Wall clock time and date at job start Tue Mar 31 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47171 * 2 1 4 4 C 1.52992 * 109.47227 * 120.00112 * 2 1 3 5 5 C 1.53001 * 109.47364 * 307.09257 * 4 2 1 6 6 C 1.53001 * 109.47427 * 187.09099 * 4 2 1 7 7 C 1.50702 * 109.47222 * 67.09543 * 4 2 1 8 8 O 1.21285 * 119.99753 * 238.27057 * 7 4 2 9 9 N 1.34776 * 120.00296 * 58.26318 * 7 4 2 10 10 C 1.46923 * 120.62600 * 5.19010 * 9 7 4 11 11 C 1.52765 * 109.00797 * 233.58042 * 10 9 7 12 12 C 1.53042 * 109.38332 * 305.58883 * 11 10 9 13 13 N 1.46499 * 109.44815 * 181.25218 * 12 11 10 14 14 C 1.36938 * 119.99979 * 84.94205 * 13 12 11 15 15 H 1.07993 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99855 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00010 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99931 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47275 * 59.99648 * 18 16 14 20 20 H 1.48501 * 109.47056 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46842 * 299.99488 * 18 16 14 22 22 C 1.53042 * 109.53699 * 61.23987 * 12 11 10 23 23 C 1.46918 * 120.63303 * 185.46727 * 9 7 4 24 24 H 1.09004 * 109.46720 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46634 * 299.99788 * 1 2 3 26 26 H 1.09003 * 109.46815 * 60.00073 * 1 2 3 27 27 H 1.09004 * 109.47071 * 240.00229 * 2 1 3 28 28 H 1.08997 * 109.47421 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47250 * 300.00388 * 3 2 1 30 30 H 1.09004 * 109.46936 * 60.00146 * 3 2 1 31 31 H 1.08994 * 109.46781 * 295.63420 * 5 4 2 32 32 H 1.09006 * 109.46720 * 55.63088 * 5 4 2 33 33 H 1.09003 * 109.47367 * 175.62847 * 5 4 2 34 34 H 1.09001 * 109.47372 * 179.02941 * 6 4 2 35 35 H 1.08995 * 109.47165 * 299.03219 * 6 4 2 36 36 H 1.09005 * 109.46839 * 59.03157 * 6 4 2 37 37 H 1.08997 * 109.59392 * 353.41487 * 10 9 7 38 38 H 1.09003 * 109.59080 * 113.84596 * 10 9 7 39 39 H 1.09004 * 109.56462 * 185.55488 * 11 10 9 40 40 H 1.09002 * 109.38395 * 65.51439 * 11 10 9 41 41 H 1.08993 * 109.45964 * 301.21805 * 12 11 10 42 42 H 0.96997 * 119.99719 * 264.94142 * 13 12 11 43 43 H 0.97003 * 120.00078 * 179.97438 * 17 16 14 44 44 H 1.08999 * 109.49769 * 178.68637 * 22 12 11 45 45 H 1.09001 * 109.52587 * 58.59842 * 22 12 11 46 46 H 1.09003 * 109.58552 * 246.15650 * 23 9 7 47 47 H 1.08996 * 109.58801 * 6.43825 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.3899 -0.1102 2.4921 6 6 3.5596 -0.5689 1.3414 7 6 1.6861 -2.1837 1.1645 8 8 1.0090 -2.6948 2.0313 9 7 2.1219 -2.9235 0.1257 10 6 3.0351 -2.3488 -0.8715 11 6 2.4406 -2.5491 -2.2644 12 6 2.1313 -4.0329 -2.4761 13 7 1.5888 -4.2309 -3.8225 14 6 2.4370 -4.3894 -4.8859 15 1 3.5057 -4.3681 -4.7321 16 6 1.9230 -4.5764 -6.1617 17 7 0.6204 -4.6019 -6.3492 18 14 3.0799 -4.7934 -7.6122 19 1 3.9332 -5.9884 -7.3904 20 1 2.2872 -4.9742 -8.8548 21 1 3.9389 -3.5893 -7.7445 22 6 1.1042 -4.4946 -1.4397 23 6 1.6880 -4.3180 -0.0344 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.7082 0.9270 2.5959 32 1 0.3052 -0.1490 2.3909 33 1 1.6928 -0.6735 3.3748 34 1 3.9210 -1.0681 2.2405 35 1 4.0239 -1.0195 0.4642 36 1 3.8167 0.4895 1.3853 37 1 3.1621 -1.2834 -0.6798 38 1 4.0013 -2.8503 -0.8142 39 1 3.1545 -2.2153 -3.0175 40 1 1.5215 -1.9698 -2.3522 41 1 3.0465 -4.6142 -2.3643 42 1 0.6290 -4.2496 -3.9607 43 1 0.2612 -4.7322 -7.2408 44 1 0.8669 -5.5454 -1.6057 45 1 0.1973 -3.8974 -1.5345 46 1 2.5421 -4.9833 0.0927 47 1 0.9283 -4.5522 0.7113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996642897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:05 Heat of formation + Delta-G solvation = -24.282304 kcal Electronic energy + Delta-G solvation = -24277.162579 eV Core-core repulsion = 21074.275504 eV Total energy + Delta-G solvation = -3202.887075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.96223 -37.71637 -36.93666 -34.46900 -32.11300 -31.45441 -30.79752 -29.23073 -28.21657 -26.59434 -25.25968 -23.86413 -22.99110 -22.36451 -20.56071 -19.72605 -18.45475 -17.08498 -16.57647 -16.11385 -15.51997 -14.90713 -14.74347 -14.28490 -14.18723 -13.76147 -13.60015 -13.44944 -13.38779 -13.03405 -12.76944 -12.52308 -12.28111 -12.11123 -11.95384 -11.83845 -11.75363 -11.48224 -11.25725 -11.09244 -10.96673 -10.88049 -10.82643 -10.62485 -10.51443 -10.28026 -10.09064 -9.81593 -9.68070 -9.37388 -8.90646 -8.43139 -6.99427 -5.79228 -3.08509 2.76411 3.16834 3.41310 3.46018 3.47112 4.38537 4.52630 4.56239 4.68414 4.97944 5.05979 5.09879 5.17430 5.30748 5.35053 5.35428 5.46613 5.51846 5.52586 5.56282 5.59419 5.67552 5.71061 5.75397 5.80619 5.83466 5.89352 5.90442 5.95797 6.02101 6.05996 6.15922 6.24904 6.26246 6.35407 6.38711 6.43075 6.51221 6.64722 6.89544 7.03663 7.59773 7.65992 8.33017 8.39016 9.50169 10.07834 10.42576 11.43245 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.004365 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.862086 B = 6413.289321 C = 6787.159432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.149 4.149 4 C -0.076 4.076 5 C -0.129 4.129 6 C -0.162 4.162 7 C 0.526 3.474 8 O -0.551 6.551 9 N -0.602 5.602 10 C 0.084 3.916 11 C -0.153 4.153 12 C 0.180 3.820 13 N -0.724 5.724 14 C -0.241 4.241 15 H 0.069 0.931 16 C -0.012 4.012 17 N -0.933 5.933 18 Si 0.906 3.094 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.138 4.138 23 C 0.115 3.885 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.332 10.273 15.430 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 C -0.206 4.206 4 C -0.079 4.079 5 C -0.186 4.186 6 C -0.219 4.219 7 C 0.314 3.686 8 O -0.429 6.429 9 N -0.335 5.335 10 C -0.039 4.039 11 C -0.194 4.194 12 C 0.070 3.930 13 N -0.364 5.364 14 C -0.372 4.372 15 H 0.087 0.913 16 C -0.208 4.208 17 N -0.581 5.581 18 Si 0.737 3.263 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.177 4.177 23 C -0.007 4.007 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.217 0.783 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.102 9.943 15.739 19.063 hybrid contribution 0.300 -0.164 -1.097 1.149 sum 4.402 9.779 14.642 18.150 Atomic orbital electron populations 1.21919 0.94746 1.02176 1.01865 1.21532 0.96691 0.96680 0.97204 1.21944 1.01178 0.95456 1.02020 1.20774 0.97270 0.91926 0.97931 1.21747 1.01314 0.99730 0.95839 1.22350 0.93169 1.03126 1.03213 1.20509 0.78941 0.88264 0.80850 1.90644 1.39699 1.73425 1.39098 1.48081 1.47250 1.12936 1.25219 1.22422 0.92513 0.99845 0.89112 1.22641 1.01316 1.01520 0.93932 1.20145 0.94973 0.92223 0.85684 1.42427 1.06377 1.86495 1.01112 1.19181 0.89730 1.41719 0.86550 0.91256 1.24738 0.95747 1.02810 0.97519 1.69653 1.10055 1.56723 1.21629 0.86292 0.79738 0.77936 0.82349 1.21270 1.21709 1.21287 1.22198 0.99644 1.02201 0.93670 1.21596 0.99823 0.81395 0.97922 0.92692 0.92209 0.92346 0.88755 0.92159 0.92349 0.92448 0.92139 0.91618 0.92183 0.92239 0.90527 0.91007 0.87954 0.91688 0.90678 0.92065 0.93502 0.78278 0.93445 0.90652 0.91927 0.91783 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.48 37.16 0.32 -1.42 16 2 C -0.10 -1.10 1.92 -90.62 -0.17 -1.27 16 3 C -0.15 -1.27 8.43 37.16 0.31 -0.96 16 4 C -0.08 -0.85 0.31 -155.66 -0.05 -0.90 16 5 C -0.13 -1.38 7.11 37.16 0.26 -1.11 16 6 C -0.16 -1.49 7.61 37.16 0.28 -1.21 16 7 C 0.53 7.65 5.57 -10.98 -0.06 7.59 16 8 O -0.55 -9.75 15.36 5.55 0.09 -9.66 16 9 N -0.60 -8.48 2.97 -173.03 -0.51 -9.00 16 10 C 0.08 1.07 4.11 -3.93 -0.02 1.06 16 11 C -0.15 -2.49 5.31 -26.83 -0.14 -2.63 16 12 C 0.18 3.39 2.73 -67.89 -0.19 3.21 16 13 N -0.72 -17.57 5.12 -53.39 -0.27 -17.84 16 14 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 15 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 18 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 23 C 0.12 1.70 6.42 -3.71 -0.02 1.67 16 24 H 0.05 0.75 7.45 -51.93 -0.39 0.37 16 25 H 0.06 0.63 6.23 -51.93 -0.32 0.30 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 1.11 3.91 -51.93 -0.20 0.91 16 28 H 0.06 0.46 6.30 -51.93 -0.33 0.13 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.45 6.73 -51.93 -0.35 0.10 16 31 H 0.06 0.51 6.84 -51.93 -0.36 0.16 16 32 H 0.06 0.75 6.06 -51.93 -0.31 0.44 16 33 H 0.06 0.69 7.95 -51.93 -0.41 0.28 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.69 4.67 -51.93 -0.24 0.45 16 36 H 0.07 0.54 6.27 -51.93 -0.33 0.21 16 37 H 0.10 1.12 2.60 -51.93 -0.13 0.99 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.05 7.49 -51.93 -0.39 0.66 16 41 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.09 1.32 7.04 -51.93 -0.37 0.96 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -30.74 343.05 -7.50 -38.24 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.80 Total: 8.69 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 0.13 Total: -5.46 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.06 Total: -53.90 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.74 -7.50 -38.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996642897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.957 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds