Wall clock time and date at job start Tue Mar 31 2020 05:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47280 * 2 1 4 4 C 1.52999 * 109.46902 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47471 * 60.00045 * 4 3 2 6 6 C 1.53002 * 109.47219 * 299.99515 * 4 3 2 7 7 C 1.50702 * 109.47128 * 180.02562 * 4 3 2 8 8 O 1.21284 * 119.99884 * 6.93693 * 7 4 3 9 9 N 1.34768 * 120.00240 * 186.94687 * 7 4 3 10 10 C 1.46931 * 120.63086 * 354.76270 * 9 7 4 11 11 C 1.53190 * 108.89517 * 233.51478 * 10 9 7 12 12 C 1.53077 * 109.29788 * 305.58053 * 11 10 9 13 13 C 1.53039 * 109.65619 * 61.14890 * 12 11 10 14 14 H 1.09003 * 109.52423 * 58.67129 * 13 12 11 15 15 N 1.46504 * 109.49420 * 178.74810 * 13 12 11 16 16 C 1.36927 * 120.00144 * 274.84022 * 15 13 12 17 17 H 1.07999 * 120.00491 * 359.97438 * 16 15 13 18 18 C 1.38817 * 120.00286 * 179.97438 * 16 15 13 19 19 N 1.31626 * 119.99643 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00325 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46842 * 90.00331 * 20 18 16 22 22 H 1.48500 * 109.46890 * 210.00246 * 20 18 16 23 23 H 1.48501 * 109.46947 * 330.00189 * 20 18 16 24 24 C 1.46926 * 120.63275 * 174.74259 * 9 7 4 25 25 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46595 * 300.00616 * 1 2 3 27 27 H 1.09004 * 109.46537 * 59.99789 * 1 2 3 28 28 H 1.09001 * 109.46779 * 240.00065 * 2 1 3 29 29 H 1.09004 * 109.46537 * 120.00211 * 2 1 3 30 30 H 1.09000 * 109.47007 * 59.99769 * 3 2 1 31 31 H 1.08998 * 109.47084 * 299.99527 * 3 2 1 32 32 H 1.09001 * 109.47201 * 172.60825 * 5 4 3 33 33 H 1.09000 * 109.46975 * 292.60898 * 5 4 3 34 34 H 1.08998 * 109.47232 * 52.60944 * 5 4 3 35 35 H 1.09007 * 109.46986 * 314.20849 * 6 4 3 36 36 H 1.08999 * 109.46990 * 74.19818 * 6 4 3 37 37 H 1.08993 * 109.47763 * 194.20361 * 6 4 3 38 38 H 1.08996 * 109.58615 * 353.37896 * 10 9 7 39 39 H 1.09002 * 109.58392 * 113.65872 * 10 9 7 40 40 H 1.09008 * 109.49182 * 65.38925 * 11 10 9 41 41 H 1.08993 * 109.49718 * 185.47997 * 11 10 9 42 42 H 1.09000 * 109.34476 * 301.12577 * 12 11 10 43 43 H 1.08996 * 109.45121 * 181.24309 * 12 11 10 44 44 H 0.97001 * 119.99970 * 94.83866 * 15 13 12 45 45 H 0.96995 * 120.00076 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.59009 * 246.20011 * 24 9 7 47 47 H 1.09000 * 109.59054 * 6.62629 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0796 0.7213 -1.2502 6 6 4.0806 0.7210 1.2483 7 6 4.0725 2.8631 0.0000 8 8 3.2917 3.7824 0.1277 9 7 5.3894 3.1123 -0.1416 10 6 6.3597 2.0098 -0.1826 11 6 7.4427 2.2626 0.8709 12 6 8.0522 3.6489 0.6473 13 6 6.9680 4.7183 0.7982 14 1 6.5272 4.6524 1.7930 15 7 7.5609 6.0452 0.6131 16 6 8.1501 6.6853 1.6704 17 1 8.1775 6.2124 2.6410 18 6 8.7124 7.9423 1.4950 19 7 8.6787 8.5190 0.3122 20 14 9.5157 8.8160 2.9375 21 1 10.9546 8.4539 2.9964 22 1 9.3814 10.2846 2.7637 23 1 8.8494 8.4038 4.1990 24 6 5.8820 4.4916 -0.2582 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6769 1.9562 -0.8900 32 1 5.1615 0.8343 -1.3191 33 1 3.8282 -0.3374 -1.1866 34 1 3.6121 1.1532 -2.1350 35 1 3.5265 1.0682 2.1205 36 1 3.9378 -0.3533 1.1313 37 1 5.1410 0.9340 1.3831 38 1 5.8531 1.0690 0.0325 39 1 6.8160 1.9613 -1.1714 40 1 6.9997 2.2182 1.8659 41 1 8.2194 1.5028 0.7838 42 1 8.4753 3.6997 -0.3560 43 1 8.8384 3.8225 1.3820 44 1 7.5361 6.4702 -0.2585 45 1 9.0712 9.3975 0.1896 46 1 6.3012 4.6471 -1.2523 47 1 5.0603 5.1884 -0.0929 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209357620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:51 Heat of formation + Delta-G solvation = -31.948200 kcal Electronic energy + Delta-G solvation = -23623.197581 eV Core-core repulsion = 20419.978088 eV Total energy + Delta-G solvation = -3203.219493 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71687 -37.67238 -36.57196 -34.61112 -32.91369 -31.94039 -31.15070 -28.37758 -27.58639 -26.66527 -25.60649 -23.92890 -22.96390 -22.02728 -20.73143 -19.55810 -18.57015 -17.17908 -16.50372 -15.99065 -15.50057 -15.20396 -14.62503 -14.34830 -14.16430 -14.05236 -13.74177 -13.51117 -13.27830 -13.22088 -12.90470 -12.45568 -12.41422 -12.33213 -12.20941 -11.88150 -11.80579 -11.20613 -11.09866 -11.02539 -10.91280 -10.88835 -10.75828 -10.62176 -10.48121 -10.38685 -10.22021 -10.04505 -9.71165 -9.32809 -8.90413 -8.34080 -6.97987 -5.77067 -3.06517 2.81732 3.16304 3.43691 3.49089 3.50843 4.37521 4.50673 4.59316 4.70195 4.90544 4.94965 4.96299 5.03869 5.13228 5.24197 5.31100 5.36904 5.49966 5.51250 5.51887 5.59287 5.64229 5.67876 5.69147 5.71627 5.77333 5.80319 5.87615 5.92451 5.94452 6.03052 6.06730 6.17914 6.20184 6.26979 6.28906 6.40813 6.56907 6.74532 6.90271 7.06229 7.65186 7.69854 8.38148 8.41840 9.52102 10.07724 10.42852 11.45512 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031143 B = 0.003617 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.861365 B = 7738.892693 C = 8049.483285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.094 4.094 4 C -0.080 4.080 5 C -0.161 4.161 6 C -0.154 4.154 7 C 0.521 3.479 8 O -0.542 6.542 9 N -0.602 5.602 10 C 0.088 3.912 11 C -0.135 4.135 12 C -0.136 4.136 13 C 0.169 3.831 14 H 0.049 0.951 15 N -0.721 5.721 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.105 3.895 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.063 0.937 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.739 -21.491 -2.485 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.132 4.132 4 C -0.083 4.083 5 C -0.218 4.218 6 C -0.211 4.211 7 C 0.309 3.691 8 O -0.418 6.418 9 N -0.335 5.335 10 C -0.034 4.034 11 C -0.174 4.174 12 C -0.177 4.177 13 C 0.058 3.942 14 H 0.067 0.933 15 N -0.362 5.362 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.018 4.018 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.100 -20.891 -2.255 23.313 hybrid contribution 0.672 0.731 0.440 1.086 sum -9.428 -20.159 -1.815 22.329 Atomic orbital electron populations 1.21768 0.95962 1.01293 1.01975 1.21635 0.95771 0.96833 1.02065 1.21460 0.91823 0.96500 1.03426 1.20741 0.97404 0.92619 0.97559 1.22367 1.02735 1.00449 0.96280 1.22188 1.02191 1.00379 0.96341 1.20530 0.81849 0.90920 0.75838 1.90686 1.55116 1.46571 1.49471 1.48034 1.05756 1.07704 1.72054 1.22344 0.90881 0.90516 0.99681 1.21984 0.97657 0.98988 0.98795 1.22278 1.00191 0.93361 1.01883 1.20465 0.90807 0.86567 0.96350 0.93277 1.42312 1.67946 1.14763 1.11205 1.19205 1.28949 0.98532 0.90228 0.91187 1.24751 1.01763 0.97536 0.96829 1.69663 1.50465 1.16513 1.21398 0.86184 0.79225 0.78991 0.81765 1.21731 1.21742 1.20742 1.21989 0.98576 0.81660 0.99534 0.92951 0.92718 0.92779 0.91834 0.91805 0.91120 0.91501 0.90481 0.91376 0.92135 0.91845 0.91317 0.90926 0.88039 0.91558 0.91879 0.91338 0.92543 0.91633 0.78216 0.93470 0.91828 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.00 5.26 -26.73 -0.14 -1.14 16 3 C -0.09 -1.01 3.54 -26.73 -0.09 -1.11 16 4 C -0.08 -0.87 0.52 -155.66 -0.08 -0.95 16 5 C -0.16 -1.39 7.50 37.16 0.28 -1.12 16 6 C -0.15 -1.41 7.29 37.16 0.27 -1.13 16 7 C 0.52 8.03 6.47 -10.99 -0.07 7.96 16 8 O -0.54 -10.63 15.40 5.55 0.09 -10.54 16 9 N -0.60 -8.99 2.96 -172.77 -0.51 -9.50 16 10 C 0.09 1.01 3.77 -3.71 -0.01 0.99 16 11 C -0.14 -1.71 5.92 -26.59 -0.16 -1.86 16 12 C -0.14 -2.34 5.46 -26.67 -0.15 -2.48 16 13 C 0.17 3.42 2.93 -67.81 -0.20 3.22 16 14 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 15 N -0.72 -18.22 5.12 -53.31 -0.27 -18.50 16 16 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 20 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.11 1.92 5.91 -3.71 -0.02 1.90 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.46 6.60 -51.93 -0.34 0.11 16 29 H 0.06 0.47 6.77 -51.93 -0.35 0.12 16 30 H 0.07 0.87 8.02 -51.93 -0.42 0.45 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.64 4.31 -51.93 -0.22 0.41 16 33 H 0.07 0.45 6.73 -51.93 -0.35 0.10 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.63 8.07 -51.92 -0.42 0.21 16 36 H 0.07 0.47 7.09 -51.93 -0.37 0.10 16 37 H 0.07 0.67 4.89 -51.93 -0.25 0.42 16 38 H 0.10 0.91 2.91 -51.93 -0.15 0.76 16 39 H 0.07 0.70 7.94 -51.93 -0.41 0.29 16 40 H 0.06 0.81 7.93 -51.92 -0.41 0.40 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.09 1.91 7.00 -51.93 -0.36 1.54 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -32.07 350.87 -8.11 -40.19 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -8.15 Total: 6.88 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -0.25 Total: -3.78 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.06 Total: -55.59 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.07 -8.11 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209357620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.240 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds