Wall clock time and date at job start Tue Mar 31 2020 05:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46637 * 2 1 4 4 C 1.52997 * 109.46875 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47358 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47521 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47009 * 180.02562 * 6 5 4 8 8 O 1.21274 * 120.00423 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99922 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63144 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 233.55709 * 10 9 7 12 12 C 1.53070 * 109.29524 * 305.57804 * 11 10 9 13 13 N 1.46498 * 109.44278 * 181.23594 * 12 11 10 14 14 C 1.36936 * 119.99742 * 84.79956 * 13 12 11 15 15 H 1.07997 * 120.00304 * 359.97438 * 14 13 12 16 16 C 1.38819 * 119.99612 * 180.02562 * 14 13 12 17 17 N 1.31611 * 120.00172 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99810 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47222 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47403 * 119.99672 * 18 16 14 21 21 H 1.48496 * 109.47297 * 240.00177 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 12 11 10 23 23 C 1.46928 * 120.62874 * 0.02562 * 9 7 6 24 24 H 1.08997 * 109.47019 * 299.99788 * 1 2 3 25 25 H 1.08997 * 109.47220 * 59.99819 * 1 2 3 26 26 H 1.09000 * 109.46708 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47019 * 240.00211 * 2 1 3 28 28 H 1.09003 * 109.47237 * 119.99727 * 2 1 3 29 29 H 1.09001 * 109.47350 * 59.99865 * 3 2 1 30 30 H 1.08997 * 109.47463 * 300.00032 * 3 2 1 31 31 H 1.09004 * 109.47566 * 60.00215 * 4 3 2 32 32 H 1.08998 * 109.47507 * 299.99600 * 4 3 2 33 33 H 1.09001 * 109.46994 * 59.99738 * 5 4 3 34 34 H 1.08997 * 109.47336 * 300.00201 * 5 4 3 35 35 H 1.09001 * 109.46917 * 60.00037 * 6 5 4 36 36 H 1.08997 * 109.47262 * 300.00592 * 6 5 4 37 37 H 1.09002 * 109.58751 * 353.41659 * 10 9 7 38 38 H 1.08996 * 109.58750 * 113.69843 * 10 9 7 39 39 H 1.08997 * 109.50046 * 65.38734 * 11 10 9 40 40 H 1.09003 * 109.49733 * 185.48713 * 11 10 9 41 41 H 1.09007 * 109.35101 * 301.12962 * 12 11 10 42 42 H 0.97004 * 120.00020 * 264.79513 * 13 12 11 43 43 H 0.97000 * 120.00375 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.49876 * 178.74890 * 22 12 11 45 45 H 1.09005 * 109.52615 * 58.67140 * 22 12 11 46 46 H 1.08998 * 109.58787 * 246.16207 * 23 9 7 47 47 H 1.09007 * 109.58600 * 6.44520 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8852 -0.0013 6 6 5.6099 2.8853 -0.0013 7 6 6.1121 4.3061 -0.0013 8 8 5.3240 5.2279 -0.0018 9 7 7.4372 4.5525 -0.0018 10 6 7.9421 5.9322 -0.0024 11 6 8.9207 6.1019 -1.1688 12 6 10.0102 5.0308 -1.0747 13 7 10.9645 5.2083 -2.1720 14 6 12.0011 6.0934 -2.0413 15 1 12.1150 6.6609 -1.1295 16 6 12.9051 6.2620 -3.0813 17 7 12.7661 5.5708 -4.1926 18 14 14.3188 7.4699 -2.9033 19 1 14.2521 8.1169 -1.5682 20 1 15.6084 6.7463 -3.0392 21 1 14.2195 8.5075 -3.9610 22 6 9.3758 3.6414 -1.1705 23 6 8.4043 3.4463 -0.0030 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9330 0.9290 -0.8909 32 1 3.9337 0.9287 0.8891 33 1 3.7169 3.3993 0.8887 34 1 3.7162 3.3988 -0.8912 35 1 5.9732 2.3711 -0.8911 36 1 5.9733 2.3718 0.8888 37 1 7.1096 6.6259 -0.1200 38 1 8.4556 6.1338 0.9377 39 1 8.3854 5.9917 -2.1118 40 1 9.3752 7.0915 -1.1213 41 1 10.5305 5.1275 -0.1218 42 1 10.8621 4.6988 -2.9911 43 1 13.3979 5.6883 -4.9191 44 1 10.1559 2.8814 -1.1256 45 1 8.8348 3.5520 -2.1125 46 1 8.9577 3.4438 0.9361 47 1 7.8764 2.4996 -0.1185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203574312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:24 Heat of formation + Delta-G solvation = -63.381877 kcal Electronic energy + Delta-G solvation = -22108.016880 eV Core-core repulsion = 18903.434321 eV Total energy + Delta-G solvation = -3204.582560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.06292 -37.53378 -36.53547 -34.48225 -33.61850 -32.02653 -30.97827 -29.64286 -28.89871 -25.49243 -24.54493 -22.84050 -22.64222 -21.51125 -21.22880 -20.06820 -18.71370 -17.16893 -16.90297 -16.34749 -15.69821 -15.46189 -14.83489 -14.38418 -14.23672 -13.95735 -13.75402 -13.61887 -13.40828 -13.22946 -13.00889 -12.66149 -12.54356 -12.32991 -12.00307 -11.66410 -11.64536 -11.48519 -11.15381 -10.98041 -10.94491 -10.93701 -10.82078 -10.77175 -10.69848 -10.42433 -10.23291 -9.91792 -9.72157 -9.55279 -8.92643 -8.46314 -6.99454 -5.79736 -3.08768 2.74233 3.13788 3.41232 3.47080 3.49154 4.36632 4.55490 4.60966 4.62095 4.78072 4.87908 4.94577 5.03410 5.15949 5.20407 5.24568 5.37028 5.41785 5.43906 5.46553 5.51428 5.52734 5.59094 5.66117 5.70158 5.72609 5.79618 5.84592 5.86620 5.90940 5.99347 6.02554 6.12985 6.20792 6.22840 6.29178 6.44217 6.54903 6.61561 6.92373 7.04122 7.56133 7.67662 8.29873 8.38631 9.49986 10.07215 10.41858 11.42932 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040484 B = 0.002494 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.459962 B =11226.032763 C =11551.844070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.104 4.104 6 C -0.140 4.140 7 C 0.512 3.488 8 O -0.551 6.551 9 N -0.608 5.608 10 C 0.112 3.888 11 C -0.149 4.149 12 C 0.179 3.821 13 N -0.725 5.725 14 C -0.239 4.239 15 H 0.071 0.929 16 C -0.014 4.014 17 N -0.932 5.932 18 Si 0.906 3.094 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.140 4.140 23 C 0.111 3.889 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.648 -11.212 10.328 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.142 4.142 6 C -0.180 4.180 7 C 0.300 3.700 8 O -0.429 6.429 9 N -0.341 5.341 10 C -0.011 4.011 11 C -0.190 4.190 12 C 0.068 3.932 13 N -0.365 5.365 14 C -0.370 4.370 15 H 0.089 0.911 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.737 3.263 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.179 4.179 23 C -0.013 4.013 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.903 -10.595 10.380 24.028 hybrid contribution 0.971 0.515 -0.357 1.155 sum -17.932 -10.080 10.023 22.883 Atomic orbital electron populations 1.21784 0.96042 1.01451 1.01823 1.21547 0.95759 0.97085 1.01934 1.21616 0.95406 0.96562 1.02248 1.21630 0.95474 0.96665 1.02041 1.21352 0.92915 0.96402 1.03516 1.21717 0.97821 0.94302 1.04150 1.20702 0.81826 0.91648 0.75801 1.90662 1.54913 1.46684 1.50651 1.48215 1.05413 1.07915 1.72586 1.21676 0.98036 0.82223 0.99173 1.22660 0.97211 1.02221 0.96939 1.20171 0.89315 0.90695 0.92983 1.42435 1.29004 1.49554 1.15487 1.19286 1.02571 1.15301 0.99850 0.91097 1.24753 0.99594 1.00290 0.96365 1.69666 1.38583 1.44242 1.05594 0.86129 0.82347 0.80561 0.77225 1.20542 1.21875 1.21889 1.22196 0.98265 0.99719 0.97738 1.21768 0.90906 0.89088 0.99506 0.92809 0.92755 0.92920 0.92068 0.92134 0.91994 0.91930 0.91909 0.92008 0.91365 0.91258 0.88913 0.89129 0.89791 0.91976 0.92351 0.90760 0.93455 0.78301 0.93550 0.90464 0.91770 0.91305 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.13 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.12 -0.89 5.21 -26.73 -0.14 -1.03 16 4 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 5 C -0.10 -1.01 4.50 -26.73 -0.12 -1.14 16 6 C -0.14 -1.39 4.05 -27.88 -0.11 -1.50 16 7 C 0.51 7.24 7.70 -10.98 -0.08 7.16 16 8 O -0.55 -9.75 15.39 5.56 0.09 -9.66 16 9 N -0.61 -8.48 2.98 -172.80 -0.51 -9.00 16 10 C 0.11 1.71 6.43 -3.71 -0.02 1.69 16 11 C -0.15 -2.68 5.67 -26.59 -0.15 -2.83 16 12 C 0.18 3.39 2.73 -67.88 -0.19 3.20 16 13 N -0.72 -17.70 5.12 -53.37 -0.27 -17.98 16 14 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 17 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 18 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 C -0.14 -2.12 5.55 -26.64 -0.15 -2.26 16 23 C 0.11 1.31 6.34 -3.74 -0.02 1.29 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.09 0.82 7.69 -51.93 -0.40 0.42 16 36 H 0.09 0.72 7.94 -51.93 -0.41 0.31 16 37 H 0.08 1.36 7.00 -51.93 -0.36 1.00 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.05 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.08 0.73 5.93 -51.92 -0.31 0.43 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -31.50 371.00 -9.52 -41.02 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.95 Total: 5.21 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.16 Total: -5.17 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.06 Total: -54.19 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.50 -9.52 -41.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203574312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.359 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds