Wall clock time and date at job start Tue Mar 31 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46947 * 2 1 4 4 C 1.53001 * 109.46760 * 120.00091 * 2 1 3 5 5 C 1.52993 * 109.47107 * 65.00044 * 4 2 1 6 6 C 1.50703 * 109.46859 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00188 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99960 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99971 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.46955 * 34.99585 * 9 8 6 11 11 C 1.53002 * 109.46688 * 274.99603 * 9 8 6 12 12 C 1.52997 * 109.46817 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47127 * 60.00361 * 12 11 9 14 14 C 1.52999 * 109.46626 * 299.99539 * 13 12 11 15 15 C 1.52996 * 109.47258 * 154.99970 * 9 8 6 16 16 H 1.09000 * 109.47380 * 59.99156 * 15 9 8 17 17 N 1.46510 * 109.46858 * 299.99700 * 15 9 8 18 18 C 1.36936 * 119.99911 * 154.99804 * 17 15 9 19 19 H 1.08004 * 119.99844 * 0.02562 * 18 17 15 20 20 C 1.38806 * 120.00080 * 179.97438 * 18 17 15 21 21 N 1.31625 * 120.00101 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00007 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47268 * 89.99392 * 22 20 18 24 24 H 1.48506 * 109.47041 * 209.99672 * 22 20 18 25 25 H 1.48497 * 109.46702 * 329.99330 * 22 20 18 26 26 H 1.09000 * 109.47190 * 60.00078 * 1 2 3 27 27 H 1.09005 * 109.47609 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47405 * 300.00047 * 1 2 3 29 29 H 1.08998 * 109.46748 * 239.99784 * 2 1 3 30 30 H 1.08999 * 109.46501 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47112 * 299.99970 * 3 2 1 32 32 H 1.08998 * 109.47054 * 60.00200 * 3 2 1 33 33 H 1.09002 * 109.47023 * 304.99855 * 4 2 1 34 34 H 1.09002 * 109.46692 * 184.99906 * 4 2 1 35 35 H 1.09002 * 109.47333 * 60.00001 * 5 4 2 36 36 H 1.08994 * 109.47578 * 299.99593 * 5 4 2 37 37 H 0.96998 * 120.00021 * 359.97438 * 8 6 5 38 38 H 1.09002 * 109.47070 * 60.00104 * 11 9 8 39 39 H 1.08996 * 109.47407 * 299.99704 * 11 9 8 40 40 H 1.09001 * 109.47502 * 300.00518 * 12 11 9 41 41 H 1.09001 * 109.47289 * 180.02562 * 12 11 9 42 42 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 43 43 H 1.09000 * 109.47050 * 179.97438 * 13 12 11 44 44 H 1.09002 * 109.46719 * 180.02562 * 14 13 12 45 45 H 1.08993 * 109.47839 * 299.99931 * 14 13 12 46 46 H 0.96994 * 119.99768 * 334.99990 * 17 15 9 47 47 H 0.96997 * 119.99816 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 -2.1954 1.1879 6 6 2.1380 -2.9060 2.4182 7 8 2.7585 -2.2934 3.2612 8 7 1.8980 -4.2221 2.5816 9 6 2.3864 -4.9127 3.7778 10 1 2.3388 -4.2374 4.6320 11 6 3.8346 -5.3539 3.5564 12 6 4.3448 -6.0746 4.8058 13 6 3.4735 -7.3026 5.0779 14 6 2.0254 -6.8613 5.2992 15 6 1.5150 -6.1407 4.0492 16 1 1.5625 -6.8160 3.1948 17 7 0.1283 -5.7183 4.2611 18 6 -0.8983 -6.5908 4.0162 19 1 -0.6856 -7.5905 3.6672 20 6 -2.2121 -6.1908 4.2175 21 7 -3.1989 -7.0296 3.9826 22 14 -2.5799 -4.4619 4.8218 23 1 -2.7435 -3.5549 3.6575 24 1 -3.8317 -4.4726 5.6208 25 1 -1.4569 -3.9840 5.6677 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1262 -0.6444 1.2952 35 1 2.0698 -2.6550 0.3002 36 1 0.5489 -2.2724 1.1420 37 1 1.4014 -4.7119 1.9075 38 1 4.4554 -4.4790 3.3630 39 1 3.8822 -6.0292 2.7022 40 1 4.2972 -5.3990 5.6599 41 1 5.3767 -6.3885 4.6484 42 1 3.5211 -7.9781 4.2239 43 1 3.8373 -7.8162 5.9677 44 1 1.4047 -7.7361 5.4935 45 1 1.9778 -6.1858 6.1532 46 1 -0.0626 -4.8205 4.5749 47 1 -4.1170 -6.7499 4.1230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224706587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:41 Heat of formation + Delta-G solvation = -68.105330 kcal Electronic energy + Delta-G solvation = -23260.073722 eV Core-core repulsion = 20055.286338 eV Total energy + Delta-G solvation = -3204.787384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.86878 -38.11264 -36.52968 -34.17923 -33.76932 -31.38974 -31.12515 -29.28582 -28.07447 -27.28366 -24.55126 -23.48134 -21.99108 -20.98642 -20.16462 -19.97776 -19.45016 -17.75917 -16.66162 -16.04305 -15.68418 -15.00821 -14.79344 -14.36414 -14.19638 -13.90494 -13.56668 -13.50415 -13.30296 -13.14589 -12.62454 -12.61580 -12.32622 -12.27594 -12.19989 -11.83238 -11.39513 -11.37046 -11.02786 -10.94021 -10.88692 -10.84886 -10.72828 -10.62839 -10.58531 -10.37354 -10.13465 -9.80524 -9.62667 -9.48719 -8.96296 -8.65331 -7.31840 -5.81871 -3.17524 2.92664 3.34120 3.40478 3.43043 3.49037 4.55333 4.69665 4.74844 4.79336 4.91793 5.01677 5.10514 5.21159 5.26738 5.38551 5.43623 5.46428 5.50048 5.55581 5.59265 5.63564 5.67804 5.70872 5.78422 5.82514 5.86885 5.91162 5.96925 5.98567 6.03902 6.08571 6.24275 6.27673 6.34063 6.37923 6.39938 6.42527 6.47249 6.80066 6.81981 6.99898 7.86225 7.93830 8.37130 8.54105 9.15420 9.88359 10.08214 11.36218 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011468 B = 0.005832 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.030614 B = 4799.615253 C = 6804.058002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.097 4.097 5 C -0.145 4.145 6 C 0.511 3.489 7 O -0.553 6.553 8 N -0.713 5.713 9 C 0.137 3.863 10 H 0.082 0.918 11 C -0.122 4.122 12 C -0.114 4.114 13 C -0.119 4.119 14 C -0.133 4.133 15 C 0.178 3.822 16 H 0.059 0.941 17 N -0.747 5.747 18 C -0.243 4.243 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.932 5.932 22 Si 0.880 3.120 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.404 0.596 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.362 0.638 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.315 9.103 -6.865 17.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.135 4.135 5 C -0.185 4.185 6 C 0.297 3.703 7 O -0.431 6.431 8 N -0.363 5.363 9 C 0.031 3.969 10 H 0.100 0.900 11 C -0.162 4.162 12 C -0.152 4.152 13 C -0.157 4.157 14 C -0.174 4.174 15 C 0.068 3.932 16 H 0.077 0.923 17 N -0.389 5.389 18 C -0.373 4.373 19 H 0.109 0.891 20 C -0.188 4.188 21 N -0.580 5.580 22 Si 0.711 3.289 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.204 1.204 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.239 0.761 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.576 9.339 -6.333 17.653 hybrid contribution -0.779 0.879 0.206 1.192 sum 12.797 10.218 -6.127 17.484 Atomic orbital electron populations 1.21932 0.95217 1.02159 1.01672 1.21149 0.95974 0.96215 0.98303 1.21824 1.00886 0.96031 1.01631 1.21381 1.01467 0.92831 0.97835 1.21760 1.03244 0.96818 0.96638 1.20696 0.79383 0.82079 0.88112 1.90658 1.41470 1.66227 1.44760 1.46030 1.56892 1.09351 1.24036 1.21324 0.92904 0.94701 0.87943 0.90028 1.21851 0.95928 1.00042 0.98336 1.21483 0.98600 0.97371 0.97792 1.21573 0.95960 0.97106 1.01098 1.22191 0.94399 1.01218 0.99610 1.20450 0.84141 0.92475 0.96124 0.92268 1.42793 1.00936 1.13880 1.81258 1.19046 0.84833 0.95722 1.37717 0.89140 1.24630 0.95517 0.97243 1.01375 1.69697 0.98703 1.34631 1.54974 0.86617 0.77477 0.85975 0.78852 1.21126 1.21757 1.20399 0.92890 0.92223 0.92620 0.91268 0.92754 0.92863 0.92666 0.91262 0.91389 0.89181 0.88647 0.76097 0.91941 0.91896 0.92055 0.92304 0.92186 0.92533 0.91138 0.92599 0.80561 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.95 37.16 0.33 -1.15 16 2 C -0.10 -0.93 2.92 -90.62 -0.26 -1.19 16 3 C -0.15 -1.27 9.19 37.16 0.34 -0.93 16 4 C -0.10 -1.13 3.97 -26.73 -0.11 -1.23 16 5 C -0.14 -1.73 5.45 -27.89 -0.15 -1.88 16 6 C 0.51 7.95 7.79 -10.98 -0.09 7.86 16 7 O -0.55 -10.36 15.65 5.55 0.09 -10.28 16 8 N -0.71 -10.93 4.91 -53.80 -0.26 -11.19 16 9 C 0.14 2.21 1.98 -67.93 -0.13 2.08 16 10 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 11 C -0.12 -1.67 5.49 -26.73 -0.15 -1.82 16 12 C -0.11 -1.44 5.92 -26.73 -0.16 -1.60 16 13 C -0.12 -1.59 5.92 -26.73 -0.16 -1.74 16 14 C -0.13 -2.24 5.50 -26.71 -0.15 -2.39 16 15 C 0.18 3.22 2.30 -67.90 -0.16 3.07 16 16 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 17 N -0.75 -16.84 4.76 -53.40 -0.25 -17.09 16 18 C -0.24 -6.54 10.41 -15.06 -0.16 -6.70 16 19 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 20 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -28.60 13.97 55.49 0.78 -27.83 16 22 Si 0.88 22.07 27.74 -169.99 -4.71 17.35 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.13 6.56 -51.93 -0.34 0.79 16 37 H 0.40 5.79 8.60 -40.82 -0.35 5.44 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.36 8.43 5.66 -40.82 -0.23 8.20 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -31.10 366.80 -8.78 -39.88 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -8.85 Total: 11.11 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -1.09 Total: -7.48 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.26 Total: -56.11 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.10 -8.78 -39.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224706587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.226 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds