Wall clock time and date at job start Tue Mar 31 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47347 * 2 1 4 4 N 1.46504 * 109.47112 * 239.99461 * 2 1 3 5 5 C 1.34774 * 119.99323 * 60.00343 * 4 2 1 6 6 O 1.21580 * 120.00597 * 359.97438 * 5 4 2 7 7 N 1.34786 * 119.99366 * 179.97438 * 5 4 2 8 8 C 1.46496 * 119.99814 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47385 * 180.02562 * 8 7 5 10 10 C 1.50693 * 109.47422 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99821 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00163 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99971 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00261 * 180.02562 * 12 10 9 15 15 H 1.48510 * 109.47265 * 60.00284 * 14 12 10 16 16 H 1.48495 * 109.47464 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47353 * 300.00426 * 14 12 10 18 18 C 1.53002 * 109.46964 * 119.99951 * 2 1 3 19 19 C 1.52999 * 109.47628 * 55.00099 * 18 2 1 20 20 C 1.52997 * 109.47317 * 180.02562 * 19 18 2 21 21 C 1.53000 * 109.47060 * 59.99960 * 20 19 18 22 22 C 1.53002 * 109.47233 * 299.99657 * 21 20 19 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 21 20 24 24 H 1.08994 * 109.46768 * 300.00254 * 1 2 3 25 25 H 1.09000 * 109.46959 * 60.00236 * 1 2 3 26 26 H 1.08996 * 109.46747 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47232 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46898 * 299.99801 * 3 2 1 29 29 H 1.08998 * 109.47165 * 59.99678 * 3 2 1 30 30 H 0.96997 * 119.99996 * 239.99478 * 4 2 1 31 31 H 0.96999 * 119.99923 * 0.02562 * 7 5 4 32 32 H 1.08998 * 109.47566 * 300.00569 * 8 7 5 33 33 H 1.09003 * 109.47252 * 60.00712 * 8 7 5 34 34 H 1.08998 * 109.47125 * 300.00707 * 9 8 7 35 35 H 1.09003 * 109.46452 * 60.00090 * 9 8 7 36 36 H 0.96998 * 120.00425 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.47097 * 174.99895 * 18 2 1 38 38 H 1.08996 * 109.46929 * 59.99225 * 19 18 2 39 39 H 1.09002 * 109.46716 * 300.00030 * 19 18 2 40 40 H 1.09002 * 109.47153 * 299.99641 * 20 19 18 41 41 H 1.09001 * 109.46832 * 179.97438 * 20 19 18 42 42 H 1.08992 * 109.47399 * 59.99823 * 21 20 19 43 43 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 44 44 H 1.08993 * 109.47662 * 180.02562 * 22 21 20 45 45 H 1.09002 * 109.47075 * 300.00932 * 22 21 20 46 46 H 1.09002 * 109.47153 * 60.00231 * 23 22 21 47 47 H 1.09001 * 109.47289 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.6927 -0.2302 -2.4202 6 8 0.9934 0.7580 -2.5318 7 7 2.1424 -0.8654 -3.5207 8 6 1.7881 -0.3653 -4.8512 9 6 2.4214 -1.2608 -5.9181 10 6 2.0564 -0.7467 -7.2868 11 1 1.4351 0.1313 -7.3859 12 6 2.5154 -1.3970 -8.4125 13 7 3.2714 -2.4664 -8.2918 14 14 2.0635 -0.7594 -10.1091 15 1 2.5671 0.6288 -10.2665 16 1 2.6780 -1.6286 -11.1445 17 1 0.5868 -0.7709 -10.2652 18 6 2.0400 -0.7213 1.2493 19 6 1.4300 -2.1229 1.3138 20 6 1.9395 -2.8438 2.5634 21 6 1.5342 -2.0534 3.8091 22 6 2.1443 -0.6517 3.7447 23 6 1.6348 0.0692 2.4951 24 1 -0.3632 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 2.5761 -1.4793 -1.1071 31 1 2.7001 -1.6541 -3.4316 32 1 0.7042 -0.3746 -4.9662 33 1 2.1569 0.6540 -4.9664 34 1 3.5052 -1.2519 -5.8032 35 1 2.0522 -2.2799 -5.8027 36 1 3.5940 -2.9242 -9.0837 37 1 3.1263 -0.7995 1.2056 38 1 1.7183 -2.6858 0.4261 39 1 0.3437 -2.0446 1.3575 40 1 3.0258 -2.9221 2.5202 41 1 1.5045 -3.8422 2.6096 42 1 0.4479 -1.9751 3.8523 43 1 1.8976 -2.5668 4.6993 44 1 1.8559 -0.0887 4.6323 45 1 3.2306 -0.7300 3.7014 46 1 0.5484 0.1474 2.5383 47 1 2.0697 1.0676 2.4489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321080105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:13 Heat of formation + Delta-G solvation = -69.758597 kcal Electronic energy + Delta-G solvation = -22926.973570 eV Core-core repulsion = 19722.114495 eV Total energy + Delta-G solvation = -3204.859075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47347 -38.77587 -35.88308 -34.51410 -32.92244 -31.93820 -31.01173 -29.55597 -28.78339 -27.25399 -24.80938 -23.60906 -22.67139 -21.26955 -20.64708 -20.01338 -18.99240 -18.03949 -16.30435 -16.01018 -15.47120 -15.07006 -14.62591 -14.50914 -14.48613 -14.36414 -14.08551 -13.59980 -13.46769 -13.09927 -12.74910 -12.57324 -12.36343 -12.23992 -11.96375 -11.73914 -11.53119 -11.48033 -11.16536 -11.09987 -10.98836 -10.93645 -10.62471 -10.50879 -10.36222 -10.25746 -10.15518 -9.66848 -9.42567 -9.18621 -8.86640 -8.44932 -8.17787 -6.06829 -4.09381 3.12356 3.32990 3.36603 3.40524 3.69244 4.35197 4.40935 4.45952 4.48696 4.71944 4.86654 4.94629 5.02672 5.15646 5.22672 5.25770 5.29279 5.30144 5.37654 5.42888 5.58859 5.69777 5.76207 5.81406 5.85333 5.90602 5.93450 5.95858 6.00179 6.05444 6.09906 6.20201 6.33424 6.44359 6.48421 6.54212 6.81304 6.87469 7.10000 7.35469 7.61016 7.66968 7.92663 8.29823 8.54175 8.95951 9.11671 9.55169 11.04858 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037506 B = 0.002842 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.359350 B = 9850.878516 C =10283.542866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.200 3.800 3 C -0.166 4.166 4 N -0.746 5.746 5 C 0.701 3.299 6 O -0.594 6.594 7 N -0.741 5.741 8 C 0.141 3.859 9 C 0.013 3.987 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.086 4.086 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.114 4.114 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.391 0.609 31 H 0.391 0.609 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.399 0.406 25.152 25.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.113 3.887 3 C -0.224 4.224 4 N -0.403 5.403 5 C 0.401 3.599 6 O -0.473 6.473 7 N -0.395 5.395 8 C 0.019 3.981 9 C -0.024 4.024 10 C -0.559 4.559 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.105 4.105 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.152 4.152 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.224 0.776 31 H 0.224 0.776 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.961 1.201 24.898 25.004 hybrid contribution 0.431 -0.584 -0.921 1.173 sum -1.530 0.617 23.977 24.034 Atomic orbital electron populations 1.22345 0.94722 1.02107 1.03268 1.20013 0.94022 0.91848 0.82804 1.22316 1.00660 0.96001 1.03431 1.45337 1.57326 1.33270 1.04337 1.16056 0.80449 0.83098 0.80314 1.90809 1.42964 1.27661 1.85885 1.45571 1.55526 1.32397 1.05982 1.21544 0.99459 0.98426 0.78714 1.19312 0.96243 0.94772 0.92083 1.21024 1.31904 1.12589 0.90412 0.92296 1.24993 0.94965 0.94895 0.99451 1.69946 1.34762 1.19003 1.29710 0.86573 0.78798 0.78811 0.83350 1.20114 1.21276 1.20109 1.21380 1.00392 0.95038 0.93700 1.21680 1.01116 0.95073 0.97669 1.21540 1.00935 0.98570 0.94668 1.21541 1.00726 0.95787 0.97691 1.21534 1.00464 0.95927 0.97716 1.21678 1.01513 0.98748 0.93263 0.92315 0.90063 0.92659 0.93100 0.89965 0.92082 0.77567 0.77584 0.92912 0.92909 0.96051 0.96049 0.92829 0.90816 0.91899 0.91251 0.92098 0.92115 0.92055 0.92342 0.92109 0.92089 0.91407 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 7.67 37.16 0.28 -1.74 16 2 C 0.20 2.27 0.53 -131.81 -0.07 2.20 16 3 C -0.17 -2.02 7.91 37.16 0.29 -1.73 16 4 N -0.75 -9.63 4.84 -52.41 -0.25 -9.88 16 5 C 0.70 12.19 7.98 -86.91 -0.69 11.50 16 6 O -0.59 -12.28 12.55 5.30 0.07 -12.22 16 7 N -0.74 -13.30 5.56 -65.23 -0.36 -13.67 16 8 C 0.14 3.09 5.61 -4.04 -0.02 3.06 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 14 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.09 -0.74 1.59 -90.62 -0.14 -0.89 16 19 C -0.12 -0.96 4.59 -26.73 -0.12 -1.09 16 20 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 21 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 22 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 23 C -0.11 -0.87 4.47 -26.73 -0.12 -0.99 16 24 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 25 H 0.08 1.27 6.16 -51.93 -0.32 0.95 16 26 H 0.05 0.64 6.34 -51.93 -0.33 0.31 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.28 6.16 -51.93 -0.32 0.96 16 29 H 0.06 0.62 6.34 -51.93 -0.33 0.29 16 30 H 0.39 4.14 7.67 -40.82 -0.31 3.83 16 31 H 0.39 6.11 8.49 -40.82 -0.35 5.77 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.53 7.18 -51.93 -0.37 0.16 16 39 H 0.07 0.61 6.34 -51.93 -0.33 0.28 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.53 6.56 -51.93 -0.34 0.19 16 47 H 0.07 0.52 6.34 -51.93 -0.33 0.19 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -31.09 352.79 -9.43 -40.51 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -8.29 Total: 4.77 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -1.62 Total: -5.74 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.12 Total: -49.19 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.09 -9.43 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321080105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.246 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds