Wall clock time and date at job start Tue Mar 31 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46765 * 2 1 4 4 C 1.53003 * 109.46794 * 182.71337 * 3 2 1 5 5 C 1.50700 * 115.54980 * 279.61629 * 4 3 2 6 6 O 1.21282 * 120.00041 * 139.67990 * 5 4 3 7 7 N 1.34777 * 119.99854 * 319.68507 * 5 4 3 8 8 C 1.46503 * 119.99781 * 174.77087 * 7 5 4 9 9 H 1.08994 * 109.47322 * 325.00254 * 8 7 5 10 10 C 1.53000 * 109.46862 * 84.99754 * 8 7 5 11 11 C 1.52996 * 109.47421 * 204.99688 * 8 7 5 12 12 C 1.53001 * 109.46811 * 64.99850 * 11 8 7 13 13 H 1.08992 * 109.47239 * 304.99984 * 12 11 8 14 14 C 1.53004 * 109.46984 * 185.00025 * 12 11 8 15 15 N 1.46504 * 109.46780 * 65.00652 * 12 11 8 16 16 C 1.36936 * 119.99648 * 204.99774 * 15 12 11 17 17 H 1.07999 * 120.00095 * 359.97438 * 16 15 12 18 18 C 1.38810 * 119.99854 * 179.97438 * 16 15 12 19 19 N 1.31618 * 120.00349 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99905 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46861 * 60.00386 * 20 18 16 22 22 H 1.48501 * 109.47374 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47327 * 300.00498 * 20 18 16 24 24 C 1.52998 * 117.49870 * 65.29327 * 4 3 2 25 25 C 1.52994 * 60.03381 * 107.47500 * 24 4 3 26 26 H 1.08996 * 109.47118 * 60.00107 * 1 2 3 27 27 H 1.09001 * 109.46657 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46904 * 299.99784 * 1 2 3 29 29 H 1.08998 * 109.47291 * 240.00435 * 2 1 3 30 30 H 1.08996 * 109.47118 * 119.99893 * 2 1 3 31 31 H 1.09002 * 109.47113 * 62.71214 * 3 2 1 32 32 H 1.08998 * 109.46839 * 302.71529 * 3 2 1 33 33 H 0.96998 * 120.00412 * 354.76635 * 7 5 4 34 34 H 1.09006 * 109.47415 * 180.02562 * 10 8 7 35 35 H 1.09008 * 109.47281 * 300.00064 * 10 8 7 36 36 H 1.09003 * 109.47266 * 59.99820 * 10 8 7 37 37 H 1.08993 * 109.47287 * 185.00260 * 11 8 7 38 38 H 1.08999 * 109.47008 * 305.00357 * 11 8 7 39 39 H 1.08999 * 109.46943 * 60.00353 * 14 12 11 40 40 H 1.08995 * 109.47054 * 180.02562 * 14 12 11 41 41 H 1.08998 * 109.47054 * 300.00504 * 14 12 11 42 42 H 0.96994 * 120.00097 * 24.99808 * 15 12 11 43 43 H 0.96991 * 120.00262 * 179.97438 * 19 18 16 44 44 H 1.09001 * 117.49438 * 214.97879 * 24 4 3 45 45 H 1.09003 * 117.50177 * 359.96783 * 24 4 3 46 46 H 1.09001 * 117.50167 * 107.49757 * 25 24 4 47 47 H 1.09008 * 117.50032 * 252.52110 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5685 1.4431 -0.0683 5 6 4.2776 1.1951 1.2381 6 8 5.2642 0.4904 1.2684 7 7 3.8152 1.7563 2.3729 8 6 4.4339 1.4249 3.6589 9 1 4.7477 0.3811 3.6528 10 6 5.6523 2.3223 3.8849 11 6 3.4214 1.6466 4.7843 12 6 2.2610 0.6618 4.6276 13 1 1.8317 0.7618 3.6308 14 6 1.1897 0.9649 5.6770 15 7 2.7529 -0.7057 4.8127 16 6 2.0846 -1.7566 4.2432 17 1 1.1948 -1.5773 3.6581 18 6 2.5509 -3.0523 4.4181 19 7 3.6350 -3.2709 5.1317 20 14 1.6388 -4.4859 3.6419 21 1 1.6068 -4.3121 2.1674 22 1 2.3344 -5.7546 3.9763 23 1 0.2499 -4.5306 4.1653 24 6 4.2190 0.8957 -1.3403 25 6 4.2311 2.4001 -1.0624 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7169 1.9422 0.9133 32 1 1.6374 1.9702 -0.8646 33 1 3.0729 2.3797 2.3383 34 1 6.1130 2.0754 4.8415 35 1 6.3737 2.1643 3.0831 36 1 5.3386 3.3662 3.8909 37 1 3.9070 1.4859 5.7467 38 1 3.0412 2.6669 4.7350 39 1 0.8238 1.9823 5.5394 40 1 0.3633 0.2630 5.5657 41 1 1.6191 0.8649 6.6739 42 1 3.5518 -0.8668 5.3385 43 1 3.9606 -4.1763 5.2542 44 1 5.1600 0.3563 -1.2322 45 1 3.5581 0.5346 -2.1283 46 1 5.1800 2.8507 -0.7716 47 1 3.5777 3.0290 -1.6674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135431338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:04 Heat of formation + Delta-G solvation = -29.386641 kcal Electronic energy + Delta-G solvation = -24004.176317 eV Core-core repulsion = 20801.067901 eV Total energy + Delta-G solvation = -3203.108415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.03455 -37.53112 -36.31272 -34.41740 -33.52277 -32.08896 -30.63004 -28.56011 -27.32429 -26.27889 -23.82659 -23.44633 -22.62495 -21.26191 -20.72963 -19.65311 -19.19728 -17.20695 -16.81116 -15.94383 -15.01903 -14.92302 -14.56335 -14.19466 -14.12649 -13.82450 -13.60221 -13.27525 -12.94238 -12.72643 -12.61361 -12.17398 -12.07686 -11.90544 -11.69907 -11.63025 -11.52850 -11.47056 -11.14405 -10.98717 -10.78527 -10.57566 -10.51585 -10.42814 -10.29331 -10.20856 -9.86831 -9.86196 -9.57039 -9.32800 -8.83090 -8.60395 -6.87546 -5.68596 -2.96239 2.87686 3.47915 3.50995 3.52477 3.53343 3.86536 4.61698 4.65762 4.81005 4.85530 5.02593 5.19682 5.30279 5.37088 5.45578 5.48706 5.53354 5.56008 5.66067 5.73925 5.76924 5.84017 5.91689 5.93173 5.95031 5.99673 6.00222 6.05948 6.17712 6.18584 6.28545 6.33387 6.40509 6.41695 6.48748 6.58941 6.61767 6.77926 6.88220 7.00214 7.11417 7.75840 7.92380 8.49814 8.67237 9.60995 10.18796 10.52971 11.54236 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.006888 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.242509 B = 4064.023060 C = 4980.668520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C -0.074 4.074 4 C -0.158 4.158 5 C 0.553 3.447 6 O -0.535 6.535 7 N -0.712 5.712 8 C 0.145 3.855 9 H 0.104 0.896 10 C -0.161 4.161 11 C -0.131 4.131 12 C 0.172 3.828 13 H 0.046 0.954 14 C -0.165 4.165 15 N -0.719 5.719 16 C -0.232 4.232 17 H 0.066 0.934 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.900 3.100 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.288 1.288 24 C -0.144 4.144 25 C -0.156 4.156 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.393 0.607 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.033 0.967 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.382 0.618 43 H 0.254 0.746 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.413 15.042 -9.220 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.112 4.112 4 C -0.161 4.161 5 C 0.338 3.662 6 O -0.412 6.412 7 N -0.362 5.362 8 C 0.041 3.959 9 H 0.122 0.878 10 C -0.219 4.219 11 C -0.170 4.170 12 C 0.062 3.938 13 H 0.064 0.936 14 C -0.226 4.226 15 N -0.361 5.361 16 C -0.363 4.363 17 H 0.084 0.916 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.731 3.269 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.215 1.215 24 C -0.181 4.181 25 C -0.193 4.193 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.227 0.773 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.124 0.876 45 H 0.118 0.882 46 H 0.113 0.887 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.802 14.378 -9.260 17.197 hybrid contribution -0.684 -0.662 -0.110 0.959 sum -2.487 13.716 -9.370 16.796 Atomic orbital electron populations 1.21731 0.95885 1.01802 1.01156 1.21531 0.95593 0.96018 1.03310 1.21125 0.89938 0.97984 1.02137 1.21583 0.95760 1.08192 0.90565 1.19308 0.83683 0.79032 0.84148 1.90697 1.26233 1.37977 1.86275 1.45876 1.36895 1.46957 1.06511 1.21015 0.91999 1.01288 0.81621 0.87844 1.22183 0.98534 0.99188 1.01992 1.22169 0.97364 0.99236 0.98198 1.20214 0.91485 0.85787 0.96295 0.93569 1.22461 1.00697 0.98703 1.00695 1.42381 1.31865 0.99719 1.62137 1.19089 1.06358 0.85949 1.24919 0.91571 1.24675 0.97929 0.97260 1.00887 1.69628 1.23997 1.20134 1.44284 0.86372 0.78845 0.82581 0.79058 1.21296 1.21779 1.21469 1.22947 1.02984 0.95783 0.96383 1.23056 1.02081 0.93342 1.00864 0.93379 0.92659 0.92649 0.92116 0.90577 0.91369 0.91497 0.77306 0.91861 0.92531 0.93248 0.90699 0.92157 0.94784 0.92945 0.93579 0.78387 0.93584 0.87583 0.88202 0.88664 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.13 -1.77 5.85 -26.72 -0.16 -1.92 16 3 C -0.07 -0.87 5.09 -26.73 -0.14 -1.00 16 4 C -0.16 -2.09 1.97 -155.62 -0.31 -2.40 16 5 C 0.55 9.42 7.28 -10.99 -0.08 9.34 16 6 O -0.54 -11.54 15.94 5.56 0.09 -11.45 16 7 N -0.71 -10.74 4.30 -53.81 -0.23 -10.97 16 8 C 0.14 2.40 2.48 -67.93 -0.17 2.23 16 9 H 0.10 2.25 7.14 -51.93 -0.37 1.88 16 10 C -0.16 -2.30 9.48 37.16 0.35 -1.94 16 11 C -0.13 -2.02 4.29 -26.73 -0.11 -2.14 16 12 C 0.17 3.24 2.84 -67.93 -0.19 3.05 16 13 H 0.05 0.89 7.56 -51.93 -0.39 0.49 16 14 C -0.17 -2.89 9.49 37.16 0.35 -2.53 16 15 N -0.72 -17.55 4.49 -53.42 -0.24 -17.79 16 16 C -0.23 -6.38 9.93 -15.06 -0.15 -6.53 16 17 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -28.61 13.06 55.49 0.72 -27.88 16 20 Si 0.90 22.94 29.55 -169.99 -5.02 17.91 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C -0.14 -1.79 9.29 -26.74 -0.25 -2.04 16 25 C -0.16 -1.66 9.89 -26.70 -0.26 -1.92 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.82 7.57 -51.93 -0.39 0.43 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.07 0.76 6.80 -51.93 -0.35 0.40 16 32 H 0.07 0.64 7.95 -51.93 -0.41 0.23 16 33 H 0.39 4.85 7.35 -40.82 -0.30 4.55 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.89 8.09 -51.92 -0.42 0.47 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 43 H 0.25 7.64 8.31 -40.82 -0.34 7.31 16 44 H 0.11 1.52 7.68 -51.93 -0.40 1.12 16 45 H 0.10 1.07 7.93 -51.93 -0.41 0.65 16 46 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.10 0.83 8.08 -51.92 -0.42 0.41 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -32.28 379.71 -8.61 -40.88 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -8.81 Total: 13.27 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.84 Total: -9.70 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.25 Total: -56.64 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.28 -8.61 -40.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135431338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.496 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds