Wall clock time and date at job start Tue Mar 31 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53011 * 109.46613 * 2 1 4 4 C 1.52999 * 109.47196 * 119.99754 * 2 1 3 5 5 C 1.52999 * 109.46977 * 57.08040 * 4 2 1 6 6 C 1.53003 * 109.47527 * 297.07908 * 4 2 1 7 7 C 1.50704 * 109.46936 * 177.07809 * 4 2 1 8 8 O 1.21275 * 119.99989 * 346.29901 * 7 4 2 9 9 N 1.34775 * 119.99638 * 166.30247 * 7 4 2 10 10 C 1.46495 * 120.00307 * 4.50139 * 9 7 4 11 11 C 1.46502 * 119.99589 * 184.50696 * 9 7 4 12 12 C 1.53000 * 109.47043 * 90.81201 * 11 9 7 13 13 H 1.09004 * 113.03828 * 292.88811 * 12 11 9 14 14 C 1.53939 * 113.77212 * 64.64684 * 12 11 9 15 15 C 1.53943 * 86.29073 * 137.90689 * 14 12 11 16 16 N 1.47582 * 86.24191 * 336.33723 * 15 14 12 17 17 C 1.36935 * 134.49099 * 204.69855 * 16 15 14 18 18 H 1.08001 * 119.99533 * 184.55066 * 17 16 15 19 19 C 1.38810 * 120.00601 * 4.54609 * 17 16 15 20 20 N 1.31623 * 119.99472 * 5.74511 * 19 17 16 21 21 Si 1.86793 * 120.00447 * 185.74573 * 19 17 16 22 22 H 1.48505 * 109.47127 * 354.99894 * 21 19 17 23 23 H 1.48503 * 109.47466 * 114.99500 * 21 19 17 24 24 H 1.48498 * 109.47472 * 235.00029 * 21 19 17 25 25 H 1.09002 * 109.47250 * 299.99742 * 1 2 3 26 26 H 1.08995 * 109.47662 * 60.00039 * 1 2 3 27 27 H 1.09005 * 109.46871 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47270 * 240.00151 * 2 1 3 29 29 H 1.08989 * 109.47203 * 302.77251 * 3 2 1 30 30 H 1.09004 * 109.46859 * 62.77697 * 3 2 1 31 31 H 1.09000 * 109.46398 * 182.76614 * 3 2 1 32 32 H 1.08993 * 109.47128 * 189.25094 * 5 4 2 33 33 H 1.08997 * 109.46951 * 309.25129 * 5 4 2 34 34 H 1.09002 * 109.47170 * 69.24996 * 5 4 2 35 35 H 1.09006 * 109.46905 * 300.00212 * 6 4 2 36 36 H 1.08998 * 109.46894 * 59.99475 * 6 4 2 37 37 H 1.08997 * 109.47026 * 179.97438 * 6 4 2 38 38 H 1.08998 * 109.47187 * 271.45680 * 10 9 7 39 39 H 1.09003 * 109.47296 * 31.46000 * 10 9 7 40 40 H 1.09002 * 109.47407 * 151.45458 * 10 9 7 41 41 H 1.08997 * 109.47246 * 330.81108 * 11 9 7 42 42 H 1.08997 * 109.46772 * 210.81044 * 11 9 7 43 43 H 1.09003 * 113.74233 * 23.56166 * 14 12 11 44 44 H 1.08994 * 113.83878 * 252.26631 * 14 12 11 45 45 H 1.08999 * 113.77113 * 90.69724 * 15 14 12 46 46 H 1.09000 * 113.77181 * 221.98001 * 15 14 12 47 47 H 0.96998 * 119.99591 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4427 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.4709 -2.1409 1.2866 6 6 1.5909 0.0412 2.4975 7 6 3.5453 -0.7842 1.2135 8 8 4.1385 -0.5317 0.1864 9 7 4.2321 -1.1212 2.3231 10 6 3.5142 -1.5217 3.5356 11 6 5.6967 -1.0867 2.3166 12 6 6.1764 0.2936 2.7701 13 1 5.9289 1.0849 2.0624 14 6 5.8130 0.6288 4.2279 15 6 7.2343 1.2087 4.3437 16 7 7.5849 0.3166 3.2216 17 6 8.7465 -0.2582 2.7794 18 1 8.7510 -0.8313 1.8640 19 6 9.9182 -0.1041 3.5075 20 7 9.8913 0.4967 4.6783 21 14 11.5332 -0.7496 2.8260 22 1 11.2781 -1.4849 1.5612 23 1 12.4488 0.3891 2.5603 24 1 12.1567 -1.6660 3.8142 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6365 1.9706 -0.8640 30 1 1.7177 1.9419 0.9139 31 1 3.1288 1.4430 -0.0496 32 1 1.6970 -2.5977 2.2500 33 1 0.3906 -2.1030 1.1470 34 1 1.9197 -2.7333 0.4892 35 1 1.9964 1.0527 2.4708 36 1 0.5022 0.0869 2.5232 37 1 1.9539 -0.4728 3.3874 38 1 3.2918 -0.6387 4.1347 39 1 2.5835 -2.0175 3.2598 40 1 4.1331 -2.2072 4.1147 41 1 6.0604 -1.2846 1.3083 42 1 6.0810 -1.8465 2.9971 43 1 5.6451 -0.2494 4.8514 44 1 5.0250 1.3756 4.3249 45 1 7.2976 2.2689 4.0985 46 1 7.7365 0.9576 5.2780 47 1 10.7100 0.6040 5.1873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234547834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:09 Heat of formation + Delta-G solvation = 31.368752 kcal Electronic energy + Delta-G solvation = -24096.258614 eV Core-core repulsion = 20895.784750 eV Total energy + Delta-G solvation = -3200.473864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69445 -38.05653 -36.65938 -35.37626 -32.19537 -31.54789 -28.64537 -27.84102 -27.76143 -27.00151 -26.32964 -23.64402 -23.29761 -22.44665 -20.08925 -19.04669 -18.31450 -16.72699 -16.32126 -16.24321 -15.39342 -15.04164 -14.67420 -14.42390 -14.31119 -13.89752 -13.68505 -13.44993 -13.22951 -13.01583 -12.44677 -12.39640 -12.15091 -12.10226 -11.81276 -11.61916 -11.47176 -11.39173 -11.31074 -10.96624 -10.90686 -10.76718 -10.67033 -10.48509 -10.40989 -10.29539 -9.78590 -9.70242 -9.52085 -9.23396 -8.76564 -8.24508 -6.80855 -5.70854 -3.04258 2.87937 3.24718 3.41942 3.48345 3.50310 4.40376 4.50128 4.59582 4.73070 4.95215 5.08093 5.15417 5.22143 5.25146 5.36923 5.43409 5.48221 5.51563 5.58333 5.61752 5.64438 5.70359 5.72308 5.78254 5.85827 5.89874 5.94447 5.97346 6.01360 6.09903 6.18471 6.24177 6.35289 6.40519 6.44593 6.48808 6.69879 6.76708 6.88733 7.30217 7.49126 7.65431 7.69722 8.05378 8.46412 9.10021 9.76461 10.66566 11.44586 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029438 B = 0.004114 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.913691 B = 6804.249176 C = 6975.118852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.071 4.071 3 C -0.154 4.154 4 C -0.075 4.075 5 C -0.150 4.150 6 C -0.176 4.176 7 C 0.521 3.479 8 O -0.538 6.538 9 N -0.604 5.604 10 C 0.064 3.936 11 C 0.116 3.884 12 C 0.131 3.869 13 H 0.045 0.955 14 C -0.155 4.155 15 C 0.151 3.849 16 N -0.602 5.602 17 C -0.219 4.219 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.919 5.919 21 Si 0.908 3.092 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.021 0.979 46 H 0.080 0.920 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.256 -3.127 -2.386 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.211 4.211 4 C -0.078 4.078 5 C -0.207 4.207 6 C -0.233 4.233 7 C 0.309 3.691 8 O -0.415 6.415 9 N -0.337 5.337 10 C -0.078 4.078 11 C -0.007 4.007 12 C 0.023 3.977 13 H 0.062 0.938 14 C -0.194 4.194 15 C 0.026 3.974 16 N -0.329 5.329 17 C -0.347 4.347 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.567 5.567 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.098 0.902 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -20.562 -3.084 -2.913 20.995 hybrid contribution 1.058 -0.132 -0.345 1.120 sum -19.505 -3.216 -3.258 20.035 Atomic orbital electron populations 1.21995 0.95256 1.01657 1.01801 1.20872 0.94876 0.96567 0.96658 1.21975 1.02806 0.95228 1.01096 1.20736 0.91905 0.97296 0.97850 1.22099 1.01680 0.94362 1.02530 1.22645 1.01884 1.01317 0.97420 1.20511 0.89349 0.76231 0.83017 1.90669 1.70902 1.48979 1.30911 1.47751 1.07257 1.66863 1.11810 1.22412 0.97586 1.00262 0.87573 1.21793 0.76990 0.99098 1.02800 1.22576 0.86418 0.94321 0.94335 0.93792 1.23730 0.98403 1.00134 0.97086 1.22301 0.88909 0.92145 0.94045 1.46048 1.01678 1.53687 1.31444 1.19060 0.85084 1.25556 1.04951 0.90418 1.24744 0.97712 1.01284 0.96717 1.69841 1.26454 1.47983 1.12399 0.86098 0.83950 0.78013 0.78045 1.20451 1.21786 1.21803 0.92404 0.92719 0.92426 0.90491 0.93063 0.92789 0.91248 0.91401 0.90995 0.92196 0.91733 0.91735 0.89586 0.91808 0.90184 0.91207 0.90521 0.90115 0.90957 0.93569 0.96167 0.90162 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.50 37.16 0.32 -0.93 16 2 C -0.07 -0.79 1.92 -90.62 -0.17 -0.96 16 3 C -0.15 -1.87 8.54 37.16 0.32 -1.55 16 4 C -0.07 -0.82 0.30 -155.66 -0.05 -0.87 16 5 C -0.15 -1.34 8.13 37.16 0.30 -1.03 16 6 C -0.18 -1.63 7.21 37.16 0.27 -1.36 16 7 C 0.52 7.99 5.94 -10.98 -0.07 7.93 16 8 O -0.54 -10.44 14.01 5.56 0.08 -10.36 16 9 N -0.60 -8.97 2.79 -181.58 -0.51 -9.48 16 10 C 0.06 0.69 7.62 59.84 0.46 1.14 16 11 C 0.12 2.19 5.45 -4.04 -0.02 2.17 16 12 C 0.13 2.79 4.60 -66.67 -0.31 2.48 16 13 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.16 -2.95 6.88 -25.80 -0.18 -3.13 16 15 C 0.15 3.64 7.71 -2.98 -0.02 3.62 16 16 N -0.60 -15.68 3.58 -169.64 -0.61 -16.29 16 17 C -0.22 -6.24 10.52 -15.06 -0.16 -6.40 16 18 H 0.08 2.18 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 20 N -0.92 -27.51 11.29 55.49 0.63 -26.88 16 21 Si 0.91 22.59 29.56 -169.99 -5.02 17.57 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 H 0.06 0.44 6.50 -51.93 -0.34 0.10 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.42 6.18 -51.93 -0.32 0.10 16 28 H 0.08 0.99 7.85 -51.93 -0.41 0.58 16 29 H 0.05 0.56 8.14 -51.94 -0.42 0.14 16 30 H 0.05 0.60 6.22 -51.93 -0.32 0.27 16 31 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16 32 H 0.07 0.53 5.28 -51.93 -0.27 0.25 16 33 H 0.07 0.51 5.89 -51.93 -0.31 0.21 16 34 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 35 H 0.06 0.68 6.31 -51.93 -0.33 0.35 16 36 H 0.06 0.48 6.50 -51.93 -0.34 0.15 16 37 H 0.09 0.72 3.38 -51.93 -0.18 0.54 16 38 H 0.06 0.64 6.48 -51.93 -0.34 0.30 16 39 H 0.08 0.67 3.41 -51.93 -0.18 0.49 16 40 H 0.07 0.73 7.88 -51.93 -0.41 0.33 16 41 H 0.08 1.61 7.34 -51.93 -0.38 1.23 16 42 H 0.08 1.53 7.89 -51.93 -0.41 1.12 16 43 H 0.07 1.30 7.80 -51.93 -0.41 0.89 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 2.11 6.86 -51.93 -0.36 1.76 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -32.75 344.46 -7.35 -40.10 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.70 Total: -0.62 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 0.59 Total: 0.77 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.49 Total: -52.65 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.75 -7.35 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234547834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.469 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds