Wall clock time and date at job start Tue Mar 31 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47367 * 2 1 4 4 C 1.53001 * 109.47367 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47184 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46813 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.46624 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00521 * 359.73045 * 7 6 5 9 9 N 1.34784 * 119.99774 * 180.02562 * 7 6 5 10 10 C 1.47426 * 125.64631 * 359.75325 * 9 7 6 11 11 C 1.54906 * 104.82959 * 204.09278 * 10 9 7 12 12 C 1.55155 * 101.58202 * 322.98796 * 11 10 9 13 13 H 1.08998 * 110.72241 * 276.96555 * 12 11 10 14 14 N 1.46503 * 110.71980 * 153.86751 * 12 11 10 15 15 C 1.36941 * 120.00297 * 86.45509 * 14 12 11 16 16 H 1.08004 * 119.99604 * 0.02562 * 15 14 12 17 17 C 1.38803 * 120.00076 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00518 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99936 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47078 * 59.99755 * 19 17 15 21 21 H 1.48496 * 109.47167 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46831 * 300.00000 * 19 17 15 23 23 C 1.47018 * 125.64699 * 179.44586 * 9 7 6 24 24 H 1.09004 * 109.88164 * 298.39212 * 23 9 7 25 25 C 1.52996 * 109.88443 * 59.56251 * 23 9 7 26 26 H 1.08998 * 109.47065 * 300.00398 * 1 2 3 27 27 H 1.09001 * 109.46892 * 60.00134 * 1 2 3 28 28 H 1.08994 * 109.47397 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46916 * 239.99883 * 2 1 3 30 30 H 1.09001 * 109.46892 * 119.99866 * 2 1 3 31 31 H 1.08998 * 109.47353 * 59.99778 * 3 2 1 32 32 H 1.09006 * 109.47395 * 300.00034 * 3 2 1 33 33 H 1.08998 * 109.47065 * 59.99602 * 4 3 2 34 34 H 1.09001 * 109.46892 * 299.99866 * 4 3 2 35 35 H 1.09001 * 109.46902 * 60.00345 * 5 4 3 36 36 H 1.08993 * 109.47243 * 300.00020 * 5 4 3 37 37 H 1.09001 * 109.46782 * 60.00667 * 6 5 4 38 38 H 1.08993 * 109.47555 * 300.00224 * 6 5 4 39 39 H 1.09004 * 110.36390 * 322.92750 * 10 9 7 40 40 H 1.09000 * 110.36912 * 85.14287 * 10 9 7 41 41 H 1.08996 * 111.00691 * 81.06419 * 11 10 9 42 42 H 1.09002 * 111.00619 * 204.87941 * 11 10 9 43 43 H 0.97000 * 119.99733 * 266.45650 * 14 12 11 44 44 H 0.96996 * 120.00078 * 180.02562 * 18 17 15 45 45 H 1.08993 * 109.47317 * 58.54428 * 25 23 9 46 46 H 1.09007 * 109.47202 * 178.54743 * 25 23 9 47 47 H 1.09001 * 109.46946 * 298.54455 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 6 5.6101 2.8848 0.0026 7 6 6.1124 4.3056 0.0026 8 8 5.3244 5.2275 -0.0033 9 7 7.4376 4.5519 0.0031 10 6 8.5012 3.5310 0.0089 11 6 9.7331 4.2454 0.6185 12 6 9.5902 5.6724 0.0265 13 1 10.0077 5.7163 -0.9794 14 7 10.2330 6.6610 0.8960 15 6 11.5694 6.9270 0.7595 16 1 12.1494 6.4082 0.0105 17 6 12.1784 7.8632 1.5836 18 7 11.4715 8.4958 2.4960 19 14 14.0013 8.2265 1.3968 20 1 14.2679 8.7287 0.0250 21 1 14.4047 9.2564 2.3876 22 1 14.7800 6.9836 1.6290 23 6 8.0617 5.8830 -0.0084 24 1 7.7797 6.4168 -0.9160 25 6 7.6199 6.6755 1.2235 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9338 0.9284 -0.8891 34 1 3.9330 0.9287 0.8909 35 1 3.7164 3.3985 0.8913 36 1 3.7172 3.3990 -0.8886 37 1 5.9741 2.3712 -0.8873 38 1 5.9727 2.3709 0.8927 39 1 8.2095 2.6828 0.6283 40 1 8.7162 3.2014 -1.0076 41 1 9.6739 4.2661 1.7067 42 1 10.6599 3.7760 0.2886 43 1 9.7119 7.1271 1.5684 44 1 11.8971 9.1503 3.0716 45 1 7.9003 6.1314 2.1253 46 1 8.1064 7.6510 1.2217 47 1 6.5384 6.8089 1.2011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180054838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:11 Heat of formation + Delta-G solvation = -51.164438 kcal Electronic energy + Delta-G solvation = -22322.218738 eV Core-core repulsion = 19118.165966 eV Total energy + Delta-G solvation = -3204.052772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.00324 -37.69745 -36.48116 -34.16992 -33.52859 -31.68068 -30.69307 -29.68079 -28.50226 -25.23734 -25.09102 -23.39822 -22.54206 -21.42604 -21.18649 -19.44755 -18.52003 -17.50797 -16.72161 -16.35766 -15.67085 -15.29099 -14.91984 -14.46276 -14.20006 -14.01005 -13.68090 -13.42018 -13.12710 -13.07123 -12.65015 -12.48619 -12.40177 -12.04246 -11.81403 -11.63019 -11.59986 -11.48386 -11.21053 -11.12351 -10.99100 -10.93298 -10.82573 -10.79373 -10.67408 -10.44353 -10.23255 -9.99215 -9.71474 -9.41052 -8.94812 -8.35298 -7.02683 -5.81769 -3.11694 2.86477 3.21509 3.41171 3.45949 3.46964 4.41889 4.54850 4.63566 4.65795 4.80576 4.90538 5.02025 5.05450 5.17184 5.19499 5.32822 5.38631 5.45423 5.46516 5.53750 5.55122 5.57558 5.62010 5.67279 5.72710 5.74687 5.83345 5.86232 5.89377 6.04029 6.07701 6.12388 6.15671 6.23757 6.26211 6.34274 6.56784 6.58501 6.73891 6.85280 7.00478 7.65220 7.83374 8.36546 8.42448 9.48206 10.03643 10.38651 11.40624 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.052063 B = 0.002564 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.680466 B =10918.375144 C =11186.875445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.104 4.104 6 C -0.136 4.136 7 C 0.524 3.476 8 O -0.546 6.546 9 N -0.611 5.611 10 C 0.098 3.902 11 C -0.154 4.154 12 C 0.173 3.827 13 H 0.062 0.938 14 N -0.718 5.718 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.128 3.872 24 H 0.070 0.930 25 C -0.158 4.158 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.391 0.609 44 H 0.257 0.743 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.310 -17.032 -5.416 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.142 4.142 6 C -0.176 4.176 7 C 0.313 3.687 8 O -0.423 6.423 9 N -0.345 5.345 10 C -0.025 4.025 11 C -0.195 4.195 12 C 0.061 3.939 13 H 0.080 0.920 14 N -0.361 5.361 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.207 4.207 18 N -0.579 5.579 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C 0.024 3.976 24 H 0.088 0.912 25 C -0.216 4.216 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.229 0.771 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.625 -16.486 -5.441 23.357 hybrid contribution 1.042 0.250 0.194 1.089 sum -14.583 -16.236 -5.247 22.446 Atomic orbital electron populations 1.21783 0.96038 1.01431 1.01847 1.21545 0.95761 0.97108 1.01892 1.21619 0.95413 0.96531 1.02286 1.21625 0.95455 0.96712 1.01962 1.21348 0.92922 0.96330 1.03575 1.21663 0.97702 0.94180 1.04007 1.20338 0.80655 0.91531 0.76225 1.90671 1.54528 1.46638 1.50511 1.48676 1.04877 1.08526 1.72470 1.22363 0.88367 0.91342 1.00440 1.23543 0.95577 0.98888 1.01479 1.21178 0.88814 0.88957 0.94933 0.92035 1.42669 1.07764 1.45404 1.40275 1.19191 0.85330 1.18143 1.14889 0.91129 1.24761 0.98157 0.99290 0.98536 1.69648 1.35216 1.29650 1.23388 0.86244 0.84994 0.77600 0.77164 1.21225 1.21690 1.21243 1.21808 0.94065 0.82794 0.98909 0.91223 1.21992 1.01407 1.01054 0.97137 0.92755 0.92785 0.92938 0.92143 0.92116 0.91925 0.91954 0.92035 0.92003 0.91251 0.91290 0.89284 0.89230 0.91408 0.91746 0.90701 0.90643 0.77098 0.93325 0.92590 0.90328 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.13 -0.84 5.93 -26.73 -0.16 -1.00 16 3 C -0.12 -0.92 5.21 -26.73 -0.14 -1.06 16 4 C -0.12 -0.95 5.21 -26.73 -0.14 -1.09 16 5 C -0.10 -1.07 4.50 -26.73 -0.12 -1.19 16 6 C -0.14 -1.45 4.71 -27.88 -0.13 -1.58 16 7 C 0.52 8.02 7.63 -10.98 -0.08 7.94 16 8 O -0.55 -10.27 14.87 5.56 0.08 -10.19 16 9 N -0.61 -9.46 3.08 -163.01 -0.50 -9.96 16 10 C 0.10 1.27 6.69 -2.53 -0.02 1.25 16 11 C -0.15 -2.50 6.77 -24.59 -0.17 -2.66 16 12 C 0.17 3.34 3.45 -66.09 -0.23 3.11 16 13 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 14 N -0.72 -17.42 5.02 -51.64 -0.26 -17.68 16 15 C -0.24 -6.57 9.98 -15.06 -0.15 -6.72 16 16 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 18 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 19 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 C 0.13 2.31 3.49 -66.95 -0.23 2.08 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 25 C -0.16 -3.04 7.93 37.16 0.29 -2.75 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.84 7.84 -51.93 -0.41 0.43 16 39 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.39 10.07 4.94 -40.82 -0.20 9.87 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 46 H 0.08 1.64 6.74 -51.93 -0.35 1.29 16 47 H 0.06 1.17 6.74 -51.93 -0.35 0.82 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -30.69 370.07 -9.24 -39.94 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -8.84 Total: 6.98 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -1.00 Total: -4.66 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.04 Total: -54.56 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.69 -9.24 -39.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180054838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.228 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds