Wall clock time and date at job start Tue Mar 31 2020 05:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.69488 * 2 1 4 4 N 1.47955 * 109.70292 * 120.56635 * 2 1 3 5 5 C 1.48948 * 103.75034 * 96.65858 * 4 2 1 6 6 C 1.54907 * 101.44508 * 35.29558 * 5 4 2 7 7 H 1.09004 * 110.53933 * 82.81456 * 6 5 4 8 8 C 1.52994 * 110.54607 * 205.46253 * 6 5 4 9 9 N 1.46900 * 109.47343 * 182.90944 * 8 6 5 10 10 C 1.46895 * 111.00296 * 193.16965 * 9 8 6 11 11 C 1.50699 * 109.47451 * 163.52351 * 10 9 8 12 12 H 1.08008 * 119.99911 * 4.84022 * 11 10 9 13 13 C 1.37872 * 120.00479 * 184.84645 * 11 10 9 14 14 N 1.31519 * 119.99773 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00194 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47168 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47443 * 119.99740 * 15 13 11 18 18 H 1.48503 * 109.47137 * 239.99632 * 15 13 11 19 19 C 1.46902 * 110.99694 * 69.21710 * 9 8 6 20 20 C 1.54263 * 110.03312 * 43.73981 * 19 9 8 21 21 C 1.54963 * 104.16113 * 217.13612 * 20 19 9 22 22 C 1.54893 * 102.77866 * 37.88966 * 21 20 19 23 23 C 1.53879 * 110.03232 * 286.52473 * 19 9 8 24 24 O 1.43295 * 109.70529 * 239.48780 * 2 1 3 25 25 H 1.08995 * 109.47791 * 299.42934 * 1 2 3 26 26 H 1.08999 * 109.47405 * 59.43164 * 1 2 3 27 27 H 1.09006 * 109.46993 * 179.43107 * 1 2 3 28 28 H 1.09008 * 109.46799 * 180.57430 * 3 2 1 29 29 H 1.09003 * 109.46790 * 300.56610 * 3 2 1 30 30 H 1.08995 * 109.47425 * 60.57426 * 3 2 1 31 31 H 1.00894 * 111.00390 * 337.37245 * 4 2 1 32 32 H 1.09001 * 111.03125 * 277.25836 * 5 4 2 33 33 H 1.09000 * 111.06434 * 153.35491 * 5 4 2 34 34 H 1.09002 * 109.47443 * 302.91516 * 8 6 5 35 35 H 1.09002 * 109.47147 * 62.91552 * 8 6 5 36 36 H 1.08999 * 109.47205 * 283.51767 * 10 9 8 37 37 H 1.08994 * 109.47038 * 43.52261 * 10 9 8 38 38 H 0.97001 * 119.99872 * 180.02562 * 14 13 11 39 39 H 1.09003 * 110.01903 * 165.13340 * 19 9 8 40 40 H 1.08998 * 110.48633 * 335.78447 * 20 19 9 41 41 H 1.09006 * 110.48592 * 98.43047 * 20 19 9 42 42 H 1.08995 * 110.72359 * 279.57565 * 21 20 19 43 43 H 1.09003 * 110.76768 * 156.22305 * 21 20 19 44 44 H 1.08991 * 110.48757 * 203.40621 * 22 21 20 45 45 H 1.09003 * 110.48108 * 80.76126 * 22 21 20 46 46 H 1.09004 * 110.03330 * 238.56833 * 23 19 9 47 47 H 1.08999 * 110.03067 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0456 1.4405 0.0000 4 7 2.0288 -0.7084 1.1994 5 6 2.3061 -2.0864 0.7069 6 6 2.8100 -1.8036 -0.7304 7 1 3.8679 -1.5412 -0.7200 8 6 2.5678 -3.0154 -1.6325 9 7 3.1161 -2.7484 -2.9689 10 6 2.6378 -3.7396 -3.9418 11 6 2.8723 -3.2259 -5.3390 12 1 3.4007 -2.2962 -5.4910 13 6 2.4122 -3.9424 -6.4233 14 7 1.7691 -5.0746 -6.2383 15 14 2.7023 -3.3052 -8.1551 16 1 3.4436 -2.0201 -8.0920 17 1 3.4969 -4.2984 -8.9215 18 1 1.3964 -3.0903 -8.8287 19 6 4.5842 -2.7078 -2.9371 20 6 5.1265 -3.8705 -2.0804 21 6 6.3499 -3.2633 -1.3482 22 6 5.8766 -1.8241 -1.0259 23 6 5.0611 -1.4072 -2.2672 24 8 2.0131 -0.6849 -1.1622 25 1 -0.3634 0.5049 0.8950 26 1 -0.3634 0.5226 -0.8848 27 1 -0.3633 -1.0277 -0.0102 28 1 3.1356 1.4362 -0.0103 29 1 1.6760 1.9587 -0.8849 30 1 1.6928 1.9528 0.8950 31 1 1.3322 -0.7185 1.9292 32 1 1.3964 -2.6867 0.6914 33 1 3.0797 -2.5679 1.3050 34 1 3.0593 -3.8899 -1.2061 35 1 1.4967 -3.2023 -1.7100 36 1 3.1793 -4.6754 -3.8033 37 1 1.5719 -3.9109 -3.7919 38 1 1.4457 -5.5789 -7.0012 39 1 4.9813 -2.7735 -3.9500 40 1 4.3753 -4.1973 -1.3614 41 1 5.4347 -4.7009 -2.7157 42 1 7.2214 -3.2459 -2.0025 43 1 6.5643 -3.8137 -0.4321 44 1 6.7322 -1.1623 -0.8916 45 1 5.2466 -1.8200 -0.1364 46 1 5.6905 -0.8421 -2.9548 47 1 4.2033 -0.8059 -1.9662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235662948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:54 Heat of formation + Delta-G solvation = -9.605698 kcal Electronic energy + Delta-G solvation = -24497.023887 eV Core-core repulsion = 21294.773237 eV Total energy + Delta-G solvation = -3202.250649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.32001 -38.59218 -34.59332 -33.51187 -32.72483 -32.07864 -28.91753 -28.43786 -27.43438 -27.28181 -25.72731 -23.69350 -21.57709 -21.18539 -20.50681 -20.25839 -18.73171 -16.98372 -16.20556 -15.92628 -15.22479 -15.07045 -14.82301 -14.52221 -13.92555 -13.87497 -13.60423 -13.30814 -13.10999 -12.78863 -12.41957 -12.29941 -12.16857 -12.01562 -11.70163 -11.63419 -11.53957 -11.19822 -10.95767 -10.91219 -10.81556 -10.70333 -10.57097 -10.51178 -10.26674 -10.02376 -9.83224 -9.65237 -9.17934 -9.07141 -8.73946 -8.37494 -7.07621 -5.97208 -3.97195 3.34518 3.41858 3.47682 3.85604 4.12859 4.46668 4.73111 4.89011 4.97009 5.04371 5.06178 5.14552 5.22765 5.34581 5.38406 5.44342 5.50935 5.63029 5.66076 5.71642 5.79109 5.82986 5.85842 5.94627 6.02717 6.05060 6.07003 6.07684 6.17915 6.19570 6.25820 6.31236 6.36167 6.49302 6.51646 6.68624 6.85147 6.96818 7.11455 7.33037 7.39677 7.47539 7.89024 8.18096 8.32639 8.62278 9.10906 9.66465 11.13589 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016114 B = 0.005628 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.183201 B = 4973.987563 C = 5829.878579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.245 3.755 3 C -0.137 4.137 4 N -0.672 5.672 5 C 0.002 3.998 6 C 0.054 3.946 7 H 0.121 0.879 8 C 0.045 3.955 9 N -0.516 5.516 10 C 0.193 3.807 11 C -0.498 4.498 12 H 0.063 0.937 13 C 0.053 3.947 14 N -0.901 5.901 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.088 3.912 20 C -0.169 4.169 21 C -0.119 4.119 22 C -0.132 4.132 23 C -0.136 4.136 24 O -0.346 6.346 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.343 0.657 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.068 0.932 36 H -0.010 1.010 37 H 0.029 0.971 38 H 0.259 0.741 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.961 7.173 15.967 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.116 3.884 3 C -0.195 4.195 4 N -0.306 5.306 5 C -0.128 4.128 6 C -0.003 4.003 7 H 0.138 0.862 8 C -0.084 4.084 9 N -0.239 5.239 10 C 0.068 3.932 11 C -0.537 4.537 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.542 5.542 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.021 4.021 20 C -0.208 4.208 21 C -0.157 4.157 22 C -0.170 4.170 23 C -0.174 4.174 24 O -0.264 6.264 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.160 0.840 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.008 0.992 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.337 7.832 15.449 17.639 hybrid contribution -0.705 -1.130 -0.660 1.486 sum 2.633 6.702 14.789 16.449 Atomic orbital electron populations 1.22603 0.95953 1.02633 1.02833 1.22768 0.91627 0.92976 0.81006 1.21859 1.02209 0.93814 1.01582 1.64104 1.45607 1.11724 1.09152 1.23911 1.01038 0.90690 0.97173 1.24196 0.98556 0.87225 0.90309 0.86202 1.22400 1.00349 0.94115 0.91532 1.62304 1.05865 1.51472 1.04246 1.19729 0.95385 0.88117 0.89962 1.21201 1.35354 1.07071 0.90050 0.91872 1.24974 0.95432 0.95023 0.99281 1.69970 1.38851 1.14736 1.30601 0.86471 0.77849 0.78859 0.84434 1.19652 1.21222 1.21106 1.22260 0.88709 0.91823 0.99353 1.23235 0.97632 0.99898 1.00007 1.22416 0.98070 0.95736 0.99454 1.22551 0.99269 0.96680 0.98458 1.22667 1.00041 0.98670 0.96026 1.88906 1.68440 1.42136 1.26871 0.91775 0.90903 0.92346 0.91709 0.91740 0.92098 0.84033 0.92963 0.88969 0.93147 0.91335 0.99234 0.95264 0.93125 0.89144 0.90673 0.91828 0.91791 0.92461 0.92178 0.91541 0.92340 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 8.80 37.16 0.33 -1.80 16 2 C 0.25 3.26 1.45 -67.13 -0.10 3.16 16 3 C -0.14 -1.63 9.21 37.16 0.34 -1.29 16 4 N -0.67 -7.84 7.20 -101.20 -0.73 -8.57 16 5 C 0.00 0.02 7.22 -1.68 -0.01 0.01 16 6 C 0.05 0.85 2.66 -25.73 -0.07 0.78 16 7 H 0.12 1.84 1.74 -51.93 -0.09 1.75 16 8 C 0.04 0.82 4.33 -3.83 -0.02 0.80 16 9 N -0.52 -11.17 4.37 -226.75 -0.99 -12.16 16 10 C 0.19 5.05 4.67 -4.98 -0.02 5.03 16 11 C -0.50 -14.20 8.45 -34.44 -0.29 -14.49 16 12 H 0.06 1.81 7.58 -52.48 -0.40 1.41 16 13 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 15 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 C 0.09 1.68 2.77 -66.59 -0.18 1.50 16 20 C -0.17 -2.79 5.70 -25.03 -0.14 -2.94 16 21 C -0.12 -1.59 6.91 -24.70 -0.17 -1.77 16 22 C -0.13 -1.76 6.30 -25.07 -0.16 -1.92 16 23 C -0.14 -2.23 5.63 -25.61 -0.14 -2.38 16 24 O -0.35 -5.98 9.92 -35.23 -0.35 -6.33 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.34 3.25 8.38 -39.29 -0.33 2.92 16 32 H 0.05 0.63 8.05 -51.93 -0.42 0.22 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.86 5.03 -51.93 -0.26 0.60 16 35 H 0.07 1.33 7.78 -51.93 -0.40 0.93 16 36 H -0.01 -0.28 7.63 -51.93 -0.40 -0.67 16 37 H 0.03 0.83 7.75 -51.93 -0.40 0.43 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.09 1.97 7.06 -51.93 -0.37 1.61 16 40 H 0.08 1.22 4.71 -51.93 -0.24 0.98 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.86 6.27 -51.93 -0.33 0.53 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.09 1.65 4.78 -51.93 -0.25 1.40 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -30.62 347.97 -9.94 -40.56 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.09 Total: 4.41 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -0.74 Total: -13.86 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.98 Total: -47.08 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.35 Total: -6.33 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.62 -9.94 -40.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235662948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.958 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds