Wall clock time and date at job start Tue Mar 31 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53011 * 109.46808 * 2 1 4 4 C 1.52995 * 109.46712 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46571 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47044 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47431 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99626 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00066 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46497 * 113.61305 * 219.93536 * 13 12 11 15 15 C 1.36944 * 119.99791 * 203.46713 * 14 13 12 16 16 H 1.07993 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99770 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00274 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99962 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46991 * 60.00036 * 19 17 15 21 21 H 1.48495 * 109.47111 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47014 * 300.00285 * 19 17 15 23 23 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 24 24 H 1.08997 * 109.47567 * 300.00371 * 1 2 3 25 25 H 1.09004 * 109.46637 * 60.00341 * 1 2 3 26 26 H 1.09002 * 109.46943 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47524 * 240.00165 * 2 1 3 28 28 H 1.08995 * 109.46812 * 119.99525 * 2 1 3 29 29 H 1.09000 * 109.46944 * 59.99810 * 3 2 1 30 30 H 1.08997 * 109.47103 * 299.99930 * 3 2 1 31 31 H 1.09000 * 109.47204 * 60.00419 * 4 3 2 32 32 H 1.08997 * 109.47646 * 300.00047 * 4 3 2 33 33 H 1.09005 * 109.47148 * 60.00752 * 5 4 3 34 34 H 1.08995 * 109.47298 * 299.99898 * 5 4 3 35 35 H 1.09005 * 109.47358 * 59.99831 * 6 5 4 36 36 H 1.09006 * 109.47182 * 300.00516 * 6 5 4 37 37 H 0.96996 * 120.00586 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 39 39 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 40 40 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 41 41 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 42 42 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 43 43 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 44 44 H 0.96995 * 120.00146 * 23.47603 * 14 13 12 45 45 H 0.96996 * 120.00281 * 179.97438 * 18 17 15 46 46 H 1.08992 * 113.61675 * 140.02412 * 23 13 12 47 47 H 1.09000 * 113.60973 * 270.92699 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0798 2.8852 0.0000 6 6 5.6099 2.8853 0.0000 7 6 6.1122 4.3061 0.0000 8 8 5.3240 5.2279 0.0005 9 7 7.4372 4.5524 0.0005 10 6 7.9255 5.9336 0.0011 11 6 9.4555 5.9337 0.0010 12 6 10.0715 7.3375 -0.1213 13 6 11.1179 6.8823 0.9096 14 7 11.4581 7.9121 1.8944 15 6 12.6600 7.8632 2.5489 16 1 13.3572 7.0657 2.3387 17 6 12.9826 8.8393 3.4816 18 7 12.1330 9.8115 3.7375 19 14 14.6224 8.7730 4.3739 20 1 15.7275 8.8432 3.3844 21 1 14.7227 9.9205 5.3110 22 1 14.7203 7.5021 5.1359 23 6 10.0729 5.8716 1.4110 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.9287 -0.8891 32 1 3.9330 0.9289 0.8908 33 1 3.7162 3.3995 0.8896 34 1 3.7169 3.3985 -0.8904 35 1 5.9733 2.3710 -0.8898 36 1 5.9733 2.3718 0.8902 37 1 8.0676 3.8152 0.0005 38 1 7.5619 6.4471 0.8911 39 1 7.5624 6.4478 -0.8888 40 1 9.8787 5.2092 -0.6947 41 1 9.4199 8.1331 0.2401 42 1 10.4904 7.5463 -1.1056 43 1 11.9967 6.4166 0.4633 44 1 10.8320 8.6285 2.0830 45 1 12.3582 10.4934 4.3895 46 1 10.4929 4.8978 1.6628 47 1 9.4218 6.2672 2.1905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100940847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:58 Heat of formation + Delta-G solvation = -49.453714 kcal Electronic energy + Delta-G solvation = -21120.273446 eV Core-core repulsion = 17916.294857 eV Total energy + Delta-G solvation = -3203.978589 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.85642 -38.47772 -36.69916 -34.66736 -33.64400 -33.25694 -30.41930 -29.64123 -27.33334 -25.10697 -24.93640 -23.73762 -21.77308 -21.30623 -21.01242 -20.28797 -19.02129 -17.13592 -16.88522 -16.45776 -16.05014 -15.60243 -14.91235 -14.78371 -14.37810 -14.25117 -13.96316 -13.55366 -13.45706 -13.18333 -12.94896 -12.69547 -12.61925 -11.91317 -11.82806 -11.75403 -11.71074 -11.36459 -11.25108 -11.23097 -11.04319 -10.93203 -10.82484 -10.78405 -10.53774 -10.24986 -10.16596 -9.81915 -9.78388 -9.46694 -8.99742 -8.86276 -6.96483 -5.78236 -3.07274 2.63715 3.18806 3.42947 3.47327 3.48603 4.36081 4.55016 4.57416 4.58209 4.76163 4.79593 4.90751 4.97362 5.01947 5.08378 5.17354 5.24221 5.32690 5.37414 5.44125 5.46637 5.49276 5.52553 5.62413 5.65383 5.77061 5.78957 5.83374 5.86544 5.94740 5.95748 6.04507 6.09296 6.13017 6.27050 6.31784 6.36523 6.48149 6.59393 6.82891 7.11588 7.50172 7.68250 8.22649 8.40288 9.51177 10.09643 10.43842 11.44047 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037777 B = 0.001977 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.006626 B =14157.357864 C =14394.666463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.105 4.105 6 C -0.141 4.141 7 C 0.507 3.493 8 O -0.545 6.545 9 N -0.727 5.727 10 C 0.131 3.869 11 C -0.127 4.127 12 C -0.142 4.142 13 C 0.165 3.835 14 N -0.713 5.713 15 C -0.245 4.245 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.160 4.160 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.400 0.600 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.053 0.947 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.222 -19.549 -10.252 27.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.158 4.158 5 C -0.143 4.143 6 C -0.181 4.181 7 C 0.293 3.707 8 O -0.422 6.422 9 N -0.379 5.379 10 C 0.008 3.992 11 C -0.146 4.146 12 C -0.182 4.182 13 C 0.053 3.947 14 N -0.351 5.351 15 C -0.377 4.377 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.201 4.201 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.234 0.766 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.586 -18.850 -10.152 27.706 hybrid contribution 1.041 -0.143 0.623 1.222 sum -16.544 -18.993 -9.530 26.931 Atomic orbital electron populations 1.21786 0.95995 1.01482 1.01864 1.21545 0.95812 0.97042 1.01900 1.21623 0.95344 0.96610 1.02316 1.21628 0.95560 0.96602 1.02005 1.21349 0.92791 0.96477 1.03642 1.21700 0.98110 0.94040 1.04258 1.20753 0.82301 0.91693 0.75934 1.90705 1.55351 1.46655 1.49535 1.46108 1.06949 1.09523 1.75274 1.21425 0.93717 0.82068 1.02016 1.22684 0.92554 0.99555 0.99832 1.23424 0.99275 0.95141 1.00322 1.21525 0.93283 0.90194 0.89685 1.42406 1.19483 1.28476 1.44750 1.19260 0.94255 1.07955 1.16204 0.91155 1.24771 0.98430 0.97525 1.00150 1.69652 1.35774 1.15181 1.37407 0.86262 0.83588 0.76901 0.79383 1.21232 1.21673 1.21265 1.23989 1.00565 1.01000 0.94586 0.92734 0.92778 0.92902 0.92143 0.92099 0.91893 0.91943 0.92017 0.91938 0.91184 0.91276 0.89090 0.88970 0.76646 0.91314 0.91896 0.89427 0.90107 0.92005 0.90771 0.78065 0.93395 0.92801 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.49 16 2 C -0.13 -0.73 5.93 -26.72 -0.16 -0.89 16 3 C -0.12 -0.80 5.21 -26.73 -0.14 -0.94 16 4 C -0.12 -0.79 5.21 -26.73 -0.14 -0.93 16 5 C -0.10 -0.90 4.50 -26.73 -0.12 -1.02 16 6 C -0.14 -1.14 5.70 -27.88 -0.16 -1.30 16 7 C 0.51 6.18 7.83 -10.99 -0.09 6.09 16 8 O -0.55 -9.02 15.98 5.56 0.09 -8.93 16 9 N -0.73 -8.08 5.56 -60.29 -0.33 -8.41 16 10 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 11 C -0.13 -1.69 3.76 -89.67 -0.34 -2.03 16 12 C -0.14 -2.26 7.39 -25.92 -0.19 -2.45 16 13 C 0.17 3.19 4.47 -67.12 -0.30 2.89 16 14 N -0.71 -17.85 5.41 -52.64 -0.28 -18.14 16 15 C -0.25 -6.81 9.97 -15.06 -0.15 -6.96 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 19 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C -0.16 -2.64 7.45 -25.77 -0.19 -2.84 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.40 3.35 8.47 -40.82 -0.35 3.00 16 38 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.42 8.11 -51.93 -0.42 0.99 16 44 H 0.39 10.29 7.91 -40.82 -0.32 9.97 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -32.13 382.01 -9.85 -41.98 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -9.06 Total: 7.55 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.72 Total: -9.59 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.10 Total: -54.06 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.13 -9.85 -41.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100940847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.471 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds