Wall clock time and date at job start Tue Mar 31 2020 06:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47182 * 2 1 4 4 C 1.53006 * 109.47026 * 239.99832 * 2 1 3 5 5 C 1.52997 * 109.47059 * 120.00162 * 2 1 3 6 6 C 1.50700 * 109.47074 * 59.99766 * 5 2 1 7 7 O 1.21280 * 120.00248 * 0.02562 * 6 5 2 8 8 N 1.34784 * 119.99722 * 179.97438 * 6 5 2 9 9 C 1.46498 * 119.99915 * 180.27613 * 8 6 5 10 10 C 1.52999 * 109.47509 * 179.72898 * 9 8 6 11 11 C 1.52993 * 109.47306 * 175.02387 * 10 9 8 12 12 C 1.52994 * 115.55361 * 278.02797 * 11 10 9 13 13 N 1.46498 * 109.47311 * 303.90426 * 12 11 10 14 14 C 1.36932 * 120.00133 * 175.58918 * 13 12 11 15 15 H 1.08002 * 120.00228 * 359.97438 * 14 13 12 16 16 C 1.38815 * 120.00374 * 179.97438 * 14 13 12 17 17 N 1.31623 * 119.99461 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00518 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46908 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47031 * 119.99759 * 18 16 14 21 21 H 1.48502 * 109.47021 * 240.00103 * 18 16 14 22 22 C 1.53007 * 117.49511 * 132.32265 * 11 10 9 23 23 C 1.53001 * 60.00079 * 252.50859 * 22 11 10 24 24 H 1.08995 * 109.47048 * 300.00102 * 1 2 3 25 25 H 1.09001 * 109.46981 * 60.00026 * 1 2 3 26 26 H 1.09001 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46678 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47119 * 300.00422 * 3 2 1 29 29 H 1.09000 * 109.46518 * 59.99875 * 3 2 1 30 30 H 1.09002 * 109.46973 * 300.00382 * 4 2 1 31 31 H 1.08999 * 109.46689 * 59.99936 * 4 2 1 32 32 H 1.08990 * 109.46887 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.46927 * 300.00074 * 5 2 1 34 34 H 1.09003 * 109.47240 * 180.02562 * 5 2 1 35 35 H 0.96993 * 119.99936 * 0.02562 * 8 6 5 36 36 H 1.09007 * 109.47341 * 299.72879 * 9 8 6 37 37 H 1.09004 * 109.46896 * 59.72436 * 9 8 6 38 38 H 1.09006 * 109.46303 * 295.02368 * 10 9 8 39 39 H 1.08996 * 109.47109 * 55.01910 * 10 9 8 40 40 H 1.09004 * 109.46723 * 63.90248 * 12 11 10 41 41 H 1.08994 * 109.47478 * 183.89959 * 12 11 10 42 42 H 0.97001 * 119.99661 * 355.59221 * 13 12 11 43 43 H 0.97009 * 120.00052 * 180.02562 * 17 16 14 44 44 H 1.08991 * 117.49896 * 0.02562 * 22 11 10 45 45 H 1.09005 * 117.49414 * 145.01762 * 22 11 10 46 46 H 1.08996 * 117.49992 * 252.50878 * 23 22 11 47 47 H 1.09004 * 117.49813 * 107.49126 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5376 -2.1421 1.2492 7 8 0.8407 -2.5389 0.3394 8 7 1.8637 -2.9721 2.2598 9 6 1.3803 -4.3551 2.2568 10 6 1.8953 -5.0781 3.5029 11 6 1.2909 -6.4823 3.5641 12 6 -0.1219 -6.5679 4.1452 13 7 -0.1355 -5.9758 5.4851 14 6 -1.3157 -5.8569 6.1692 15 1 -2.2367 -6.1992 5.7207 16 6 -1.3286 -5.2963 7.4390 17 7 -0.2063 -4.8787 7.9854 18 14 -2.9387 -5.1334 8.3719 19 1 -4.0472 -5.6731 7.5441 20 1 -2.8538 -5.8967 9.6428 21 1 -3.1951 -3.7015 8.6705 22 6 2.2412 -7.6489 3.8414 23 6 1.6534 -7.4571 2.4419 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2495 33 1 1.6767 -0.2074 2.1392 34 1 3.1301 -0.7209 1.2495 35 1 2.4213 -2.6549 2.9872 36 1 0.2903 -4.3590 2.2589 37 1 1.7437 -4.8650 1.3645 38 1 2.9819 -5.1519 3.4570 39 1 1.6063 -4.5190 4.3928 40 1 -0.8132 -6.0247 3.5009 41 1 -0.4269 -7.6125 4.2064 42 1 0.6916 -5.6680 5.8877 43 1 -0.2152 -4.4873 8.8729 44 1 3.2968 -7.4160 3.9806 45 1 1.8599 -8.4777 4.4381 46 1 0.8856 -8.1595 2.1178 47 1 2.3225 -7.0979 1.6599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163447224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:40 Heat of formation + Delta-G solvation = -25.364342 kcal Electronic energy + Delta-G solvation = -22616.342171 eV Core-core repulsion = 19413.408175 eV Total energy + Delta-G solvation = -3202.933995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11654 -38.37244 -36.67720 -34.64001 -33.93567 -30.82213 -30.43203 -28.00697 -27.27985 -27.20874 -25.91907 -23.33913 -22.72188 -21.83131 -20.67061 -19.12031 -18.39749 -17.12621 -16.82922 -15.82655 -15.70844 -15.16452 -14.67447 -14.48948 -14.39552 -14.27948 -14.09690 -13.47817 -13.12697 -12.81841 -12.68207 -12.37455 -12.22530 -12.17803 -11.84597 -11.83411 -11.56689 -11.27287 -11.15611 -11.08134 -10.90237 -10.85961 -10.82906 -10.72575 -10.53045 -10.11978 -9.91768 -9.66566 -9.41119 -9.29991 -8.88761 -8.82716 -6.90080 -5.76622 -3.04173 2.73168 3.28367 3.43383 3.49562 3.51418 4.06587 4.55549 4.61261 4.71670 4.73165 5.03624 5.07553 5.13941 5.19211 5.33676 5.36580 5.39716 5.45272 5.52223 5.56139 5.62586 5.68047 5.71142 5.78455 5.79524 5.83849 5.91356 6.01393 6.04602 6.14501 6.17187 6.20172 6.23231 6.40885 6.43621 6.45352 6.46740 6.59502 6.69547 6.77773 6.84602 7.61047 7.71422 8.35380 8.42705 9.54428 10.12566 10.48259 11.46388 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014383 B = 0.003814 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.340425 B = 7339.688886 C = 8686.968596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.153 4.153 5 C -0.134 4.134 6 C 0.512 3.488 7 O -0.535 6.535 8 N -0.729 5.729 9 C 0.126 3.874 10 C -0.092 4.092 11 C -0.118 4.118 12 C 0.188 3.812 13 N -0.728 5.728 14 C -0.236 4.236 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.905 3.095 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.167 4.167 23 C -0.177 4.177 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.026 0.974 41 H 0.017 0.983 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.957 7.035 -15.164 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.051 4.051 3 C -0.199 4.199 4 C -0.210 4.210 5 C -0.174 4.174 6 C 0.299 3.701 7 O -0.413 6.413 8 N -0.380 5.380 9 C 0.003 3.997 10 C -0.130 4.130 11 C -0.119 4.119 12 C 0.061 3.939 13 N -0.372 5.372 14 C -0.368 4.368 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.204 4.204 23 C -0.215 4.215 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.234 0.766 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.043 0.957 41 H 0.035 0.965 42 H 0.218 0.782 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.260 6.727 -15.777 19.037 hybrid contribution -0.257 0.381 1.234 1.317 sum 8.003 7.108 -14.544 18.058 Atomic orbital electron populations 1.22119 0.94025 1.04309 1.00728 1.20257 0.96483 0.94335 0.94056 1.21902 1.00713 0.95478 1.01852 1.22107 0.99767 1.02997 0.96129 1.21800 1.02165 0.92927 1.00552 1.20633 0.80214 0.87614 0.81667 1.90565 1.37812 1.77333 1.35624 1.46127 1.53806 1.12798 1.25227 1.21319 1.00069 0.80222 0.98100 1.21265 0.98926 0.94441 0.98378 1.21572 0.97611 0.90434 1.02294 1.20169 0.90252 0.96010 0.87515 1.42312 1.07969 1.73353 1.13555 1.19287 0.87185 1.33078 0.97211 0.91212 1.24708 0.96912 1.01803 0.97557 1.69671 1.24805 1.47339 1.16468 0.86135 0.83073 0.77286 0.79845 1.20569 1.21911 1.21908 1.22995 0.98277 1.00655 0.98461 1.22959 1.03596 1.03111 0.91838 0.93466 0.93254 0.89610 0.92800 0.92501 0.92650 0.89675 0.93253 0.93722 0.88895 0.89167 0.76635 0.91061 0.91992 0.92098 0.89244 0.95665 0.96492 0.78156 0.93653 0.89340 0.88716 0.88964 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.18 37.16 0.30 -1.48 16 2 C -0.05 -0.51 0.77 -154.50 -0.12 -0.63 16 3 C -0.14 -1.16 8.47 37.16 0.31 -0.84 16 4 C -0.15 -1.62 8.18 37.16 0.30 -1.32 16 5 C -0.13 -1.32 4.77 -27.88 -0.13 -1.45 16 6 C 0.51 6.66 7.24 -10.98 -0.08 6.58 16 7 O -0.54 -8.55 11.35 5.56 0.06 -8.48 16 8 N -0.73 -9.10 5.56 -60.29 -0.33 -9.43 16 9 C 0.13 1.80 5.49 -4.04 -0.02 1.78 16 10 C -0.09 -1.35 5.20 -26.73 -0.14 -1.49 16 11 C -0.12 -1.89 1.65 -154.51 -0.25 -2.14 16 12 C 0.19 3.81 6.15 -4.05 -0.02 3.79 16 13 N -0.73 -18.16 5.23 -59.91 -0.31 -18.48 16 14 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 17 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 18 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 C -0.17 -2.42 9.87 -26.73 -0.26 -2.68 16 23 C -0.18 -2.37 9.58 -26.73 -0.26 -2.62 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.09 1.21 5.51 -51.93 -0.29 0.92 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.11 5.51 -51.93 -0.29 0.82 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.40 4.12 8.47 -40.82 -0.35 3.77 16 36 H 0.07 1.20 7.96 -51.92 -0.41 0.79 16 37 H 0.06 0.86 7.72 -51.93 -0.40 0.46 16 38 H 0.06 0.77 7.93 -51.93 -0.41 0.36 16 39 H 0.09 1.55 6.94 -51.93 -0.36 1.19 16 40 H 0.03 0.53 7.96 -51.93 -0.41 0.12 16 41 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 42 H 0.38 9.99 6.80 -40.82 -0.28 9.71 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.09 1.16 8.07 -51.93 -0.42 0.74 16 45 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 46 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -31.14 371.67 -8.54 -39.68 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -8.64 Total: 10.61 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -0.61 Total: -9.77 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.08 Total: -55.06 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.06 Total: -8.48 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.14 -8.54 -39.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163447224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.311 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds