Wall clock time and date at job start Tue Mar 31 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46490 * 109.47264 * 2 1 4 4 C 1.36936 * 120.00380 * 274.92985 * 3 2 1 5 5 H 1.08002 * 119.99851 * 32.86755 * 4 3 2 6 6 C 1.38810 * 120.00025 * 212.87298 * 4 3 2 7 7 N 1.31617 * 120.00393 * 13.54523 * 6 4 3 8 8 Si 1.86807 * 119.99842 * 193.54785 * 6 4 3 9 9 H 1.48496 * 109.46906 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47137 * 119.99951 * 8 6 4 11 11 H 1.48503 * 109.46852 * 239.99697 * 8 6 4 12 12 C 1.46508 * 119.99772 * 94.92903 * 3 2 1 13 13 H 1.09003 * 109.46622 * 176.80923 * 12 3 2 14 14 C 1.53001 * 109.47064 * 56.80800 * 12 3 2 15 15 C 1.53002 * 109.46934 * 296.80564 * 12 3 2 16 16 N 1.46493 * 109.47277 * 305.00195 * 15 12 3 17 17 C 1.34779 * 119.99986 * 180.02562 * 16 15 12 18 18 O 1.21282 * 119.99786 * 354.79018 * 17 16 15 19 19 C 1.50697 * 120.00348 * 174.78512 * 17 16 15 20 20 C 1.52997 * 112.90861 * 313.91483 * 19 17 16 21 21 C 1.52997 * 109.47255 * 291.80011 * 20 19 17 22 22 C 1.53779 * 113.61676 * 182.66009 * 19 17 16 23 23 C 1.53784 * 87.08011 * 220.02154 * 22 19 17 24 24 C 1.53777 * 87.08204 * 25.43185 * 23 22 19 25 25 H 1.08999 * 109.47251 * 300.00064 * 1 2 3 26 26 H 1.09008 * 109.46842 * 60.00223 * 1 2 3 27 27 H 1.09004 * 109.47307 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46742 * 239.99975 * 2 1 3 29 29 H 1.09003 * 109.46746 * 120.00506 * 2 1 3 30 30 H 0.96999 * 120.00253 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.46882 * 60.00066 * 14 12 3 32 32 H 1.09000 * 109.46586 * 179.97438 * 14 12 3 33 33 H 1.08998 * 109.46900 * 299.99982 * 14 12 3 34 34 H 1.08998 * 109.46875 * 184.99877 * 15 12 3 35 35 H 1.09005 * 109.47184 * 65.00364 * 15 12 3 36 36 H 0.97003 * 120.00375 * 359.97438 * 16 15 12 37 37 H 1.09003 * 109.47472 * 51.79804 * 20 19 17 38 38 H 1.08995 * 109.47507 * 171.79928 * 20 19 17 39 39 H 1.09005 * 109.46983 * 302.51997 * 21 20 19 40 40 H 1.09006 * 109.47343 * 62.51149 * 21 20 19 41 41 H 1.08998 * 109.47494 * 182.51546 * 21 20 19 42 42 H 1.09000 * 113.61505 * 105.47403 * 22 19 17 43 43 H 1.08998 * 113.61316 * 334.56464 * 22 19 17 44 44 H 1.08999 * 113.61512 * 139.98118 * 23 22 19 45 45 H 1.09003 * 113.61540 * 270.88093 * 23 22 19 46 46 H 1.09006 * 113.61281 * 89.11917 * 24 23 22 47 47 H 1.09006 * 113.61564 * 220.02025 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1506 2.0607 -1.1815 5 1 1.4673 1.8671 -1.9951 6 6 3.1628 2.9983 -1.3334 7 7 4.1487 3.0493 -0.4629 8 14 3.1258 4.1878 -2.7733 9 1 1.9214 3.9252 -3.6013 10 1 3.0820 5.5816 -2.2629 11 1 4.3449 4.0016 -3.6006 12 6 2.3653 2.0354 1.2641 13 1 2.7598 3.0311 1.0615 14 6 3.4240 1.2061 1.9938 15 6 1.1152 2.1502 2.1388 16 7 0.0598 2.8411 1.3939 17 6 -1.1397 3.0576 1.9691 18 8 -1.3778 2.5988 3.0662 19 6 -2.1850 3.8699 1.2490 20 6 -1.6254 5.1594 0.6449 21 6 -1.2286 6.1189 1.7686 22 6 -3.4719 4.0796 2.0644 23 6 -4.2447 3.8633 0.7525 24 6 -3.0351 3.0476 0.2663 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.8559 3.7047 -0.5688 31 1 4.3145 1.1243 1.3706 32 1 3.6824 1.6931 2.9341 33 1 3.0295 0.2104 2.1963 34 1 1.3532 2.7150 3.0402 35 1 0.7721 1.1531 2.4149 36 1 0.2245 3.1433 0.4870 37 1 -0.7492 4.9267 0.0396 38 1 -2.3854 5.6272 0.0191 39 1 -2.0947 6.3164 2.4003 40 1 -0.4369 5.6692 2.3678 41 1 -0.8717 7.0546 1.3383 42 1 -3.5729 5.0863 2.4697 43 1 -3.6488 3.3029 2.8083 44 1 -5.1514 3.2704 0.8725 45 1 -4.4091 4.7801 0.1863 46 1 -3.0926 1.9887 0.5187 47 1 -2.7834 3.2212 -0.7800 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154712022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:16 Heat of formation + Delta-G solvation = -13.617347 kcal Electronic energy + Delta-G solvation = -24627.272674 eV Core-core repulsion = 21424.848067 eV Total energy + Delta-G solvation = -3202.424608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.39465 -37.79551 -36.58698 -33.64748 -32.24849 -31.86895 -30.90996 -28.20116 -26.93593 -25.50937 -24.70047 -23.93089 -22.65637 -21.67524 -20.41108 -19.25792 -18.07808 -17.03502 -16.64606 -15.55835 -15.26712 -15.07847 -14.62996 -14.27775 -13.80028 -13.73196 -13.41039 -13.11710 -12.66315 -12.53863 -12.32988 -12.28090 -11.98940 -11.82159 -11.56352 -11.48463 -11.28529 -11.16056 -11.05682 -10.96179 -10.83496 -10.79642 -10.64904 -10.27160 -10.25479 -10.09088 -10.01054 -9.61922 -9.44966 -9.04476 -8.53169 -8.25825 -6.66054 -5.87443 -3.38587 3.17258 3.28508 3.38463 3.38878 3.90346 4.40235 4.58111 4.64972 4.83039 4.86653 5.25560 5.27794 5.36496 5.40134 5.50326 5.60195 5.71021 5.88309 5.89340 5.93725 5.97136 5.99529 6.08158 6.08902 6.17631 6.24363 6.29971 6.36247 6.38834 6.41458 6.50971 6.53470 6.56538 6.66460 6.70000 6.84605 6.92561 7.16985 7.19602 7.50603 7.63255 7.73906 8.30886 8.44078 8.88563 9.16193 9.77530 10.33981 11.17846 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015128 B = 0.006761 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.397989 B = 4140.176082 C = 4794.394147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.139 3.861 3 N -0.582 5.582 4 C -0.256 4.256 5 H 0.064 0.936 6 C 0.008 3.992 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.290 1.290 12 C 0.169 3.831 13 H 0.111 0.889 14 C -0.142 4.142 15 C 0.101 3.899 16 N -0.697 5.697 17 C 0.522 3.478 18 O -0.563 6.563 19 C -0.105 4.105 20 C -0.099 4.099 21 C -0.152 4.152 22 C -0.114 4.114 23 C -0.141 4.141 24 C -0.120 4.120 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.031 0.969 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.254 0.746 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.411 0.589 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.821 2.668 2.149 11.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 N -0.303 5.303 4 C -0.386 4.386 5 H 0.082 0.918 6 C -0.191 4.191 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.062 3.938 13 H 0.128 0.872 14 C -0.201 4.201 15 C -0.024 4.024 16 N -0.347 5.347 17 C 0.308 3.692 18 O -0.443 6.443 19 C -0.108 4.108 20 C -0.137 4.137 21 C -0.209 4.209 22 C -0.152 4.152 23 C -0.178 4.178 24 C -0.158 4.158 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.248 0.752 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.783 2.449 2.907 11.434 hybrid contribution 0.266 0.690 -1.177 1.390 sum -10.518 3.138 1.730 11.111 Atomic orbital electron populations 1.22434 1.00031 0.98869 1.01517 1.20768 0.91688 0.87522 0.98709 1.43870 1.76033 1.08238 1.02166 1.19161 1.08962 1.17869 0.92609 0.91820 1.25158 0.94844 1.01419 0.97696 1.69951 1.10715 1.36210 1.36847 0.86325 0.77612 0.81042 0.82423 1.20197 1.21541 1.21700 1.20640 0.89035 0.99982 0.84156 0.87162 1.21973 1.01074 0.98105 0.98969 1.22153 0.89779 0.95607 0.94898 1.45963 1.12067 1.57803 1.18902 1.20239 0.82830 0.80353 0.85798 1.90611 1.79878 1.52436 1.21392 1.22138 0.93989 0.96423 0.98254 1.21320 1.01185 0.93196 0.98005 1.21762 1.01516 0.98992 0.98614 1.22862 0.93217 1.02547 0.96561 1.22828 0.97162 1.00226 0.97599 1.22869 0.95130 0.99022 0.98739 0.92967 0.93509 0.94962 0.94161 0.94475 0.93591 0.90945 0.94738 0.95123 0.93404 0.93136 0.75240 0.90750 0.91142 0.92607 0.92532 0.92518 0.91221 0.88986 0.91436 0.90150 0.89841 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.93 37.16 0.37 -2.72 16 2 C 0.14 2.83 5.79 -4.05 -0.02 2.80 16 3 N -0.58 -13.01 1.90 -165.66 -0.32 -13.32 16 4 C -0.26 -6.29 9.09 -15.06 -0.14 -6.42 16 5 H 0.06 1.58 7.87 -52.49 -0.41 1.17 16 6 C 0.01 0.21 4.98 -17.43 -0.09 0.12 16 7 N -0.89 -23.52 10.70 55.49 0.59 -22.92 16 8 Si 0.90 20.10 29.58 -169.99 -5.03 15.07 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.17 3.64 1.95 -67.92 -0.13 3.51 16 13 H 0.11 2.71 5.69 -51.93 -0.30 2.41 16 14 C -0.14 -2.91 9.04 37.16 0.34 -2.57 16 15 C 0.10 2.00 4.36 -4.04 -0.02 1.98 16 16 N -0.70 -12.93 4.15 -60.30 -0.25 -13.18 16 17 C 0.52 9.37 6.31 -10.99 -0.07 9.30 16 18 O -0.56 -11.82 15.89 5.56 0.09 -11.73 16 19 C -0.10 -1.49 0.84 -154.85 -0.13 -1.62 16 20 C -0.10 -1.29 5.19 -26.73 -0.14 -1.43 16 21 C -0.15 -1.93 9.62 37.16 0.36 -1.57 16 22 C -0.11 -1.47 6.82 -25.92 -0.18 -1.64 16 23 C -0.14 -1.52 7.73 -25.92 -0.20 -1.72 16 24 C -0.12 -1.54 7.20 -25.92 -0.19 -1.72 16 25 H 0.05 1.00 5.26 -51.93 -0.27 0.72 16 26 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 29 H 0.04 0.73 6.27 -51.93 -0.33 0.40 16 30 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.07 1.66 7.81 -51.93 -0.41 1.26 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.58 6.55 -51.93 -0.34 0.24 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 1.03 6.89 -51.93 -0.36 0.68 16 36 H 0.41 7.86 6.64 -40.82 -0.27 7.59 16 37 H 0.07 1.06 7.06 -51.93 -0.37 0.69 16 38 H 0.07 0.78 7.32 -51.93 -0.38 0.40 16 39 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 40 H 0.06 0.83 7.74 -51.93 -0.40 0.43 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.82 6.55 -51.93 -0.34 0.48 16 43 H 0.09 1.33 7.40 -51.93 -0.38 0.94 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.77 7.63 -51.93 -0.40 0.37 16 46 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 47 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 357.05 15.07 5.38 5.38 Total: -1.00 -26.85 357.05 -7.99 -34.84 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -8.22 Total: 9.58 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -0.24 Total: -3.71 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.03 Total: -49.43 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -26.85 -7.99 -34.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154712022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.222 kcal (2) G-P(sol) polarization free energy of solvation -26.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds