Wall clock time and date at job start Tue Mar 31 2020 05:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47219 * 2 1 4 4 C 1.53004 * 109.47553 * 239.99744 * 2 1 3 5 5 C 1.52999 * 109.47252 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47141 * 59.99827 * 5 4 2 7 7 C 1.53004 * 109.47188 * 300.00211 * 6 5 4 8 8 C 1.52999 * 109.47252 * 59.99856 * 7 6 5 9 9 H 1.08998 * 109.46866 * 60.00102 * 8 7 6 10 10 C 1.52997 * 109.46793 * 179.97438 * 8 7 6 11 11 C 1.50694 * 109.47456 * 295.00113 * 10 8 7 12 12 O 1.21283 * 120.00146 * 0.02562 * 11 10 8 13 13 N 1.34777 * 120.00104 * 180.02562 * 11 10 8 14 14 C 1.46504 * 119.99858 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46932 * 179.97438 * 14 13 11 16 16 N 1.46504 * 109.46932 * 180.02562 * 15 14 13 17 17 C 1.36934 * 119.99567 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00537 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99798 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00134 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00229 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 299.99987 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00079 * 21 19 17 25 25 H 1.08994 * 109.47655 * 300.00343 * 1 2 3 26 26 H 1.09007 * 109.46855 * 60.00775 * 1 2 3 27 27 H 1.09006 * 109.47239 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46990 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46681 * 299.99646 * 3 2 1 30 30 H 1.09001 * 109.46892 * 59.99613 * 3 2 1 31 31 H 1.09000 * 109.46703 * 300.00650 * 4 2 1 32 32 H 1.09003 * 109.46748 * 59.99861 * 4 2 1 33 33 H 1.09001 * 109.46729 * 180.02562 * 5 4 2 34 34 H 1.08998 * 109.46866 * 299.99898 * 5 4 2 35 35 H 1.09006 * 109.46999 * 59.99972 * 6 5 4 36 36 H 1.08997 * 109.46966 * 179.97438 * 6 5 4 37 37 H 1.09006 * 109.46955 * 299.99787 * 7 6 5 38 38 H 1.09003 * 109.46748 * 180.02562 * 7 6 5 39 39 H 1.09006 * 109.46910 * 175.00327 * 10 8 7 40 40 H 1.09002 * 109.47542 * 55.00477 * 10 8 7 41 41 H 0.97000 * 120.00323 * 359.97438 * 13 11 10 42 42 H 1.08998 * 109.47306 * 59.99432 * 14 13 11 43 43 H 1.09005 * 109.46713 * 299.99331 * 14 13 11 44 44 H 1.08998 * 109.47524 * 59.99644 * 15 14 13 45 45 H 1.08997 * 109.47093 * 299.99545 * 15 14 13 46 46 H 0.97000 * 119.99825 * 359.97438 * 16 15 14 47 47 H 0.97005 * 119.99717 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7218 -1.2488 6 6 4.0795 -1.4433 0.0005 7 6 3.5694 -0.7220 1.2497 8 6 2.0394 -0.7215 1.2493 9 1 1.6758 -1.7491 1.2491 10 6 1.5294 -0.0008 2.4988 11 6 1.9275 -0.7798 3.7258 12 8 2.5576 -1.8099 3.6122 13 7 1.5834 -0.3319 4.9495 14 6 1.9710 -1.0890 6.1424 15 6 1.4608 -0.3682 7.3919 16 7 1.8489 -1.1250 8.5848 17 6 1.5003 -0.6692 9.8281 18 1 0.9396 0.2483 9.9294 19 6 1.8675 -1.3865 10.9584 20 7 2.5503 -2.5050 10.8350 21 14 1.3925 -0.7645 12.6546 22 1 1.8993 -1.7046 13.6863 23 1 1.9866 0.5787 12.8734 24 1 -0.0865 -0.6736 12.7522 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.9334 -1.2353 -2.1390 34 1 3.9337 0.3057 -1.2486 35 1 3.7158 -2.4709 0.0003 36 1 5.1695 -1.4441 0.0005 37 1 3.9331 0.3056 1.2499 38 1 3.9328 -1.2359 2.1397 39 1 0.4431 0.0778 2.4550 40 1 1.9643 0.9977 2.5454 41 1 1.0798 0.4921 5.0405 42 1 3.0573 -1.1669 6.1863 43 1 1.5366 -2.0877 6.0958 44 1 0.3745 -0.2899 7.3482 45 1 1.8954 0.6303 7.4383 46 1 2.3528 -1.9488 8.4938 47 1 2.7973 -2.8278 9.9542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153836757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:34 Heat of formation + Delta-G solvation = -61.764484 kcal Electronic energy + Delta-G solvation = -22631.160804 eV Core-core repulsion = 19426.648380 eV Total energy + Delta-G solvation = -3204.512424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.60777 -38.95365 -35.83975 -34.06165 -33.66556 -32.49074 -31.19897 -28.60172 -27.65360 -27.08464 -25.77055 -23.46140 -22.35914 -21.60985 -21.17103 -20.12654 -18.37924 -17.42728 -17.07867 -15.83926 -15.63441 -15.37799 -14.95934 -14.68216 -14.43388 -14.38621 -14.06127 -13.67332 -13.59033 -13.24298 -13.01680 -12.86751 -12.68147 -12.17767 -12.05330 -11.87893 -11.65850 -11.49041 -11.40219 -11.20547 -11.12859 -10.89378 -10.71973 -10.65361 -10.33620 -10.24288 -10.09265 -10.00872 -9.56605 -9.21634 -8.99167 -8.83702 -7.08047 -6.14194 -3.15583 2.74630 3.27492 3.50279 3.53923 3.71685 4.34486 4.41751 4.45597 4.66509 4.79734 4.85460 4.91816 5.05889 5.10663 5.15231 5.23105 5.33565 5.38352 5.40363 5.45377 5.47993 5.51255 5.56701 5.64112 5.67291 5.71237 5.72350 5.78184 5.82049 5.84765 5.94987 5.99175 6.02941 6.05041 6.11793 6.18449 6.36571 6.39324 6.48872 6.61831 6.69250 7.61836 7.75062 8.34769 8.71757 9.16955 10.03351 10.16981 11.34233 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040966 B = 0.002583 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.334646 B =10836.569358 C =11200.520717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.106 4.106 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.057 4.057 9 H 0.077 0.923 10 C -0.141 4.141 11 C 0.508 3.492 12 O -0.539 6.539 13 N -0.726 5.726 14 C 0.110 3.890 15 C 0.150 3.850 16 N -0.741 5.741 17 C -0.336 4.336 18 H 0.066 0.934 19 C -0.044 4.044 20 N -0.941 5.941 21 Si 1.083 2.917 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.294 1.294 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.399 0.601 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.369 0.631 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 8.030 -26.529 27.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.061 4.061 3 C -0.205 4.205 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.075 4.075 9 H 0.096 0.904 10 C -0.181 4.181 11 C 0.295 3.705 12 O -0.416 6.416 13 N -0.378 5.378 14 C -0.014 4.014 15 C 0.022 3.978 16 N -0.388 5.388 17 C -0.467 4.467 18 H 0.084 0.916 19 C -0.242 4.242 20 N -0.586 5.586 21 Si 0.913 3.087 22 H -0.209 1.209 23 H -0.222 1.222 24 H -0.222 1.222 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.233 0.767 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.043 0.957 46 H 0.202 0.798 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.910 7.164 -24.926 26.005 hybrid contribution -0.291 0.575 -1.600 1.725 sum -2.201 7.739 -26.526 27.720 Atomic orbital electron populations 1.21962 0.94783 1.01892 1.01701 1.20548 0.95051 0.95510 0.94948 1.22036 1.01641 0.95284 1.01499 1.21564 0.95634 1.00368 0.96797 1.21597 0.95645 1.00802 0.97870 1.21491 0.99933 0.99567 0.94435 1.21758 0.94636 1.00539 0.99059 1.20877 0.96008 0.99357 0.91294 0.90440 1.21892 1.03008 1.00354 0.92872 1.20713 0.79358 0.85875 0.84579 1.90672 1.39742 1.24631 1.86589 1.45985 1.57841 1.27842 1.06115 1.21546 1.00362 0.95671 0.83773 1.20691 0.97100 0.94518 0.85480 1.42206 1.67720 1.27491 1.01340 1.19997 1.33772 1.08176 0.84757 0.91630 1.25855 0.99268 0.96517 1.02526 1.70880 1.40547 1.21858 1.25322 0.83214 0.75432 0.74903 0.75161 1.20931 1.22180 1.22187 0.92326 0.92756 0.92608 0.91908 0.92956 0.92550 0.92024 0.92202 0.92463 0.91860 0.92074 0.92355 0.92451 0.89877 0.88754 0.88874 0.76748 0.91544 0.91541 0.95750 0.95750 0.79753 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.13 37.16 0.30 -0.72 16 2 C -0.06 -0.46 0.54 -154.51 -0.08 -0.54 16 3 C -0.15 -1.02 7.43 37.16 0.28 -0.74 16 4 C -0.11 -0.79 4.73 -26.73 -0.13 -0.92 16 5 C -0.12 -0.94 5.65 -26.73 -0.15 -1.09 16 6 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 7 C -0.12 -1.29 4.67 -26.73 -0.12 -1.41 16 8 C -0.06 -0.55 1.14 -90.62 -0.10 -0.65 16 9 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 10 C -0.14 -1.33 4.45 -27.89 -0.12 -1.46 16 11 C 0.51 6.94 7.55 -10.99 -0.08 6.86 16 12 O -0.54 -9.42 13.96 5.55 0.08 -9.35 16 13 N -0.73 -9.83 5.56 -60.29 -0.33 -10.17 16 14 C 0.11 1.92 5.79 -4.04 -0.02 1.89 16 15 C 0.15 3.01 6.37 -4.04 -0.03 2.98 16 16 N -0.74 -19.10 5.60 -59.91 -0.34 -19.44 16 17 C -0.34 -9.62 9.99 -15.06 -0.15 -9.77 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 20 N -0.94 -29.55 13.70 55.49 0.76 -28.79 16 21 Si 1.08 25.97 29.92 -169.99 -5.09 20.88 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H 0.06 0.38 6.32 -51.93 -0.33 0.06 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.45 4.81 -51.93 -0.25 0.20 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.37 6.55 -51.93 -0.34 0.03 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 38 H 0.08 1.13 5.95 -51.93 -0.31 0.82 16 39 H 0.09 0.74 6.17 -51.93 -0.32 0.42 16 40 H 0.09 0.74 6.71 -51.93 -0.35 0.39 16 41 H 0.40 4.25 8.47 -40.82 -0.35 3.90 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.37 9.77 6.50 -40.82 -0.27 9.51 16 47 H 0.26 7.94 6.77 -40.82 -0.28 7.66 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -33.33 352.54 -8.42 -41.75 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -8.14 Total: 7.99 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -0.67 Total: -8.20 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.09 Total: -58.40 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.09 Total: 20.88 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.33 -8.42 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153836757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.010 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds