Wall clock time and date at job start Tue Mar 31 2020 05:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46637 * 2 1 4 4 C 1.52997 * 109.46875 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47358 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47521 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47009 * 180.02562 * 6 5 4 8 8 O 1.21274 * 120.00423 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99922 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63144 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 233.55709 * 10 9 7 12 12 C 1.53070 * 109.29524 * 305.57804 * 11 10 9 13 13 N 1.46498 * 109.44278 * 181.23594 * 12 11 10 14 14 C 1.36936 * 119.99742 * 84.79956 * 13 12 11 15 15 H 1.07997 * 120.00304 * 359.97438 * 14 13 12 16 16 C 1.38819 * 119.99612 * 180.02562 * 14 13 12 17 17 N 1.31611 * 120.00172 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99810 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47222 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47403 * 119.99672 * 18 16 14 21 21 H 1.48496 * 109.47297 * 240.00177 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 12 11 10 23 23 C 1.46928 * 120.62874 * 0.02562 * 9 7 6 24 24 H 1.08997 * 109.47019 * 299.99788 * 1 2 3 25 25 H 1.08997 * 109.47220 * 59.99819 * 1 2 3 26 26 H 1.09000 * 109.46708 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47019 * 240.00211 * 2 1 3 28 28 H 1.09003 * 109.47237 * 119.99727 * 2 1 3 29 29 H 1.09001 * 109.47350 * 59.99865 * 3 2 1 30 30 H 1.08997 * 109.47463 * 300.00032 * 3 2 1 31 31 H 1.09004 * 109.47566 * 60.00215 * 4 3 2 32 32 H 1.08998 * 109.47507 * 299.99600 * 4 3 2 33 33 H 1.09001 * 109.46994 * 59.99738 * 5 4 3 34 34 H 1.08997 * 109.47336 * 300.00201 * 5 4 3 35 35 H 1.09001 * 109.46917 * 60.00037 * 6 5 4 36 36 H 1.08997 * 109.47262 * 300.00592 * 6 5 4 37 37 H 1.09002 * 109.58751 * 353.41659 * 10 9 7 38 38 H 1.08996 * 109.58750 * 113.69843 * 10 9 7 39 39 H 1.08997 * 109.50046 * 65.38734 * 11 10 9 40 40 H 1.09003 * 109.49733 * 185.48713 * 11 10 9 41 41 H 1.09007 * 109.35101 * 301.12962 * 12 11 10 42 42 H 0.97004 * 120.00020 * 264.79513 * 13 12 11 43 43 H 0.97000 * 120.00375 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.49876 * 178.74890 * 22 12 11 45 45 H 1.09005 * 109.52615 * 58.67140 * 22 12 11 46 46 H 1.08998 * 109.58787 * 246.16207 * 23 9 7 47 47 H 1.09007 * 109.58600 * 6.44520 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8852 -0.0013 6 6 5.6099 2.8853 -0.0013 7 6 6.1121 4.3061 -0.0013 8 8 5.3240 5.2279 -0.0018 9 7 7.4372 4.5525 -0.0018 10 6 7.9421 5.9322 -0.0024 11 6 8.9207 6.1019 -1.1688 12 6 10.0102 5.0308 -1.0747 13 7 10.9645 5.2083 -2.1720 14 6 12.0011 6.0934 -2.0413 15 1 12.1150 6.6609 -1.1295 16 6 12.9051 6.2620 -3.0813 17 7 12.7661 5.5708 -4.1926 18 14 14.3188 7.4699 -2.9033 19 1 14.2521 8.1169 -1.5682 20 1 15.6084 6.7463 -3.0392 21 1 14.2195 8.5075 -3.9610 22 6 9.3758 3.6414 -1.1705 23 6 8.4043 3.4463 -0.0030 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9330 0.9290 -0.8909 32 1 3.9337 0.9287 0.8891 33 1 3.7169 3.3993 0.8887 34 1 3.7162 3.3988 -0.8912 35 1 5.9732 2.3711 -0.8911 36 1 5.9733 2.3718 0.8888 37 1 7.1096 6.6259 -0.1200 38 1 8.4556 6.1338 0.9377 39 1 8.3854 5.9917 -2.1118 40 1 9.3752 7.0915 -1.1213 41 1 10.5305 5.1275 -0.1218 42 1 10.8621 4.6988 -2.9911 43 1 13.3979 5.6883 -4.9191 44 1 10.1559 2.8814 -1.1256 45 1 8.8348 3.5520 -2.1125 46 1 8.9577 3.4438 0.9361 47 1 7.8764 2.4996 -0.1185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203574312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:23 Heat of formation + Delta-G solvation = -81.353153 kcal Electronic energy + Delta-G solvation = -22108.796173 eV Core-core repulsion = 18903.434321 eV Total energy + Delta-G solvation = -3205.361853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.20717 -38.82765 -37.21797 -36.13783 -34.37066 -33.75711 -32.16306 -31.12324 -29.89669 -26.75435 -25.80226 -24.17139 -24.01276 -22.32663 -21.81883 -21.35646 -19.95014 -19.02984 -18.09877 -17.09090 -16.81525 -16.69879 -16.29104 -15.48227 -15.41163 -15.22790 -15.12254 -14.84835 -14.50119 -14.32689 -13.90435 -13.78042 -13.45690 -13.34548 -13.19139 -12.97771 -12.87693 -12.63559 -12.29243 -12.29026 -12.17517 -12.11728 -11.93891 -11.75675 -11.69497 -11.57852 -11.48445 -11.33659 -11.30020 -10.91515 -10.70953 -9.64871 -9.01426 -7.94859 -5.23073 1.46807 1.47578 1.57152 1.66107 2.06634 2.55641 3.38385 3.53986 3.82435 3.85726 3.89638 4.03923 4.13278 4.18309 4.23761 4.25478 4.35049 4.39390 4.42433 4.58424 4.59615 4.66249 4.73291 4.82528 4.84838 4.86695 4.88525 4.93224 4.98556 5.00627 5.12053 5.14477 5.17083 5.26365 5.29174 5.34460 5.44302 5.48900 5.52488 5.53749 5.57821 5.63408 6.27692 6.48233 7.20553 7.33728 8.10097 8.32550 9.28799 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040484 B = 0.002494 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.459962 B =11226.032763 C =11551.844070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.113 4.113 5 C -0.101 4.101 6 C -0.133 4.133 7 C 0.505 3.495 8 O -0.594 6.594 9 N -0.610 5.610 10 C 0.120 3.880 11 C -0.137 4.137 12 C 0.172 3.828 13 N -0.737 5.737 14 C -0.236 4.236 15 H 0.076 0.924 16 C -0.078 4.078 17 N -0.970 5.970 18 Si 0.970 3.030 19 H -0.266 1.266 20 H -0.293 1.293 21 H -0.297 1.297 22 C -0.132 4.132 23 C 0.116 3.884 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.083 0.917 45 H 0.054 0.946 46 H 0.089 0.911 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.908 -12.903 12.143 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.160 4.160 4 C -0.150 4.150 5 C -0.139 4.139 6 C -0.172 4.172 7 C 0.296 3.704 8 O -0.475 6.475 9 N -0.343 5.343 10 C -0.003 4.003 11 C -0.178 4.178 12 C 0.063 3.937 13 N -0.376 5.376 14 C -0.368 4.368 15 H 0.094 0.906 16 C -0.270 4.270 17 N -0.621 5.621 18 Si 0.799 3.201 19 H -0.190 1.190 20 H -0.220 1.220 21 H -0.225 1.225 22 C -0.171 4.171 23 C -0.006 4.006 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.130 0.870 36 H 0.140 0.860 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.101 0.899 45 H 0.073 0.927 46 H 0.107 0.893 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.182 -12.301 12.246 25.870 hybrid contribution 0.980 1.062 -0.891 1.698 sum -18.201 -11.240 11.355 24.219 Atomic orbital electron populations 1.21799 0.95940 1.01857 1.01673 1.21534 0.95894 0.96383 1.02327 1.21618 0.95570 0.97124 1.01657 1.21576 0.95308 0.95061 1.03083 1.21302 0.93125 0.97604 1.01855 1.21791 0.97546 0.91440 1.06438 1.21526 0.81325 0.93078 0.74496 1.90648 1.55925 1.48437 1.52505 1.48324 1.06010 1.07657 1.72282 1.21452 0.96898 0.83515 0.98464 1.22446 0.97245 1.00874 0.97269 1.20449 0.88668 0.93377 0.91178 1.42663 1.29578 1.48946 1.16455 1.19661 1.02682 1.14808 0.99600 0.90579 1.25537 1.02475 1.02573 0.96419 1.69814 1.39668 1.46260 1.06378 0.85121 0.79198 0.78284 0.77466 1.18986 1.22001 1.22495 1.22089 0.98913 0.97020 0.99031 1.21930 0.90204 0.89825 0.98682 0.92845 0.93079 0.92237 0.91846 0.91502 0.92393 0.92838 0.91148 0.90532 0.92694 0.93435 0.87019 0.85983 0.91042 0.90284 0.94411 0.92678 0.93246 0.79689 0.94137 0.89867 0.92703 0.89317 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.12 -1.39 5.93 30.60 0.18 -1.20 16 3 C -0.12 -1.62 5.21 30.59 0.16 -1.46 16 4 C -0.11 -1.42 5.21 30.59 0.16 -1.26 16 5 C -0.10 -1.80 4.50 30.60 0.14 -1.66 16 6 C -0.13 -2.19 4.05 29.85 0.12 -2.07 16 7 C 0.51 13.36 7.70 87.66 0.67 14.03 16 8 O -0.59 -20.90 15.39 -3.01 -0.05 -20.95 16 9 N -0.61 -15.65 2.98 -819.01 -2.44 -18.08 16 10 C 0.12 3.58 6.43 86.36 0.56 4.13 16 11 C -0.14 -4.95 5.67 30.68 0.17 -4.77 16 12 C 0.17 6.38 2.73 45.03 0.12 6.50 16 13 N -0.74 -36.26 5.12 -322.76 -1.65 -37.92 16 14 C -0.24 -12.86 9.93 84.04 0.83 -12.02 16 15 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 16 C -0.08 -4.45 5.50 84.87 0.47 -3.98 16 17 N -0.97 -59.19 13.06 21.65 0.28 -58.90 16 18 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 22 C -0.13 -3.70 5.55 30.65 0.17 -3.53 16 23 C 0.12 2.30 6.34 86.34 0.55 2.85 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 34 H 0.05 1.04 8.10 -2.39 -0.02 1.03 16 35 H 0.11 1.49 7.69 -2.39 -0.02 1.47 16 36 H 0.12 1.31 7.94 -2.39 -0.02 1.30 16 37 H 0.07 2.33 7.00 -2.39 -0.02 2.31 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 1.83 8.08 -2.38 -0.02 1.81 16 42 H 0.37 19.78 7.80 -92.71 -0.72 19.06 16 43 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 44 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 46 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.12 1.52 5.93 -2.38 -0.01 1.51 16 Total: -1.00 -69.68 371.00 3.38 -66.31 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.19 Total: 26.95 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.02 Total: -5.43 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -3.81 Total: -114.90 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.05 Total: -20.95 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -69.68 3.38 -66.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203574312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.047 kcal (2) G-P(sol) polarization free energy of solvation -69.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds