Wall clock time and date at job start Tue Mar 31 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47244 * 2 1 4 4 C 1.52998 * 109.46741 * 299.99958 * 3 2 1 5 5 C 1.53003 * 109.46884 * 59.99955 * 3 2 1 6 6 C 1.50695 * 109.47363 * 179.97438 * 3 2 1 7 7 O 1.21287 * 119.99760 * 359.97438 * 6 3 2 8 8 N 1.34776 * 120.00204 * 179.97438 * 6 3 2 9 9 C 1.46500 * 119.99913 * 179.97438 * 8 6 3 10 10 H 1.08987 * 109.49967 * 324.93957 * 9 8 6 11 11 C 1.53036 * 109.49426 * 204.83686 * 9 8 6 12 12 C 1.53048 * 109.53482 * 178.68713 * 11 9 8 13 13 C 1.53185 * 109.31455 * 61.36920 * 12 11 9 14 14 H 1.09003 * 109.70685 * 65.21654 * 13 12 11 15 15 C 1.52998 * 109.58758 * 185.57689 * 13 12 11 16 16 N 1.46931 * 108.77310 * 305.36713 * 13 12 11 17 17 C 1.36938 * 120.62426 * 233.62946 * 16 13 12 18 18 H 1.08001 * 120.00264 * 29.00282 * 17 16 13 19 19 C 1.38820 * 119.99466 * 208.99948 * 17 16 13 20 20 N 1.31614 * 120.00305 * 15.02872 * 19 17 16 21 21 Si 1.86803 * 119.99497 * 195.03186 * 19 17 16 22 22 H 1.48497 * 109.47521 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46884 * 120.00408 * 21 19 17 24 24 H 1.48501 * 109.46846 * 239.99838 * 21 19 17 25 25 C 1.46922 * 118.74110 * 53.60514 * 16 13 12 26 26 H 1.08994 * 109.47377 * 299.99826 * 1 2 3 27 27 H 1.08996 * 109.47247 * 60.00459 * 1 2 3 28 28 H 1.09008 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47205 * 120.00097 * 2 1 3 30 30 H 1.09002 * 109.47190 * 239.99885 * 2 1 3 31 31 H 1.09004 * 109.47429 * 60.00444 * 4 3 2 32 32 H 1.09006 * 109.47039 * 179.97438 * 4 3 2 33 33 H 1.08991 * 109.47709 * 299.99897 * 4 3 2 34 34 H 1.08996 * 109.47084 * 60.00198 * 5 3 2 35 35 H 1.08998 * 109.46808 * 180.02562 * 5 3 2 36 36 H 1.09005 * 109.47004 * 299.99947 * 5 3 2 37 37 H 0.97002 * 119.99913 * 0.02562 * 8 6 3 38 38 H 1.08997 * 109.46829 * 298.70899 * 11 9 8 39 39 H 1.09000 * 109.46218 * 58.67238 * 11 9 8 40 40 H 1.08995 * 109.49659 * 301.41392 * 12 11 9 41 41 H 1.09006 * 109.52062 * 181.33517 * 12 11 9 42 42 H 1.09004 * 109.46825 * 179.28830 * 15 13 12 43 43 H 1.08997 * 109.46817 * 299.28815 * 15 13 12 44 44 H 1.09002 * 109.47077 * 59.29105 * 15 13 12 45 45 H 0.97000 * 119.99779 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.58868 * 186.60230 * 25 16 13 47 47 H 1.09000 * 109.58407 * 66.18227 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 -1.2493 5 6 1.5300 2.1637 1.2493 6 6 3.5469 1.4425 0.0006 7 8 4.1534 0.3921 0.0015 8 7 4.2208 2.6097 0.0002 9 6 5.6858 2.6097 0.0014 10 1 6.0491 1.7692 0.5925 11 6 6.1961 3.9194 0.6067 12 6 7.7262 3.9066 0.6385 13 6 8.2617 3.7943 -0.7923 14 1 7.9965 4.6892 -1.3553 15 6 9.7837 3.6412 -0.7598 16 7 7.6615 2.6149 -1.4308 17 6 8.4510 1.6569 -2.0088 18 1 9.4483 1.4805 -1.6336 19 6 7.9694 0.9126 -3.0770 20 7 6.8943 1.3095 -3.7241 21 14 8.8473 -0.6526 -3.5957 22 1 10.0210 -0.8773 -2.7142 23 1 7.9154 -1.8033 -3.4832 24 1 9.3037 -0.5210 -5.0027 25 6 6.1982 2.4827 -1.4367 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 0.4399 2.1638 -1.2493 32 1 1.8930 3.1915 -1.2491 33 1 1.8932 1.6499 -2.1392 34 1 1.8933 1.6499 2.1392 35 1 1.8929 3.1915 1.2490 36 1 0.4399 2.1637 1.2492 37 1 3.7358 3.4498 -0.0001 38 1 5.8525 4.7577 0.0008 39 1 5.8128 4.0240 1.6217 40 1 8.0708 3.0542 1.2238 41 1 8.0889 4.8294 1.0913 42 1 10.1614 3.5488 -1.7781 43 1 10.2269 4.5170 -0.2859 44 1 10.0470 2.7486 -0.1923 45 1 6.5580 0.7895 -4.4708 46 1 5.9210 1.5083 -1.8387 47 1 5.7627 3.2710 -2.0508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132252775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:22 Heat of formation + Delta-G solvation = -40.095063 kcal Electronic energy + Delta-G solvation = -24088.353688 eV Core-core repulsion = 20884.780920 eV Total energy + Delta-G solvation = -3203.572768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.94965 -37.85311 -36.03215 -34.34282 -32.77918 -31.02716 -29.91598 -29.51013 -27.37986 -26.00311 -25.04280 -24.56130 -22.28364 -21.57687 -20.23874 -19.38655 -18.48975 -16.65211 -16.36526 -15.63994 -15.19984 -14.87484 -14.27888 -14.10903 -13.87792 -13.75358 -13.62790 -13.33710 -12.89209 -12.53717 -12.43173 -12.34075 -12.17553 -11.92121 -11.83877 -11.43085 -11.36425 -11.21348 -11.08296 -10.84617 -10.68585 -10.57548 -10.55627 -10.44760 -10.35351 -10.21224 -9.91572 -9.66846 -9.40107 -9.07529 -8.43016 -8.36635 -6.56874 -5.69666 -3.14022 3.16499 3.44479 3.52484 3.53609 3.63765 4.56992 4.71156 4.82625 4.92438 5.25731 5.31147 5.38592 5.41256 5.46814 5.51379 5.56161 5.60032 5.61500 5.71431 5.77764 5.83883 5.90942 6.00566 6.02001 6.08301 6.14652 6.16948 6.30355 6.35287 6.36412 6.42360 6.46631 6.49446 6.56450 6.66238 6.80306 7.05490 7.07961 7.15950 7.38767 7.80987 7.90314 8.05358 8.54716 8.78639 9.29238 9.93579 10.48643 11.38246 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016193 B = 0.005777 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.770513 B = 4845.752874 C = 6096.388558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.100 4.100 3 C -0.082 4.082 4 C -0.141 4.141 5 C -0.139 4.139 6 C 0.518 3.482 7 O -0.533 6.533 8 N -0.720 5.720 9 C 0.116 3.884 10 H 0.080 0.920 11 C -0.116 4.116 12 C -0.126 4.126 13 C 0.165 3.835 14 H 0.024 0.976 15 C -0.137 4.137 16 N -0.584 5.584 17 C -0.251 4.251 18 H 0.071 0.929 19 C 0.005 3.995 20 N -0.900 5.900 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.169 3.831 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.390 0.610 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.037 0.963 44 H 0.053 0.947 45 H 0.251 0.749 46 H 0.095 0.905 47 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.939 5.461 9.129 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.138 4.138 3 C -0.086 4.086 4 C -0.199 4.199 5 C -0.197 4.197 6 C 0.303 3.697 7 O -0.409 6.409 8 N -0.370 5.370 9 C 0.011 3.989 10 H 0.098 0.902 11 C -0.154 4.154 12 C -0.166 4.166 13 C 0.058 3.942 14 H 0.042 0.958 15 C -0.194 4.194 16 N -0.308 5.308 17 C -0.381 4.381 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.545 5.545 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.218 1.218 25 C 0.042 3.958 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.223 0.777 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.113 0.887 47 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -10.525 4.609 8.976 14.581 hybrid contribution 0.114 -0.344 -0.380 0.525 sum -10.412 4.265 8.595 14.159 Atomic orbital electron populations 1.21912 0.95880 1.01548 1.01768 1.21335 0.94949 0.94042 1.03490 1.20806 0.92286 0.98088 0.97389 1.21895 1.01296 1.00096 0.96567 1.21891 1.01558 0.99890 0.96349 1.20408 0.89233 0.84011 0.76033 1.90725 1.70073 1.31262 1.48850 1.46073 1.07851 1.07882 1.75184 1.21948 0.77550 0.97559 1.01842 0.90229 1.21674 0.97031 0.97355 0.99339 1.22041 0.94219 1.00583 0.99723 1.20480 0.92358 0.90597 0.90715 0.95813 1.21805 0.95880 0.99699 1.02017 1.44046 1.01289 1.20207 1.65231 1.19191 0.98640 1.11241 1.09008 0.91186 1.25069 0.98246 1.00118 0.95921 1.70005 1.24912 1.38174 1.21368 0.86266 0.79039 0.83858 0.77876 1.20243 1.21546 1.21830 1.21082 0.83141 1.02510 0.89087 0.92617 0.92438 0.92803 0.91456 0.91115 0.91537 0.92267 0.91724 0.92286 0.92355 0.91434 0.77686 0.92391 0.93203 0.92121 0.92765 0.92001 0.94371 0.92821 0.93851 0.88669 0.96684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.21 37.16 0.34 -1.16 16 2 C -0.10 -1.32 4.28 -26.73 -0.11 -1.43 16 3 C -0.08 -1.07 0.64 -155.66 -0.10 -1.17 16 4 C -0.14 -1.64 8.02 37.16 0.30 -1.35 16 5 C -0.14 -1.41 8.02 37.16 0.30 -1.11 16 6 C 0.52 9.23 6.45 -10.99 -0.07 9.16 16 7 O -0.53 -12.19 15.65 5.55 0.09 -12.11 16 8 N -0.72 -11.97 4.87 -53.70 -0.26 -12.23 16 9 C 0.12 2.31 2.60 -67.81 -0.18 2.14 16 10 H 0.08 1.82 7.58 -51.94 -0.39 1.42 16 11 C -0.12 -1.91 5.35 -26.69 -0.14 -2.05 16 12 C -0.13 -2.18 5.37 -26.61 -0.14 -2.32 16 13 C 0.17 3.43 3.50 -67.60 -0.24 3.20 16 14 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 15 C -0.14 -2.60 7.94 37.16 0.30 -2.31 16 16 N -0.58 -14.78 2.99 -164.78 -0.49 -15.28 16 17 C -0.25 -6.99 8.60 -15.06 -0.13 -7.11 16 18 H 0.07 1.90 6.21 -52.49 -0.33 1.57 16 19 C 0.01 0.15 4.96 -17.43 -0.09 0.06 16 20 N -0.90 -26.99 11.14 55.49 0.62 -26.37 16 21 Si 0.90 22.73 29.58 -169.99 -5.03 17.70 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 C 0.17 4.16 4.86 -3.71 -0.02 4.14 16 26 H 0.05 0.47 6.43 -51.93 -0.33 0.14 16 27 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 28 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 32 H 0.06 0.64 7.57 -51.93 -0.39 0.24 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.53 7.56 -51.93 -0.39 0.13 16 36 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 37 H 0.39 5.19 7.44 -40.82 -0.30 4.88 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.27 7.62 -51.93 -0.40 0.87 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.05 1.04 7.44 -51.93 -0.39 0.66 16 45 H 0.25 7.34 8.31 -40.82 -0.34 7.01 16 46 H 0.10 2.78 6.06 -51.93 -0.31 2.46 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -32.43 354.47 -8.17 -40.60 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.44 Total: 3.67 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 0.01 Total: -1.33 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.14 Total: -53.88 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.43 -8.17 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132252775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.503 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds