Wall clock time and date at job start Tue Mar 31 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47630 * 2 1 4 4 C 1.53003 * 109.47216 * 239.99720 * 2 1 3 5 5 C 1.53007 * 109.46650 * 120.00143 * 2 1 3 6 6 C 1.50696 * 109.47054 * 59.99928 * 5 2 1 7 7 O 1.21286 * 120.00306 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00030 * 180.02562 * 6 5 2 9 9 C 1.46926 * 120.63336 * 180.02562 * 8 6 5 10 10 C 1.53191 * 108.89109 * 233.68039 * 9 8 6 11 11 C 1.53035 * 109.31327 * 305.29292 * 10 9 8 12 12 C 1.53007 * 109.46118 * 181.38770 * 11 10 9 13 13 N 1.46500 * 109.47181 * 174.99781 * 12 11 10 14 14 C 1.36933 * 119.99958 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00261 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00222 * 180.02562 * 14 13 12 17 17 N 1.31616 * 119.99893 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00067 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47211 * 89.99882 * 18 16 14 20 20 H 1.48503 * 109.47122 * 209.99938 * 18 16 14 21 21 H 1.48505 * 109.46991 * 329.99843 * 18 16 14 22 22 C 1.53038 * 109.54175 * 61.36680 * 11 10 9 23 23 C 1.47207 * 120.81118 * 0.14238 * 8 6 5 24 24 H 1.08998 * 109.47438 * 300.00435 * 1 2 3 25 25 H 1.09010 * 109.46846 * 59.99999 * 1 2 3 26 26 H 1.08994 * 109.47622 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47429 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47051 * 300.00277 * 3 2 1 29 29 H 1.09005 * 109.47197 * 59.99689 * 3 2 1 30 30 H 1.09002 * 109.46881 * 300.00668 * 4 2 1 31 31 H 1.08998 * 109.46656 * 60.00218 * 4 2 1 32 32 H 1.08996 * 109.46947 * 180.02562 * 4 2 1 33 33 H 1.08992 * 109.47110 * 299.99699 * 5 2 1 34 34 H 1.09000 * 109.46956 * 179.97438 * 5 2 1 35 35 H 1.09002 * 109.58861 * 113.82042 * 9 8 6 36 36 H 1.08996 * 109.58519 * 353.53933 * 9 8 6 37 37 H 1.09003 * 109.49975 * 65.24379 * 10 9 8 38 38 H 1.09000 * 109.49553 * 185.30642 * 10 9 8 39 39 H 1.09005 * 109.46002 * 301.35718 * 11 10 9 40 40 H 1.08996 * 109.46924 * 295.00300 * 12 11 10 41 41 H 1.09004 * 109.46756 * 54.99920 * 12 11 10 42 42 H 0.97000 * 120.00269 * 359.97438 * 13 12 11 43 43 H 0.96999 * 120.00395 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.49557 * 58.58503 * 22 11 10 45 45 H 1.08996 * 109.50003 * 178.68400 * 22 11 10 46 46 H 1.08996 * 109.53610 * 6.53286 * 23 8 6 47 47 H 1.09002 * 109.68003 * 246.22753 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 6 1.5375 -2.1421 1.2492 7 8 0.8398 -2.5386 0.3398 8 7 1.8625 -2.9719 2.2603 9 6 1.3808 -4.3599 2.2740 10 6 0.6715 -4.6256 3.6055 11 6 1.6150 -4.2794 4.7596 12 6 0.9221 -4.5762 6.0911 13 7 1.8647 -4.3587 7.1913 14 6 1.4657 -4.5628 8.4852 15 1 0.4560 -4.8838 8.6947 16 6 2.3587 -4.3562 9.5277 17 7 3.5890 -3.9646 9.2725 18 14 1.8145 -4.6353 11.2928 19 1 2.0791 -6.0456 11.6752 20 1 2.5705 -3.7281 12.1932 21 1 0.3613 -4.3541 11.4131 22 6 1.9799 -2.7946 4.6947 23 6 2.7046 -2.5082 3.3752 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9562 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2489 33 1 1.6766 -0.2075 2.1392 34 1 3.1299 -0.7218 1.2491 35 1 2.2253 -5.0408 2.1676 36 1 0.6826 -4.5124 1.4512 37 1 -0.2243 -4.0078 3.6702 38 1 0.3929 -5.6777 3.6657 39 1 2.5214 -4.8797 4.6802 40 1 0.0651 -3.9134 6.2104 41 1 0.5842 -5.6125 6.1017 42 1 2.7715 -4.0701 7.0032 43 1 4.2132 -3.8205 10.0009 44 1 1.0718 -2.1941 4.7491 45 1 2.6332 -2.5436 5.5303 46 1 2.8790 -1.4366 3.2791 47 1 3.6579 -3.0364 3.3595 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204501242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:07 Heat of formation + Delta-G solvation = -48.229599 kcal Electronic energy + Delta-G solvation = -23097.330076 eV Core-core repulsion = 19893.404569 eV Total energy + Delta-G solvation = -3203.925507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51132 -38.25607 -36.39742 -34.90217 -32.91195 -31.28967 -30.32853 -28.59055 -27.33025 -27.26714 -26.37288 -23.72604 -23.19215 -21.82742 -20.40942 -19.37632 -18.51632 -17.34382 -16.89538 -15.80473 -15.62920 -14.79234 -14.64901 -14.47849 -14.35661 -14.14380 -13.78556 -13.69686 -13.47384 -12.97021 -12.68175 -12.46761 -12.33869 -12.26568 -12.15133 -11.89059 -11.77392 -11.34637 -11.22068 -11.11974 -11.00022 -10.84751 -10.82591 -10.77548 -10.41367 -10.30249 -10.24358 -9.98737 -9.65495 -9.42291 -8.88278 -8.56315 -6.92670 -5.78259 -3.06230 2.61759 2.99781 3.42535 3.47927 3.49319 4.43323 4.52450 4.57911 4.68846 4.86095 4.95743 5.05124 5.11854 5.21684 5.32522 5.33496 5.37215 5.41609 5.49465 5.52649 5.55222 5.63035 5.65471 5.74393 5.80113 5.81199 5.94808 5.95844 5.99145 6.01077 6.07035 6.12484 6.18972 6.27549 6.37872 6.41001 6.45371 6.49780 6.66060 6.80470 6.91410 7.43392 7.69193 8.20337 8.41235 9.52407 10.10508 10.45295 11.44774 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030476 B = 0.003155 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.523594 B = 8871.698791 C = 9308.453259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.152 4.152 5 C -0.133 4.133 6 C 0.517 3.483 7 O -0.541 6.541 8 N -0.610 5.610 9 C 0.112 3.888 10 C -0.125 4.125 11 C -0.094 4.094 12 C 0.158 3.842 13 N -0.732 5.732 14 C -0.238 4.238 15 H 0.069 0.931 16 C -0.015 4.015 17 N -0.935 5.935 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.125 4.125 23 C 0.105 3.895 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.905 7.097 -19.214 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.052 4.052 3 C -0.200 4.200 4 C -0.209 4.209 5 C -0.173 4.173 6 C 0.306 3.694 7 O -0.420 6.420 8 N -0.343 5.343 9 C -0.010 4.010 10 C -0.164 4.164 11 C -0.113 4.113 12 C 0.030 3.970 13 N -0.376 5.376 14 C -0.369 4.369 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.584 5.584 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.163 4.163 23 C -0.018 4.018 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.372 6.855 -19.541 20.844 hybrid contribution 0.181 -0.004 1.230 1.244 sum -2.191 6.851 -18.311 19.673 Atomic orbital electron populations 1.22103 0.94122 1.04112 1.00682 1.20274 0.96399 0.94422 0.94090 1.21901 1.00837 0.95393 1.01847 1.22099 0.99865 1.02878 0.96103 1.21821 1.02254 0.92860 1.00345 1.20641 0.79906 0.87606 0.81236 1.90540 1.38518 1.77261 1.35632 1.48300 1.51202 1.12274 1.22508 1.21591 0.99040 0.81639 0.98764 1.21903 0.98802 1.01959 0.93746 1.21302 0.98900 0.95954 0.95109 1.20671 0.92753 0.97282 0.86257 1.42374 1.11781 1.82063 1.01416 1.19238 0.96510 1.37860 0.83327 0.91277 1.24723 0.95942 1.02444 0.97922 1.69647 1.04420 1.53304 1.30980 0.86195 0.77574 0.77492 0.84977 1.21748 1.21779 1.20795 1.21929 1.01236 0.96907 0.96250 1.21932 0.93639 1.00044 0.86148 0.93552 0.93264 0.89743 0.92716 0.92490 0.92639 0.89766 0.93255 0.93668 0.88890 0.89076 0.91725 0.89304 0.91663 0.90741 0.91014 0.96449 0.96392 0.78284 0.93545 0.91807 0.89335 0.89991 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.18 37.16 0.30 -1.31 16 2 C -0.05 -0.49 0.77 -154.51 -0.12 -0.61 16 3 C -0.14 -1.13 8.47 37.15 0.31 -0.81 16 4 C -0.15 -1.54 8.18 37.16 0.30 -1.24 16 5 C -0.13 -1.29 3.12 -27.88 -0.09 -1.38 16 6 C 0.52 6.38 7.11 -10.99 -0.08 6.30 16 7 O -0.54 -7.90 10.76 5.55 0.06 -7.84 16 8 N -0.61 -7.36 2.98 -172.52 -0.51 -7.88 16 9 C 0.11 1.36 6.42 -3.71 -0.02 1.33 16 10 C -0.13 -1.62 5.36 -26.61 -0.14 -1.76 16 11 C -0.09 -1.43 2.19 -90.58 -0.20 -1.63 16 12 C 0.16 3.11 5.65 -4.04 -0.02 3.08 16 13 N -0.73 -18.09 5.32 -59.90 -0.32 -18.41 16 14 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 15 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 18 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C -0.13 -1.77 5.25 -26.59 -0.14 -1.91 16 23 C 0.10 1.19 6.36 -3.53 -0.02 1.17 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.08 1.08 5.51 -51.93 -0.29 0.79 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 1.04 5.51 -51.93 -0.29 0.75 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.83 7.69 -51.93 -0.40 0.43 16 34 H 0.09 0.76 7.96 -51.93 -0.41 0.35 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.12 7.00 -51.93 -0.36 0.76 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.38 9.80 6.84 -40.82 -0.28 9.52 16 43 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 1.44 7.15 -51.93 -0.37 1.07 16 46 H 0.08 0.77 5.97 -51.93 -0.31 0.46 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -30.64 357.45 -8.44 -39.08 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -8.60 Total: 5.53 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -0.16 Total: -6.04 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.11 Total: -53.37 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.06 Total: -7.84 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.64 -8.44 -39.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204501242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.148 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds