Wall clock time and date at job start Tue Mar 31 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47008 * 2 1 4 4 C 1.52999 * 109.47090 * 120.00117 * 2 1 3 5 5 C 1.53000 * 109.47314 * 66.54470 * 4 2 1 6 6 C 1.52996 * 109.46988 * 163.01263 * 5 4 2 7 7 C 1.52996 * 109.47017 * 43.01244 * 5 4 2 8 8 C 1.50701 * 109.47067 * 283.01735 * 5 4 2 9 9 O 1.21281 * 119.99943 * 350.42817 * 8 5 4 10 10 N 1.34773 * 120.00035 * 170.43397 * 8 5 4 11 11 C 1.47427 * 125.64566 * 355.44266 * 10 8 5 12 12 C 1.54912 * 104.83419 * 155.91144 * 11 10 8 13 13 C 1.55156 * 101.58330 * 37.00331 * 12 11 10 14 14 H 1.09004 * 110.71579 * 82.86387 * 13 12 11 15 15 N 1.46497 * 110.72442 * 205.95930 * 13 12 11 16 16 C 1.36932 * 119.99935 * 271.16259 * 15 13 12 17 17 H 1.07997 * 120.00262 * 359.97438 * 16 15 13 18 18 C 1.38819 * 119.99768 * 180.02562 * 16 15 13 19 19 N 1.31616 * 119.99807 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99988 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47075 * 59.99629 * 20 18 16 22 22 H 1.48494 * 109.47251 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46965 * 299.99993 * 20 18 16 24 24 C 1.47023 * 125.65026 * 175.48334 * 10 8 5 25 25 H 1.08993 * 109.47223 * 291.51697 * 1 2 3 26 26 H 1.08999 * 109.47165 * 51.51738 * 1 2 3 27 27 H 1.09001 * 109.47361 * 171.51359 * 1 2 3 28 28 H 1.09002 * 109.46722 * 240.00001 * 2 1 3 29 29 H 1.08994 * 109.46833 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47030 * 299.99978 * 3 2 1 31 31 H 1.09001 * 109.46837 * 59.99862 * 3 2 1 32 32 H 1.09010 * 109.46865 * 306.54811 * 4 2 1 33 33 H 1.09000 * 109.47072 * 186.54749 * 4 2 1 34 34 H 1.09006 * 109.46941 * 185.16230 * 6 5 4 35 35 H 1.08998 * 109.47313 * 305.16499 * 6 5 4 36 36 H 1.09001 * 109.47197 * 65.16768 * 6 5 4 37 37 H 1.08992 * 109.47508 * 290.02638 * 7 5 4 38 38 H 1.09006 * 109.47033 * 50.02312 * 7 5 4 39 39 H 1.08999 * 109.47541 * 170.02462 * 7 5 4 40 40 H 1.08998 * 110.37110 * 37.06748 * 11 10 8 41 41 H 1.09001 * 110.36861 * 274.74375 * 11 10 8 42 42 H 1.09004 * 111.00234 * 278.93527 * 12 11 10 43 43 H 1.08997 * 111.00436 * 155.08130 * 12 11 10 44 44 H 0.97000 * 119.99996 * 91.15819 * 15 13 12 45 45 H 0.97001 * 119.99395 * 180.02562 * 19 18 16 46 46 H 1.09003 * 109.88073 * 61.60915 * 24 10 8 47 47 H 1.08998 * 109.88460 * 300.43780 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6687 -2.2034 1.1697 6 6 2.5156 -2.9955 2.1678 7 6 1.9326 -2.7200 -0.2460 8 6 0.2089 -2.3741 1.5027 9 8 -0.4259 -1.4393 1.9434 10 7 -0.3912 -3.5655 1.3109 11 6 0.2318 -4.7524 0.6972 12 6 -0.5734 -5.9542 1.2513 13 6 -2.0112 -5.3727 1.2942 14 1 -2.4860 -5.4456 0.3157 15 7 -2.8161 -6.0545 2.3109 16 6 -3.5194 -7.1830 1.9838 17 1 -3.4811 -7.5702 0.9764 18 6 -4.2824 -7.8287 2.9471 19 7 -4.3294 -7.3565 4.1747 20 14 -5.2425 -9.3677 2.5009 21 1 -4.3043 -10.4157 2.0245 22 1 -5.9696 -9.8620 3.6976 23 1 -6.2162 -9.0494 1.4258 24 6 -1.7758 -3.8966 1.6782 25 1 -0.3633 0.3769 0.9560 26 1 -0.3633 0.6395 -0.8044 27 1 -0.3634 -1.0164 -0.1517 28 1 1.8933 -0.5139 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.5841 -0.2795 2.1354 33 1 3.1237 -0.6209 1.3097 34 1 2.3175 -4.0606 2.0475 35 1 3.5719 -2.7993 1.9842 36 1 2.2605 -2.6910 3.1829 37 1 1.2074 -2.2840 -0.9329 38 1 2.9396 -2.4382 -0.5538 39 1 1.8390 -3.8059 -0.2599 40 1 1.2780 -4.8277 0.9935 41 1 0.1465 -4.7070 -0.3885 42 1 -0.2320 -6.2259 2.2502 43 1 -0.5170 -6.8073 0.5753 44 1 -2.8507 -5.7066 3.2157 45 1 -4.8624 -7.8080 4.8479 46 1 -2.4677 -3.2563 1.1309 47 1 -1.9161 -3.7658 2.7512 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186933562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:10 Heat of formation + Delta-G solvation = -28.738534 kcal Electronic energy + Delta-G solvation = -23770.233589 eV Core-core repulsion = 20567.153277 eV Total energy + Delta-G solvation = -3203.080311 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70626 -37.92970 -36.36333 -34.52711 -33.58368 -31.34149 -29.53809 -28.09563 -27.60152 -26.82210 -26.51909 -24.30144 -23.13915 -21.60271 -20.14160 -19.84950 -18.53058 -17.38174 -16.48121 -16.20330 -15.63320 -15.10098 -14.64325 -14.48817 -13.91959 -13.71217 -13.51204 -13.40148 -13.08835 -12.78367 -12.58143 -12.56223 -12.48275 -12.21361 -11.96659 -11.84634 -11.62566 -11.54269 -11.43109 -11.16311 -10.93356 -10.76654 -10.72983 -10.67686 -10.45725 -10.31905 -10.14970 -10.10822 -9.75843 -9.33964 -8.96402 -8.29391 -7.05190 -5.82939 -3.13547 2.86978 3.22349 3.40553 3.45323 3.46354 4.40523 4.53712 4.61018 4.69397 4.95464 4.97139 5.03720 5.09471 5.22569 5.32280 5.38974 5.44522 5.48897 5.53986 5.56644 5.63049 5.63851 5.71778 5.73707 5.77581 5.81627 5.92187 5.93111 5.95561 6.03971 6.10981 6.15490 6.18093 6.24121 6.27849 6.35635 6.38779 6.55914 6.60988 6.70885 6.90585 7.63618 7.82162 8.34331 8.43553 9.45838 10.00501 10.35166 11.39230 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036065 B = 0.003546 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.188647 B = 7894.163216 C = 8104.825708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.094 4.094 5 C -0.077 4.077 6 C -0.143 4.143 7 C -0.158 4.158 8 C 0.534 3.466 9 O -0.537 6.537 10 N -0.610 5.610 11 C 0.092 3.908 12 C -0.157 4.157 13 C 0.172 3.828 14 H 0.064 0.936 15 N -0.715 5.715 16 C -0.246 4.246 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.101 3.899 25 H 0.073 0.927 26 H 0.036 0.964 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.386 0.614 45 H 0.257 0.743 46 H 0.063 0.937 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.115 11.262 -9.171 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.132 4.132 5 C -0.080 4.080 6 C -0.201 4.201 7 C -0.215 4.215 8 C 0.323 3.677 9 O -0.415 6.415 10 N -0.344 5.344 11 C -0.030 4.030 12 C -0.198 4.198 13 C 0.060 3.940 14 H 0.082 0.918 15 N -0.356 5.356 16 C -0.377 4.377 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.022 4.022 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.220 0.780 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.674 11.684 -8.968 21.509 hybrid contribution -0.551 -0.870 0.095 1.034 sum 15.123 10.815 -8.873 20.601 Atomic orbital electron populations 1.22125 0.94399 1.01381 1.01945 1.21222 0.96768 0.95734 0.98015 1.21821 1.00341 0.96387 1.01661 1.21597 1.00131 0.92099 0.99360 1.20718 0.92222 0.97786 0.97272 1.21927 0.99300 1.00135 0.98690 1.22307 1.02214 1.02279 0.94674 1.20069 0.88752 0.80903 0.78009 1.90680 1.66239 1.38578 1.45965 1.48423 1.14147 1.11342 1.60494 1.22714 0.97630 0.85491 0.97212 1.23599 0.98499 0.96061 1.01664 1.21173 0.90461 0.88276 0.94079 0.91840 1.42349 1.54523 1.29875 1.08839 1.19172 1.21222 1.01614 0.95650 0.91028 1.24774 1.00632 0.99557 0.95679 1.69656 1.44537 1.41574 1.02012 0.86246 0.79814 0.82927 0.77032 1.21190 1.21659 1.21168 1.22273 0.81594 0.97490 1.00848 0.90795 0.94510 0.93000 0.91251 0.93094 0.92984 0.92722 0.90467 0.91673 0.91551 0.91566 0.92092 0.91837 0.91780 0.90886 0.90574 0.91667 0.90707 0.90663 0.77971 0.93298 0.91845 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 7.34 37.16 0.27 -1.55 16 2 C -0.10 -1.04 2.41 -90.62 -0.22 -1.25 16 3 C -0.14 -1.31 9.18 37.16 0.34 -0.97 16 4 C -0.09 -1.01 3.97 -26.73 -0.11 -1.12 16 5 C -0.08 -0.86 0.50 -155.66 -0.08 -0.94 16 6 C -0.14 -1.44 8.29 37.16 0.31 -1.13 16 7 C -0.16 -1.47 6.45 37.16 0.24 -1.23 16 8 C 0.53 8.03 4.65 -10.99 -0.05 7.98 16 9 O -0.54 -9.68 12.39 5.56 0.07 -9.61 16 10 N -0.61 -9.27 3.32 -170.51 -0.57 -9.84 16 11 C 0.09 1.18 4.84 -2.53 -0.01 1.17 16 12 C -0.16 -2.51 6.77 -24.58 -0.17 -2.68 16 13 C 0.17 3.27 3.59 -66.09 -0.24 3.04 16 14 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 15 N -0.72 -17.42 5.24 -51.65 -0.27 -17.69 16 16 C -0.25 -6.60 9.97 -15.06 -0.15 -6.75 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 20 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.10 1.81 6.62 -3.06 -0.02 1.79 16 25 H 0.07 1.11 6.65 -51.93 -0.35 0.76 16 26 H 0.04 0.43 8.13 -51.93 -0.42 0.01 16 27 H 0.05 0.75 5.01 -51.93 -0.26 0.49 16 28 H 0.07 0.67 6.07 -51.93 -0.32 0.35 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.98 7.29 -51.92 -0.38 0.60 16 33 H 0.06 0.58 7.96 -51.93 -0.41 0.17 16 34 H 0.07 0.66 5.62 -51.93 -0.29 0.37 16 35 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.64 6.04 -51.93 -0.31 0.33 16 38 H 0.06 0.49 8.04 -51.93 -0.42 0.08 16 39 H 0.07 0.64 4.43 -51.93 -0.23 0.41 16 40 H 0.08 0.83 4.13 -51.93 -0.21 0.61 16 41 H 0.07 0.74 7.56 -51.93 -0.39 0.35 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.39 10.14 7.54 -40.82 -0.31 9.83 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.07 1.36 7.71 -51.93 -0.40 0.96 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -30.15 346.44 -7.87 -38.01 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.05 Total: 8.03 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 0.03 Total: -4.02 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.11 Total: -54.51 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.07 Total: -9.61 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.15 -7.87 -38.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186933562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.275 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds