Wall clock time and date at job start Tue Mar 31 2020 05:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47378 * 2 1 4 4 C 1.50700 * 109.47132 * 240.00051 * 2 1 3 5 5 H 1.07998 * 120.00084 * 240.00223 * 4 2 1 6 6 C 1.37881 * 120.00134 * 60.00296 * 4 2 1 7 7 N 1.31515 * 119.99424 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00273 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46950 * 89.99614 * 8 6 4 10 10 H 1.48496 * 109.47153 * 209.99893 * 8 6 4 11 11 H 1.48500 * 109.46940 * 330.00107 * 8 6 4 12 12 C 1.52997 * 109.47110 * 120.00007 * 2 1 3 13 13 N 1.46501 * 109.47527 * 299.99953 * 12 2 1 14 14 C 1.34773 * 120.00319 * 179.97438 * 13 12 2 15 15 O 1.21583 * 119.99874 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00119 * 179.97438 * 14 13 12 17 17 C 1.47584 * 134.49098 * 0.02562 * 16 14 13 18 18 C 1.53947 * 86.11565 * 155.35611 * 17 16 14 19 19 C 1.53002 * 113.73874 * 137.95347 * 18 17 16 20 20 C 1.52995 * 113.74136 * 269.25964 * 18 17 16 21 21 C 1.47576 * 134.49404 * 180.02562 * 16 14 13 22 22 C 1.52998 * 113.77022 * 90.34078 * 21 16 14 23 23 C 1.52997 * 113.77006 * 318.94287 * 21 16 14 24 24 H 1.09002 * 109.46906 * 300.00588 * 1 2 3 25 25 H 1.09003 * 109.47034 * 59.99826 * 1 2 3 26 26 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47117 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47085 * 300.00369 * 3 2 1 29 29 H 1.08998 * 109.46712 * 59.99985 * 3 2 1 30 30 H 0.97003 * 119.99325 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47287 * 179.97438 * 12 2 1 32 32 H 1.09006 * 109.46894 * 60.00227 * 12 2 1 33 33 H 0.96998 * 119.99629 * 359.97438 * 13 12 2 34 34 H 1.09001 * 113.76908 * 41.05531 * 17 16 14 35 35 H 1.08997 * 113.76763 * 269.65793 * 17 16 14 36 36 H 1.08995 * 109.47081 * 79.50539 * 19 18 17 37 37 H 1.08998 * 109.46965 * 199.50751 * 19 18 17 38 38 H 1.08999 * 109.46944 * 319.50544 * 19 18 17 39 39 H 1.09004 * 109.47365 * 40.49774 * 20 18 17 40 40 H 1.09001 * 109.47221 * 160.49634 * 20 18 17 41 41 H 1.08998 * 109.47391 * 280.49323 * 20 18 17 42 42 H 1.09003 * 109.46963 * 156.49603 * 22 21 16 43 43 H 1.08993 * 109.47086 * 276.49791 * 22 21 16 44 44 H 1.08996 * 109.47051 * 36.49703 * 22 21 16 45 45 H 1.09007 * 109.47038 * 323.50558 * 23 21 16 46 46 H 1.09004 * 109.47067 * 83.50563 * 23 21 16 47 47 H 1.08996 * 109.47465 * 203.50636 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6033 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4124 10 1 2.4873 -0.1401 -5.1120 11 1 3.6308 -1.7565 -3.7119 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4455 14 6 1.8768 -0.4915 3.6695 15 8 2.5758 -1.4800 3.7810 16 7 1.4281 0.1442 4.7700 17 6 0.5875 1.3340 5.0067 18 6 0.2533 0.6976 6.3680 19 6 0.2431 1.6950 7.5282 20 6 -0.9848 -0.2009 6.3406 21 6 1.5797 -0.0700 6.2222 22 6 2.7819 0.6551 6.8303 23 6 1.4914 -1.5388 6.6415 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7088 1.1614 -3.4844 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7490 1.2492 33 1 0.9943 0.7582 2.3565 34 1 -0.2675 1.4085 4.3348 35 1 1.1526 2.2629 5.0828 36 1 -0.6978 2.2453 7.5261 37 1 0.3473 1.1572 8.4706 38 1 1.0725 2.3930 7.4146 39 1 -0.9875 -0.7878 5.4221 40 1 -0.9664 -0.8711 7.2000 41 1 -1.8825 0.4161 6.3803 42 1 2.6124 0.8091 7.8960 43 1 3.6792 0.0529 6.6884 44 1 2.9105 1.6199 6.3397 45 1 0.7523 -2.0492 6.0239 46 1 2.4641 -2.0130 6.5107 47 1 1.1950 -1.6006 7.6885 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117866456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:56 Heat of formation + Delta-G solvation = -12.035059 kcal Electronic energy + Delta-G solvation = -23805.772522 eV Core-core repulsion = 20603.416528 eV Total energy + Delta-G solvation = -3202.355994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.05946 -38.42447 -36.17276 -33.24374 -32.30230 -31.56754 -30.50942 -28.89433 -26.74750 -26.06777 -25.68912 -25.38933 -24.38039 -22.58358 -19.93971 -18.72011 -17.88854 -16.88929 -16.02476 -15.77657 -15.61282 -15.08687 -14.68645 -14.32226 -14.07684 -13.69090 -13.47666 -12.87105 -12.76083 -12.68052 -12.56089 -12.40717 -12.13517 -12.05988 -11.91476 -11.75494 -11.66387 -11.36653 -11.20641 -11.13220 -10.94975 -10.82872 -10.66332 -10.34566 -10.17191 -10.14426 -9.59138 -9.51430 -9.23964 -8.75450 -8.59139 -8.36948 -8.04003 -5.99248 -4.08920 2.80772 3.30337 3.37083 3.41688 3.72748 4.02839 4.33875 4.46386 4.70373 4.80072 4.93488 4.97080 5.15789 5.27505 5.31220 5.41983 5.48217 5.54085 5.56387 5.68595 5.69522 5.75201 5.84551 5.88532 5.90057 6.05630 6.08989 6.25677 6.33232 6.40834 6.42297 6.55872 6.85734 6.86785 6.99260 7.07166 7.18682 7.41691 7.59483 7.69309 7.73934 8.04372 8.16328 8.42426 8.58119 8.91078 9.18079 9.56576 11.02213 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032880 B = 0.003812 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.372161 B = 7343.642657 C = 7608.858354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.504 4.504 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.152 3.848 13 N -0.732 5.732 14 C 0.721 3.279 15 O -0.596 6.596 16 N -0.657 5.657 17 C 0.106 3.894 18 C -0.092 4.092 19 C -0.136 4.136 20 C -0.125 4.125 21 C 0.185 3.815 22 C -0.148 4.148 23 C -0.142 4.142 24 H 0.004 0.996 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.004 0.996 30 H 0.259 0.741 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.392 0.608 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.632 3.828 19.428 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.029 3.971 13 N -0.386 5.386 14 C 0.424 3.576 15 O -0.475 6.475 16 N -0.398 5.398 17 C -0.018 4.018 18 C -0.093 4.093 19 C -0.194 4.194 20 C -0.182 4.182 21 C 0.099 3.901 22 C -0.206 4.206 23 C -0.199 4.199 24 H 0.023 0.977 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.103 0.897 29 H 0.023 0.977 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.226 0.774 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.099 3.074 19.100 19.593 hybrid contribution 0.140 0.008 -1.071 1.080 sum -2.959 3.082 18.029 18.529 Atomic orbital electron populations 1.21801 0.97797 0.99080 0.99894 1.18363 0.92785 0.92777 0.90573 1.21800 0.98514 0.98373 0.99893 1.20993 1.31367 1.12040 0.89876 0.92438 1.24878 0.94902 0.94925 0.98818 1.69813 1.36792 1.22780 1.23140 0.86570 0.79340 0.79372 0.82586 1.20730 1.21291 1.19900 1.21559 0.97761 0.95367 0.82455 1.45471 1.55780 1.32953 1.04379 1.15615 0.79626 0.82651 0.79660 1.90864 1.43117 1.27982 1.85553 1.49321 1.55502 1.30356 1.04631 1.23224 0.93743 0.89728 0.95102 1.22476 0.95398 0.96364 0.95057 1.21740 1.02185 0.98278 0.97192 1.21548 0.95230 0.98901 1.02529 1.21905 0.93676 0.95840 0.78655 1.21973 0.97445 1.00621 1.00589 1.21843 1.03257 0.94341 1.00502 0.97671 0.89677 0.95515 0.95517 0.89680 0.97662 0.93069 0.93114 0.93116 0.77375 0.90392 0.90290 0.92144 0.92127 0.91981 0.91980 0.92013 0.92213 0.91056 0.91861 0.92021 0.91737 0.91739 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 2 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 3 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 4 C -0.50 -13.50 8.01 -34.44 -0.28 -13.78 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.91 9.35 55.43 0.52 -23.39 16 8 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.15 3.42 4.50 -4.04 -0.02 3.40 16 13 N -0.73 -14.27 4.96 -65.23 -0.32 -14.59 16 14 C 0.72 14.03 8.66 -86.92 -0.75 13.28 16 15 O -0.60 -13.77 16.52 5.29 0.09 -13.68 16 16 N -0.66 -9.72 3.15 -168.89 -0.53 -10.25 16 17 C 0.11 1.16 7.19 -2.97 -0.02 1.14 16 18 C -0.09 -0.86 1.31 -153.58 -0.20 -1.06 16 19 C -0.14 -0.93 8.06 37.16 0.30 -0.63 16 20 C -0.12 -1.14 7.90 37.15 0.29 -0.85 16 21 C 0.18 2.18 1.49 -130.76 -0.19 1.98 16 22 C -0.15 -1.52 8.07 37.16 0.30 -1.22 16 23 C -0.14 -1.72 7.63 37.16 0.28 -1.43 16 24 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 25 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 29 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.39 7.02 5.77 -40.82 -0.24 6.79 16 34 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.08 0.78 7.64 -51.93 -0.40 0.38 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.40 7.01 -51.93 -0.36 0.04 16 39 H 0.06 0.71 7.71 -51.93 -0.40 0.31 16 40 H 0.06 0.51 7.57 -51.93 -0.39 0.11 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.55 7.41 -51.93 -0.38 0.16 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.63 7.35 -51.93 -0.38 0.25 16 45 H 0.06 0.88 7.26 -51.92 -0.38 0.50 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.06 0.58 8.06 -51.93 -0.42 0.16 16 LS Contribution 358.55 15.07 5.40 5.40 Total: -1.00 -29.98 358.55 -8.19 -38.17 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.46 Total: 3.93 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 0.14 Total: -1.58 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.34 Total: -48.23 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.68 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.98 -8.19 -38.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117866456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.130 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds