Wall clock time and date at job start Tue Mar 31 2020 05:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 115.54893 * 2 1 4 4 C 1.50706 * 109.46922 * 279.64008 * 3 2 1 5 5 O 1.21283 * 120.00206 * 5.53958 * 4 3 2 6 6 N 1.34774 * 120.00051 * 185.54252 * 4 3 2 7 7 C 1.46501 * 120.00019 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.46908 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.46619 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46619 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.46619 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.46619 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.46908 * 180.02562 * 12 11 10 14 14 C 1.36939 * 120.00026 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99827 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00178 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00489 * 179.97438 * 16 14 13 18 18 Si 1.86810 * 119.99760 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46836 * 90.00258 * 18 16 14 20 20 H 1.48495 * 109.47051 * 209.99536 * 18 16 14 21 21 H 1.48495 * 109.47366 * 330.00267 * 18 16 14 22 22 C 1.52996 * 117.51663 * 145.69462 * 2 1 3 23 23 C 1.52992 * 117.49972 * 214.32623 * 2 1 3 24 24 H 1.09001 * 109.46767 * 65.00525 * 1 2 3 25 25 H 1.08999 * 109.46743 * 185.00024 * 1 2 3 26 26 H 1.09002 * 109.47358 * 305.00056 * 1 2 3 27 27 H 1.09002 * 109.47563 * 159.64128 * 3 2 1 28 28 H 1.09007 * 109.47391 * 39.63515 * 3 2 1 29 29 H 0.97002 * 119.99734 * 359.97438 * 6 4 3 30 30 H 1.08999 * 109.47164 * 299.99890 * 7 6 4 31 31 H 1.09003 * 109.46732 * 60.00150 * 7 6 4 32 32 H 1.08999 * 109.47467 * 300.00131 * 8 7 6 33 33 H 1.09001 * 109.46442 * 60.00636 * 8 7 6 34 34 H 1.08999 * 109.47568 * 300.00387 * 9 8 7 35 35 H 1.09003 * 109.46617 * 60.00823 * 9 8 7 36 36 H 1.08999 * 109.47467 * 300.00448 * 10 9 8 37 37 H 1.09003 * 109.46954 * 60.01030 * 10 9 8 38 38 H 1.08999 * 109.47568 * 300.00387 * 11 10 9 39 39 H 1.09001 * 109.46935 * 60.01255 * 11 10 9 40 40 H 1.08999 * 109.47467 * 300.00448 * 12 11 10 41 41 H 1.09003 * 109.46954 * 60.01030 * 12 11 10 42 42 H 0.97002 * 120.00247 * 0.02562 * 13 12 11 43 43 H 0.96995 * 120.00028 * 179.97438 * 17 16 14 44 44 H 1.08996 * 117.50144 * 214.96765 * 22 2 1 45 45 H 1.08997 * 117.50266 * 359.97438 * 22 2 1 46 46 H 1.09007 * 117.50135 * 359.97438 * 23 2 1 47 47 H 1.09006 * 117.49909 * 145.00023 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.1918 1.9362 -1.4008 5 8 1.6247 1.3388 -2.2911 6 7 2.8239 3.0970 -1.6643 7 6 2.8263 3.6370 -3.0262 8 6 3.6063 4.9530 -3.0516 9 6 3.6093 5.5166 -4.4740 10 6 4.3899 6.8323 -4.4996 11 6 4.3935 7.3955 -5.9221 12 6 5.1736 8.7116 -5.9475 13 7 5.1765 9.2513 -7.3095 14 6 5.8187 10.4307 -7.5773 15 1 6.3235 10.9627 -6.7845 16 6 5.8219 10.9418 -8.8679 17 7 6.4388 12.0756 -9.1252 18 14 4.9507 10.0203 -10.2395 19 1 3.5413 10.4800 -10.3272 20 1 5.6387 10.2851 -11.5286 21 1 4.9793 8.5635 -9.9532 22 6 2.2369 -1.1209 0.7647 23 6 2.2365 -1.1207 -0.7652 24 1 -0.3633 0.4342 -0.9314 25 1 -0.3633 -1.0238 0.0896 26 1 -0.3634 0.5895 0.8418 27 1 3.2159 1.2927 0.3575 28 1 1.6325 2.0496 0.6556 29 1 3.2772 3.5749 -0.9523 30 1 3.2978 2.9216 -3.6999 31 1 1.8003 3.8169 -3.3474 32 1 3.1344 5.6683 -2.3780 33 1 4.6323 4.7734 -2.7302 34 1 4.0815 4.8012 -5.1474 35 1 2.5834 5.6961 -4.7958 36 1 3.9182 7.5479 -3.8262 37 1 5.4158 6.6524 -4.1780 38 1 4.8655 6.6798 -6.5952 39 1 3.3678 7.5755 -6.2442 40 1 4.7011 9.4271 -5.2745 41 1 6.1993 8.5322 -5.6253 42 1 4.7234 8.7732 -8.0217 43 1 6.4413 12.4325 -10.0271 44 1 3.1721 -0.8749 1.2677 45 1 1.6120 -1.8583 1.2684 46 1 1.6112 -1.8584 -1.2684 47 1 3.1714 -0.8746 -1.2688 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179049010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:45 Heat of formation + Delta-G solvation = -34.999825 kcal Electronic energy + Delta-G solvation = -20882.710040 eV Core-core repulsion = 17679.358218 eV Total energy + Delta-G solvation = -3203.351821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.30102 -38.08717 -36.81929 -35.47860 -34.02842 -32.04244 -30.77329 -29.80923 -28.54693 -26.90315 -24.04884 -22.80252 -22.10316 -21.44817 -20.86216 -20.73457 -19.34712 -17.49053 -17.18373 -16.43010 -16.33439 -15.82903 -15.27963 -14.77265 -14.57532 -14.26250 -14.16258 -13.88444 -13.26267 -13.20753 -13.12099 -12.68880 -12.67391 -12.42660 -12.39057 -11.89122 -11.78896 -11.68092 -11.56343 -11.45378 -11.01209 -10.86155 -10.78765 -10.68918 -10.39637 -10.36931 -10.26796 -10.08160 -9.82837 -9.56445 -9.37580 -8.86558 -7.19807 -5.74662 -3.09706 2.36197 2.76924 3.39437 3.42573 3.46451 3.46913 4.17760 4.32786 4.43088 4.51696 4.57040 4.61504 4.69738 4.72704 4.90524 5.01704 5.11142 5.16446 5.26251 5.26972 5.32359 5.44514 5.50041 5.50935 5.55411 5.58534 5.59310 5.63623 5.68259 5.77203 5.81695 5.87432 5.91674 6.02654 6.11408 6.12954 6.22295 6.25186 6.38617 6.79942 6.84147 7.16621 7.93714 8.02472 8.44801 9.24468 9.97100 10.17493 11.43905 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.051833 B = 0.001766 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.070769 B =15852.193247 C =16112.128673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.112 4.112 3 C -0.105 4.105 4 C 0.510 3.490 5 O -0.530 6.530 6 N -0.735 5.735 7 C 0.118 3.882 8 C -0.131 4.131 9 C -0.116 4.116 10 C -0.113 4.113 11 C -0.131 4.131 12 C 0.156 3.844 13 N -0.759 5.759 14 C -0.244 4.244 15 H 0.090 0.910 16 C 0.002 3.998 17 N -0.936 5.936 18 Si 0.886 3.114 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.178 4.178 23 C -0.157 4.157 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.400 0.600 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.025 0.975 41 H 0.024 0.976 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.748 -25.865 23.023 35.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.113 4.113 3 C -0.145 4.145 4 C 0.296 3.704 5 O -0.406 6.406 6 N -0.388 5.388 7 C -0.006 4.006 8 C -0.168 4.168 9 C -0.155 4.155 10 C -0.151 4.151 11 C -0.169 4.169 12 C 0.029 3.971 13 N -0.404 5.404 14 C -0.374 4.374 15 H 0.107 0.893 16 C -0.193 4.193 17 N -0.584 5.584 18 Si 0.716 3.284 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.215 4.215 23 C -0.194 4.194 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.233 0.767 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.031 -26.089 22.393 35.815 hybrid contribution -0.245 -0.212 -0.754 0.821 sum -10.276 -26.301 21.639 35.575 Atomic orbital electron populations 1.21303 0.91667 1.01800 1.02248 1.21038 0.95088 0.89337 1.05821 1.21231 1.02544 0.96216 0.94535 1.20668 0.78264 0.80470 0.91012 1.90713 1.43440 1.58855 1.47601 1.46110 1.56503 1.24349 1.11787 1.21417 1.01042 0.95079 0.83026 1.21824 1.00533 0.95596 0.98897 1.21521 1.01213 0.97473 0.95256 1.21492 1.00243 0.95872 0.97530 1.21785 1.00907 0.97989 0.96186 1.20640 0.96934 0.91949 0.87588 1.42748 1.66187 1.26256 1.05213 1.19094 1.26319 0.96627 0.95392 0.89269 1.24684 1.00448 0.97097 0.97081 1.69704 1.47864 1.20474 1.20329 0.86519 0.79647 0.79566 0.82656 1.21076 1.21707 1.20343 1.23184 1.02176 1.01087 0.95074 1.22884 1.02226 1.00833 0.93449 0.91400 0.92540 0.92517 0.88978 0.88317 0.76653 0.91519 0.91506 0.91251 0.91281 0.91693 0.91677 0.91894 0.91916 0.92147 0.92139 0.95704 0.95761 0.80720 0.93095 0.88878 0.88692 0.88762 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.66 37.16 0.36 -0.43 16 2 C -0.11 -0.78 1.59 -154.51 -0.25 -1.03 16 3 C -0.11 -0.61 5.64 -27.88 -0.16 -0.77 16 4 C 0.51 4.48 7.68 -10.98 -0.08 4.39 16 5 O -0.53 -6.79 14.96 5.56 0.08 -6.70 16 6 N -0.74 -5.16 5.56 -60.29 -0.33 -5.50 16 7 C 0.12 0.97 5.67 -4.04 -0.02 0.95 16 8 C -0.13 -0.96 5.33 -26.73 -0.14 -1.10 16 9 C -0.12 -1.09 5.21 -26.73 -0.14 -1.23 16 10 C -0.11 -1.29 5.21 -26.73 -0.14 -1.43 16 11 C -0.13 -1.97 5.33 -26.73 -0.14 -2.12 16 12 C 0.16 3.08 6.26 -4.04 -0.03 3.05 16 13 N -0.76 -18.75 5.41 -59.91 -0.32 -19.08 16 14 C -0.24 -7.15 10.47 -15.06 -0.16 -7.31 16 15 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 16 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 17 N -0.94 -29.92 13.97 55.49 0.78 -29.14 16 18 Si 0.89 22.58 27.74 -169.99 -4.71 17.86 16 19 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 21 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 22 C -0.18 -1.01 9.87 -26.73 -0.26 -1.28 16 23 C -0.16 -1.19 9.19 -26.74 -0.25 -1.43 16 24 H 0.07 0.60 7.60 -51.93 -0.39 0.21 16 25 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.37 7.95 -51.93 -0.41 -0.04 16 28 H 0.10 0.41 8.13 -51.93 -0.42 -0.01 16 29 H 0.40 1.69 8.47 -40.82 -0.35 1.35 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.36 8.65 5.53 -40.82 -0.23 8.42 16 43 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 44 H 0.09 0.43 8.08 -51.93 -0.42 0.01 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -34.52 381.46 -9.27 -43.78 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -9.00 Total: 2.77 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -1.50 Total: -9.75 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.12 Total: -53.72 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: 0.08 Total: -6.70 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.52 -9.27 -43.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179049010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.785 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds