Wall clock time and date at job start Tue Mar 31 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46942 * 2 1 4 4 C 1.53002 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47111 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47248 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47255 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00067 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00063 * 179.97438 * 7 6 5 10 10 C 1.46930 * 120.63050 * 359.97375 * 9 7 6 11 11 C 1.53195 * 108.77695 * 233.63227 * 10 9 7 12 12 C 1.53045 * 109.30969 * 305.36626 * 11 10 9 13 13 C 1.53033 * 109.54155 * 61.36742 * 12 11 10 14 14 H 1.09005 * 109.52577 * 58.59455 * 13 12 11 15 15 N 1.46494 * 109.50279 * 178.68377 * 13 12 11 16 16 C 1.36945 * 119.99612 * 274.83869 * 15 13 12 17 17 H 1.07999 * 120.00077 * 359.97438 * 16 15 13 18 18 C 1.38812 * 119.99637 * 179.97438 * 16 15 13 19 19 N 1.31617 * 120.00227 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47102 * 119.99824 * 20 18 16 23 23 H 1.48500 * 109.47389 * 240.00173 * 20 18 16 24 24 C 1.46926 * 120.63095 * 179.97438 * 9 7 6 25 25 H 1.08995 * 109.46821 * 60.00094 * 1 2 3 26 26 H 1.09003 * 109.46605 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47349 * 300.00084 * 1 2 3 28 28 H 1.08996 * 109.47469 * 240.00453 * 2 1 3 29 29 H 1.08999 * 109.47254 * 120.00154 * 2 1 3 30 30 H 1.09004 * 109.46824 * 60.00288 * 3 2 1 31 31 H 1.08995 * 109.47286 * 299.99621 * 3 2 1 32 32 H 1.09002 * 109.46658 * 60.00050 * 4 3 2 33 33 H 1.08999 * 109.47440 * 300.00367 * 4 3 2 34 34 H 1.08995 * 109.47338 * 60.00023 * 5 4 3 35 35 H 1.08999 * 109.47094 * 300.00365 * 5 4 3 36 36 H 1.08995 * 109.47374 * 59.99504 * 6 5 4 37 37 H 1.09006 * 109.46647 * 300.00161 * 6 5 4 38 38 H 1.08994 * 109.58642 * 353.41859 * 10 9 7 39 39 H 1.08997 * 109.58627 * 113.84647 * 10 9 7 40 40 H 1.08998 * 109.49634 * 65.31857 * 11 10 9 41 41 H 1.08999 * 109.49768 * 185.37935 * 11 10 9 42 42 H 1.08995 * 109.45857 * 301.33806 * 12 11 10 43 43 H 1.09004 * 109.45360 * 181.38686 * 12 11 10 44 44 H 0.96995 * 120.00290 * 95.10760 * 15 13 12 45 45 H 0.97005 * 120.00046 * 179.97438 * 19 18 16 46 46 H 1.08999 * 109.58612 * 6.58376 * 24 9 7 47 47 H 1.09005 * 109.70347 * 246.22039 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 6 5.6099 2.8852 0.0013 7 6 6.1122 4.3060 0.0026 8 8 5.3241 5.2277 0.0029 9 7 7.4373 4.5523 0.0033 10 6 8.4043 3.4461 0.0035 11 6 9.3758 3.6406 1.1719 12 6 10.0102 5.0301 1.0768 13 6 8.9189 6.0987 1.1730 14 1 8.3817 5.9870 2.1149 15 7 9.5301 7.4287 1.1134 16 6 10.0135 8.0118 2.2543 17 1 9.9437 7.4914 3.1980 18 6 10.5931 9.2718 2.1977 19 7 10.6778 9.9063 1.0477 20 14 11.2518 10.0676 3.7541 21 1 11.0368 9.1551 4.9058 22 1 12.7046 10.3328 3.5978 23 1 10.5382 11.3473 3.9960 24 6 7.9422 5.9321 0.0040 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6767 1.9564 -0.8900 32 1 3.9336 0.9286 -0.8892 33 1 3.9330 0.9289 0.8908 34 1 3.7162 3.3987 0.8912 35 1 3.7169 3.3992 -0.8886 36 1 5.9733 2.3717 -0.8888 37 1 5.9732 2.3709 0.8911 38 1 7.8768 2.4996 0.1206 39 1 8.9579 3.4446 -0.9355 40 1 8.8344 3.5515 2.1138 41 1 10.1555 2.8803 1.1272 42 1 10.5306 5.1272 0.1240 43 1 10.7203 5.1617 1.8932 44 1 9.5890 7.8979 0.2665 45 1 11.0825 10.7870 1.0082 46 1 7.1097 6.6257 0.1215 47 1 8.4575 6.1353 -0.9348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210933178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:14 Heat of formation + Delta-G solvation = -62.292663 kcal Electronic energy + Delta-G solvation = -22212.248893 eV Core-core repulsion = 19007.713565 eV Total energy + Delta-G solvation = -3204.535328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.01321 -37.48732 -36.50018 -34.48333 -33.54631 -32.16409 -31.24774 -29.67811 -28.16530 -25.67984 -24.52188 -23.54283 -22.03278 -21.56705 -21.21635 -19.94225 -18.67772 -17.18315 -16.92855 -16.33399 -15.55800 -15.45576 -14.80041 -14.26800 -14.20281 -14.03489 -13.93919 -13.52566 -13.40908 -13.04195 -12.98635 -12.86780 -12.51982 -12.38261 -12.18919 -11.66154 -11.63816 -11.21460 -11.04899 -10.96516 -10.92503 -10.91581 -10.80295 -10.68488 -10.62357 -10.40191 -10.33603 -10.04704 -9.73621 -9.50999 -8.91659 -8.36318 -6.98547 -5.77780 -3.07302 2.81236 3.16857 3.43107 3.48841 3.50941 4.38356 4.58587 4.62814 4.63014 4.79220 4.88968 4.92430 5.02166 5.14284 5.19798 5.21183 5.32354 5.42077 5.44602 5.51214 5.52400 5.54991 5.59178 5.70458 5.71731 5.76193 5.77142 5.82806 5.86266 5.88293 6.03900 6.05346 6.14687 6.17474 6.23635 6.27367 6.39863 6.56049 6.73303 6.89229 7.05369 7.63255 7.69767 8.37085 8.40981 9.51431 10.07027 10.42095 11.44777 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030618 B = 0.002667 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.268123 B =10495.089420 C =10844.303424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.105 4.105 6 C -0.138 4.138 7 C 0.509 3.491 8 O -0.544 6.544 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.134 4.134 12 C -0.137 4.137 13 C 0.168 3.832 14 H 0.049 0.951 15 N -0.722 5.722 16 C -0.238 4.238 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.105 3.895 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.092 0.908 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 -22.131 -3.879 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.143 4.143 6 C -0.178 4.178 7 C 0.298 3.702 8 O -0.421 6.421 9 N -0.341 5.341 10 C -0.015 4.015 11 C -0.173 4.173 12 C -0.178 4.178 13 C 0.057 3.943 14 H 0.067 0.933 15 N -0.363 5.363 16 C -0.369 4.369 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.218 1.218 24 C -0.018 4.018 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.110 0.890 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.646 -21.560 -3.704 25.268 hybrid contribution 0.692 0.615 0.554 1.079 sum -11.954 -20.945 -3.150 24.321 Atomic orbital electron populations 1.21784 0.96036 1.01429 1.01873 1.21543 0.95772 0.97100 1.01865 1.21624 0.95405 0.96533 1.02331 1.21622 0.95491 0.96686 1.01919 1.21360 0.92919 0.96352 1.03674 1.21705 0.97848 0.94328 1.03935 1.20696 0.81851 0.91610 0.76081 1.90695 1.54782 1.46604 1.50033 1.48159 1.05358 1.07753 1.72843 1.21762 0.91190 0.89207 0.99354 1.21938 0.98341 0.98984 0.97995 1.22276 0.99977 0.93336 1.02185 1.20485 0.91364 0.86707 0.95703 0.93290 1.42324 1.70517 1.14396 1.09014 1.19255 1.31045 0.98713 0.87876 0.91113 1.24757 1.01860 0.97408 0.96916 1.69673 1.50151 1.14711 1.23435 0.86111 0.78298 0.79265 0.82474 1.20562 1.21877 1.21820 1.21984 0.98776 0.81654 0.99336 0.92774 0.92943 0.92741 0.92157 0.92127 0.91898 0.91934 0.92052 0.92006 0.91183 0.91266 0.89216 0.89097 0.90242 0.91456 0.91893 0.91373 0.92488 0.91593 0.78203 0.93516 0.89010 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.13 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 4 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 5 C -0.11 -1.06 4.50 -26.73 -0.12 -1.18 16 6 C -0.14 -1.39 4.05 -27.88 -0.11 -1.51 16 7 C 0.51 7.66 7.70 -10.99 -0.08 7.58 16 8 O -0.54 -10.47 15.39 5.56 0.09 -10.38 16 9 N -0.61 -9.00 2.97 -172.74 -0.51 -9.52 16 10 C 0.11 1.21 6.34 -3.71 -0.02 1.19 16 11 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16 12 C -0.14 -2.34 5.47 -26.69 -0.15 -2.49 16 13 C 0.17 3.40 2.92 -67.79 -0.20 3.20 16 14 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 15 N -0.72 -18.20 5.13 -53.29 -0.27 -18.47 16 16 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 20 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 C 0.11 1.91 5.91 -3.68 -0.02 1.89 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.09 0.72 7.94 -51.93 -0.41 0.31 16 37 H 0.09 0.77 7.69 -51.93 -0.40 0.37 16 38 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.38 10.26 7.80 -40.82 -0.32 9.95 16 45 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.09 1.90 7.00 -51.93 -0.36 1.53 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -32.08 371.01 -9.54 -41.62 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -8.95 Total: 5.25 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -1.18 Total: -4.09 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.06 Total: -55.53 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.08 -9.54 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210933178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.668 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds