -0.4082 11 1 4.9258 5.4307 0.5574 12 7 4.5120 5.9475 -1.4480 13 6 3.7749 7.0639 -1.1560 14 1 3.3858 7.2084 -0.1589 15 6 3.5277 8.0098 -2.1414 16 7 4.0014 7.8334 -3.3565 17 14 2.5227 9.5331 -1.7428 18 1 2.1088 9.4940 -0.3170 19 1 3.3439 10.7459 -1.9872 20 1 1.3157 9.5700 -2.6071 21 6 5.9924 4.0680 -0.7864 22 6 6.0397 3.8149 -2.2946 23 6 7.2975 4.6997 -0.2981 24 6 5.6835 2.7620 -0.0080 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 0.4882 1.8951 -1.4239 31 1 1.6080 3.2412 -1.1039 32 1 2.1305 1.8688 -2.1096 33 1 1.9934 1.7284 2.1347 34 1 1.7859 3.2215 1.1881 35 1 0.4473 2.0550 1.3151 36 1 3.0618 3.9255 -1.2684 37 1 2.9532 4.1771 0.4948 38 1 4.8618 5.8178 -2.3434 39 1 3.8290 8.4946 -4.0451 40 1 6.1194 4.7664 -2.8202 41 1 6.9041 3.1947 -2.5320 42 1 5.1291 3.3030 -2.6058 43 1 7.2662 4.8063 0.7862 44 1 8.1364 4.0616 -0.5760 45 1 7.4198 5.6812 -0.7563 46 1 5.9860 2.8585 1.0347 47 1 6.1879 1.9152 -0.4735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996205846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:50 Heat of formation + Delta-G solvation = -30.718346 kcal Electronic energy + Delta-G solvation = -24283.364023 eV Core-core repulsion = 21080.197861 eV Total energy + Delta-G solvation = -3203.166163 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.46129 -38.33036 -36.15799 -34.14074 -33.15406 -30.85704 -30.15872 -27.63457 -27.37696 -26.97766 -26.15705 -24.83563 -23.85599 -21.76918 -20.26607 -18.80203 -18.25038 -17.25893 -16.29808 -15.92500 -15.43392 -14.95027 -14.55812 -14.32002 -14.10181 -13.85733 -13.70342 -13.18522 -12.91600 -12.72007 -12.62136 -12.35508 -12.28161 -12.08514 -12.01541 -11.62115 -11.51846 -11.35226 -11.21871 -11.07951 -10.98746 -10.94292 -10.60019 -10.55676 -10.54216 -10.32135 -10.20411 -9.86250 -9.68081 -9.37988 -8.99073 -8.21763 -7.09837 -5.87619 -3.17660 2.90993 3.30032 3.36840 3.43296 3.45067 4.48518 4.57736 4.73153 4.88577 4.92986 5.09604 5.19617 5.24444 5.30609 5.44021 5.48928 5.55160 5.57329 5.65402 5.73379 5.78051 5.80469 5.86433 5.89403 5.93776 5.97785 6.01146 6.05692 6.10721 6.12761 6.14866 6.28168 6.32590 6.35582 6.38856 6.44011 6.54918 6.63971 6.67014 6.76608 6.90923 7.61667 7.89100 8.30670 8.45341 9.43049 9.97757 10.32854 11.34575 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.005637 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.255802 B = 4965.859345 C = 6145.753563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.097 4.097 3 C -0.076 4.076 4 C -0.157 4.157 5 C -0.147 4.147 6 C 0.536 3.464 7 O -0.557 6.557 8 N -0.607 5.607 9 C 0.064 3.936 10 C 0.179 3.821 11 H 0.064 0.936 12 N -0.712 5.712 13 C -0.246 4.246 14 H 0.072 0.928 15 C -0.008 4.008 16 N -0.929 5.929 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.085 4.085 22 C -0.131 4.131 23 C -0.129 4.129 24 C 0.116 3.884 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.390 0.610 39 H 0.256 0.744 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.099 -11.081 6.524 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.135 4.135 3 C -0.079 4.079 4 C -0.214 4.214 5 C -0.205 4.205 6 C 0.325 3.675 7 O -0.436 6.436 8 N -0.340 5.340 9 C -0.061 4.061 10 C 0.066 3.934 11 H 0.082 0.918 12 N -0.354 5.354 13 C -0.377 4.377 14 H 0.090 0.910 15 C -0.204 4.204 16 N -0.577 5.577 17 Si 0.737 3.263 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.087 4.087 22 C -0.189 4.189 23 C -0.187 4.187 24 C -0.007 4.007 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.227 0.773 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.917 -11.520 6.626 13.427 hybrid contribution -0.519 0.885 -0.140 1.035 sum -2.435 -10.635 6.486 12.693 Atomic orbital electron populations 1.21966 0.95698 1.01515 1.02190 1.21310 0.95210 0.93996 1.03002 1.20693 0.91320 0.97874 0.97982 1.22244 1.01586 1.01773 0.95811 1.22028 1.01704 1.00980 0.95743 1.20277 0.89491 0.82165 0.75613 1.90638 1.70467 1.31067 1.51409 1.48439 1.07711 1.07418 1.70435 1.23688 0.99219 0.81746 1.01467 1.21238 0.89764 0.88441 0.93922 0.91812 1.42545 1.62963 1.20362 1.09558 1.19288 1.25309 0.97240 0.95893 0.91028 1.24734 1.01044 0.98975 0.95666 1.69659 1.49728 1.36410 1.01905 0.86151 0.79578 0.83180 0.77440 1.20498 1.21827 1.21833 1.22002 0.96530 0.94198 0.95967 1.21634 1.00989 1.02089 0.94159 1.21646 0.95204 1.01187 1.00621 1.22334 0.80970 0.97857 0.99510 0.92158 0.92336 0.92781 0.91457 0.91598 0.91306 0.90257 0.92439 0.92592 0.91192 0.91178 0.89876 0.92019 0.77320 0.93408 0.90919 0.93363 0.92790 0.92876 0.93143 0.91359 0.91878 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.28 37.16 0.34 -1.17 16 2 C -0.10 -1.20 4.29 -26.73 -0.11 -1.31 16 3 C -0.08 -1.01 0.52 -155.66 -0.08 -1.09 16 4 C -0.16 -2.06 7.53 37.15 0.28 -1.78 16 5 C -0.15 -1.75 8.10 37.16 0.30 -1.45 16 6 C 0.54 8.84 6.49 -10.99 -0.07 8.77 16 7 O -0.56 -10.75 16.21 5.56 0.09 -10.66 16 8 N -0.61 -9.75 3.31 -170.38 -0.56 -10.31 16 9 C 0.06 1.07 4.51 -3.07 -0.01 1.06 16 10 C 0.18 3.26 2.84 -66.10 -0.19 3.07 16 11 H 0.06 1.18 8.02 -51.93 -0.42 0.77 16 12 N -0.71 -16.15 5.08 -51.65 -0.26 -16.41 16 13 C -0.25 -6.28 9.98 -15.06 -0.15 -6.43 16 14 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 15 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 16 N -0.93 -26.49 13.06 55.49 0.72 -25.76 16 17 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.09 -1.35 0.87 -152.24 -0.13 -1.48 16 22 C -0.13 -2.15 7.94 37.16 0.30 -1.85 16 23 C -0.13 -1.83 8.68 37.16 0.32 -1.51 16 24 C 0.12 1.78 5.87 -2.40 -0.01 1.77 16 25 H 0.06 0.57 6.09 -51.93 -0.32 0.25 16 26 H 0.06 0.53 6.28 -51.93 -0.33 0.20 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.77 5.69 -51.93 -0.30 0.48 16 31 H 0.08 1.12 5.07 -51.93 -0.26 0.86 16 32 H 0.06 0.81 8.00 -51.93 -0.42 0.39 16 33 H 0.05 0.67 8.13 -51.93 -0.42 0.24 16 34 H 0.07 0.87 5.20 -51.93 -0.27 0.60 16 35 H 0.07 0.71 6.08 -51.93 -0.32 0.39 16 36 H 0.08 1.50 5.59 -51.93 -0.29 1.21 16 37 H 0.06 0.98 5.66 -51.93 -0.29 0.69 16 38 H 0.39 9.42 5.26 -40.82 -0.21 9.20 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.07 1.32 6.34 -51.94 -0.33 1.00 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.93 7.91 -51.93 -0.41 0.52 16 43 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 0.91 7.99 -51.93 -0.41 0.49 16 47 H 0.07 1.13 7.91 -51.93 -0.41 0.72 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -28.89 349.13 -6.99 -35.89 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -7.90 Total: 9.50 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 0.68 Total: -3.73 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.10 Total: -52.48 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.89 -6.99 -35.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996205846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.169 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds