Wall clock time and date at job start Tue Mar 31 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47480 * 2 1 4 4 C 1.50699 * 109.47258 * 239.99450 * 2 1 3 5 5 O 1.21276 * 120.00588 * 240.00482 * 4 2 1 6 6 N 1.34776 * 119.99541 * 60.00317 * 4 2 1 7 7 C 1.46506 * 119.99834 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.46934 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.46787 * 179.97438 * 8 7 6 10 10 N 1.46504 * 109.46771 * 179.97438 * 9 8 7 11 11 C 1.36944 * 119.99662 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00038 * 0.02562 * 11 10 9 13 13 C 1.38818 * 119.99761 * 179.97438 * 11 10 9 14 14 N 1.31612 * 119.99977 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99663 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46952 * 90.00581 * 15 13 11 17 17 H 1.48500 * 109.46949 * 209.99558 * 15 13 11 18 18 H 1.48492 * 109.47566 * 330.00098 * 15 13 11 19 19 C 1.53004 * 109.46983 * 120.00041 * 2 1 3 20 20 C 1.54270 * 110.48468 * 299.99973 * 19 2 1 21 21 C 1.53869 * 106.63967 * 217.73631 * 20 19 2 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 C 1.54895 * 104.19476 * 23.60777 * 22 21 20 24 24 H 1.08999 * 109.47149 * 300.00047 * 1 2 3 25 25 H 1.09002 * 109.47271 * 60.00104 * 1 2 3 26 26 H 1.08999 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47059 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46784 * 300.00194 * 3 2 1 29 29 H 1.08999 * 109.46968 * 59.99842 * 3 2 1 30 30 H 0.97001 * 120.00467 * 359.97438 * 6 4 2 31 31 H 1.08998 * 109.46986 * 299.99394 * 7 6 4 32 32 H 1.08996 * 109.47194 * 59.99822 * 7 6 4 33 33 H 1.08996 * 109.47304 * 300.00005 * 8 7 6 34 34 H 1.09007 * 109.46905 * 60.00079 * 8 7 6 35 35 H 1.09004 * 109.47436 * 299.99855 * 9 8 7 36 36 H 1.08999 * 109.47453 * 60.00277 * 9 8 7 37 37 H 0.96992 * 119.99998 * 0.02562 * 10 9 8 38 38 H 0.96998 * 120.00441 * 179.97438 * 14 13 11 39 39 H 1.08997 * 110.53944 * 62.61063 * 19 2 1 40 40 H 1.09002 * 110.03399 * 98.42629 * 20 19 2 41 41 H 1.08995 * 110.02943 * 337.04529 * 20 19 2 42 42 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 43 43 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 44 44 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 45 45 H 1.09001 * 110.48482 * 264.93365 * 22 21 20 46 46 H 1.09001 * 110.75082 * 80.37254 * 23 22 21 47 47 H 1.08991 * 110.75596 * 203.55944 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1191 6 7 1.7068 -0.2501 -2.4545 7 6 2.1946 -0.9411 -3.6507 8 6 1.6853 -0.2194 -4.8999 9 6 2.1953 -0.9407 -6.1491 10 7 1.7071 -0.2500 -7.3453 11 6 2.0384 -0.7176 -8.5891 12 1 2.6593 -1.5957 -8.6881 13 6 1.5754 -0.0634 -9.7225 14 7 0.8184 1.0064 -9.6018 15 14 2.0268 -0.7017 -11.4190 16 1 1.0034 -1.6795 -11.8685 17 1 2.0816 0.4324 -12.3761 18 1 3.3539 -1.3654 -11.3614 19 6 2.0399 -0.7213 1.2493 20 6 1.5386 -0.0123 2.5244 21 6 2.6886 -0.0758 3.5448 22 6 3.8493 -0.8219 2.8550 23 6 3.5836 -0.6219 1.3422 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.1488 0.5384 -2.5436 31 1 3.2846 -0.9415 -3.6508 32 1 1.8309 -1.9686 -3.6505 33 1 0.5953 -0.2185 -4.9000 34 1 2.0495 0.8081 -4.8999 35 1 3.2854 -0.9411 -6.1488 36 1 1.8315 -1.9682 -6.1494 37 1 1.1498 0.5389 -7.2563 38 1 0.4951 1.4638 -10.3937 39 1 1.7247 -1.7647 1.2439 40 1 0.6618 -0.5269 2.9175 41 1 1.2934 1.0262 2.3023 42 1 3.0020 0.9319 3.8174 43 1 2.3696 -0.6204 4.4336 44 1 4.8061 -0.3817 3.1357 45 1 3.8265 -1.8815 3.1095 46 1 3.9271 0.3599 1.0162 47 1 4.0602 -1.4096 0.7588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160070014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:35 Heat of formation + Delta-G solvation = -58.674000 kcal Electronic energy + Delta-G solvation = -22429.714980 eV Core-core repulsion = 19225.336570 eV Total energy + Delta-G solvation = -3204.378411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.69668 -38.23377 -35.96871 -34.77523 -34.16258 -31.86649 -29.54639 -29.06934 -27.84691 -27.57383 -25.46630 -23.67243 -22.41443 -21.18420 -20.78278 -20.32320 -18.67488 -17.27375 -16.87590 -16.28168 -15.64592 -15.62716 -15.18463 -14.63501 -14.53814 -14.16573 -13.92818 -13.68388 -13.27290 -13.19444 -12.99238 -12.59500 -12.40123 -12.23402 -12.07092 -11.68027 -11.66255 -11.36525 -11.20258 -11.14070 -10.94191 -10.91269 -10.79150 -10.68222 -10.60750 -10.53995 -10.50724 -10.08126 -9.74611 -9.53358 -8.98708 -8.88157 -6.93829 -5.77600 -3.06462 2.66693 3.17625 3.43808 3.48888 3.50710 4.24650 4.33445 4.43076 4.58953 4.67625 4.75093 4.77940 4.99131 5.16416 5.19969 5.29391 5.30916 5.33423 5.38003 5.44402 5.45757 5.54208 5.57380 5.59888 5.62300 5.64816 5.73236 5.79548 5.82804 5.90226 5.96756 6.02948 6.07698 6.11572 6.19268 6.22910 6.31765 6.32560 6.51729 6.79099 6.83395 7.53034 7.69921 8.25355 8.41452 9.52521 10.09690 10.44441 11.45466 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046423 B = 0.002445 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.008916 B =11450.717143 C =11728.149396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 C -0.147 4.147 4 C 0.520 3.480 5 O -0.538 6.538 6 N -0.727 5.727 7 C 0.122 3.878 8 C -0.137 4.137 9 C 0.156 3.844 10 N -0.734 5.734 11 C -0.240 4.240 12 H 0.071 0.929 13 C -0.015 4.015 14 N -0.935 5.935 15 Si 0.909 3.091 16 H -0.289 1.289 17 H -0.291 1.291 18 H -0.281 1.281 19 C -0.065 4.065 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.123 4.123 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.399 0.601 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 0.975 27.328 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 C -0.204 4.204 4 C 0.306 3.694 5 O -0.415 6.415 6 N -0.378 5.378 7 C -0.001 4.001 8 C -0.175 4.175 9 C 0.028 3.972 10 N -0.378 5.378 11 C -0.371 4.371 12 H 0.089 0.911 13 C -0.211 4.211 14 N -0.584 5.584 15 Si 0.740 3.260 16 H -0.217 1.217 17 H -0.217 1.217 18 H -0.207 1.207 19 C -0.083 4.083 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.163 4.163 23 C -0.160 4.160 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.109 0.154 27.255 27.278 hybrid contribution -0.313 0.347 -1.087 1.184 sum 0.795 0.501 26.168 26.184 Atomic orbital electron populations 1.21888 0.92572 1.02749 1.02751 1.20785 0.97015 0.96584 0.93460 1.22032 1.02091 0.93613 1.02683 1.20496 0.80040 0.84421 0.84444 1.90671 1.37764 1.26323 1.86757 1.46104 1.53699 1.32133 1.05868 1.21342 0.99366 0.96374 0.83050 1.21940 1.01447 1.00252 0.93903 1.20521 0.96453 0.94731 0.85468 1.42343 1.61548 1.33430 1.00496 1.19251 1.25641 1.08680 0.83500 0.91097 1.24757 1.00493 0.97942 0.97928 1.69655 1.39401 1.20891 1.28404 0.86160 0.77978 0.77621 0.84276 1.21686 1.21749 1.20715 1.21766 0.95818 0.99234 0.91532 1.22324 0.97999 1.00938 0.94853 1.22120 0.95624 1.00334 0.98073 1.22362 0.97911 1.00255 0.95810 1.22703 0.95193 1.02449 0.95668 0.91262 0.92024 0.92052 0.91502 0.92078 0.91087 0.76675 0.91473 0.91479 0.91360 0.91359 0.96076 0.96084 0.78313 0.93507 0.90232 0.91992 0.91205 0.92078 0.92189 0.91992 0.91834 0.91440 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.14 37.16 0.30 -0.76 16 2 C -0.08 -0.67 0.42 -155.66 -0.07 -0.74 16 3 C -0.15 -1.10 7.76 37.16 0.29 -0.82 16 4 C 0.52 6.45 6.26 -10.99 -0.07 6.38 16 5 O -0.54 -8.60 14.44 5.56 0.08 -8.52 16 6 N -0.73 -8.46 5.34 -60.29 -0.32 -8.78 16 7 C 0.12 1.69 5.67 -4.04 -0.02 1.67 16 8 C -0.14 -2.11 5.44 -26.73 -0.15 -2.26 16 9 C 0.16 3.15 6.26 -4.04 -0.03 3.13 16 10 N -0.73 -18.81 5.60 -59.90 -0.34 -19.15 16 11 C -0.24 -6.81 9.99 -15.05 -0.15 -6.96 16 12 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 13 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 14 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 15 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C -0.06 -0.59 1.81 -88.92 -0.16 -0.75 16 20 C -0.12 -0.88 5.14 -25.61 -0.13 -1.01 16 21 C -0.12 -0.87 6.80 -25.62 -0.17 -1.04 16 22 C -0.13 -1.02 6.83 -25.07 -0.17 -1.19 16 23 C -0.12 -1.20 5.46 -24.70 -0.13 -1.34 16 24 H 0.07 0.42 7.08 -51.93 -0.37 0.05 16 25 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.55 6.02 -51.93 -0.31 0.24 16 28 H 0.06 0.42 7.57 -51.93 -0.39 0.03 16 29 H 0.07 0.44 6.12 -51.93 -0.32 0.12 16 30 H 0.40 3.77 7.31 -40.82 -0.30 3.47 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.44 5.48 -51.93 -0.28 0.16 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.64 5.64 -51.93 -0.29 0.34 16 47 H 0.08 0.96 7.00 -51.93 -0.36 0.60 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -32.29 360.15 -8.58 -40.87 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -8.37 Total: 6.53 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -0.76 Total: -6.25 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.07 Total: -55.62 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.08 Total: -8.52 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.29 -8.58 -40.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160070014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.806 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds