Wall clock time and date at job start Tue Mar 31 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47182 * 2 1 4 4 C 1.53007 * 109.47009 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47024 * 174.54949 * 4 3 2 6 6 C 1.50696 * 115.55198 * 297.68418 * 5 4 3 7 7 O 1.21284 * 119.99851 * 118.13906 * 6 5 4 8 8 N 1.34770 * 120.00026 * 297.86934 * 6 5 4 9 9 C 1.46501 * 119.99905 * 176.86454 * 8 6 5 10 10 C 1.53005 * 109.47189 * 179.97438 * 9 8 6 11 11 N 1.46493 * 109.47407 * 179.97438 * 10 9 8 12 12 C 1.36942 * 119.99890 * 270.00152 * 11 10 9 13 13 H 1.08001 * 119.99812 * 325.27536 * 12 11 10 14 14 C 1.38810 * 120.00281 * 145.27855 * 12 11 10 15 15 N 1.31621 * 119.99745 * 340.90856 * 14 12 11 16 16 Si 1.86798 * 120.00365 * 160.90816 * 14 12 11 17 17 H 1.48494 * 109.47274 * 89.99724 * 16 14 12 18 18 H 1.48504 * 109.47229 * 210.00047 * 16 14 12 19 19 H 1.48502 * 109.46834 * 329.99927 * 16 14 12 20 20 C 1.46498 * 120.00563 * 89.99662 * 11 10 9 21 21 C 1.52998 * 109.47039 * 87.77401 * 20 11 10 22 22 C 1.53003 * 117.49531 * 83.35358 * 5 4 3 23 23 C 1.53003 * 117.49467 * 152.01114 * 5 4 3 24 24 H 1.09006 * 109.46528 * 60.00260 * 1 2 3 25 25 H 1.09001 * 109.47209 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47088 * 300.00510 * 1 2 3 27 27 H 1.08996 * 109.47564 * 239.99681 * 2 1 3 28 28 H 1.09006 * 109.46528 * 119.99740 * 2 1 3 29 29 H 1.09003 * 109.47551 * 59.99937 * 3 2 1 30 30 H 1.08992 * 109.47250 * 299.99484 * 3 2 1 31 31 H 1.09002 * 109.46714 * 54.55501 * 4 3 2 32 32 H 1.08999 * 109.47048 * 294.55250 * 4 3 2 33 33 H 0.96998 * 120.00051 * 356.85336 * 8 6 5 34 34 H 1.08998 * 109.46924 * 299.99558 * 9 8 6 35 35 H 1.08998 * 109.47340 * 59.99854 * 9 8 6 36 36 H 1.08998 * 109.47097 * 299.99783 * 10 9 8 37 37 H 1.09005 * 109.46839 * 59.99480 * 10 9 8 38 38 H 0.97002 * 120.00367 * 180.02562 * 15 14 12 39 39 H 1.08993 * 109.47832 * 207.77899 * 20 11 10 40 40 H 1.09003 * 109.47020 * 327.78192 * 20 11 10 41 41 H 1.08998 * 109.46996 * 60.00687 * 21 20 11 42 42 H 1.08999 * 109.46954 * 180.02562 * 21 20 11 43 43 H 1.09005 * 109.47517 * 300.00642 * 21 20 11 44 44 H 1.08999 * 117.49799 * 215.00324 * 22 5 4 45 45 H 1.09005 * 117.49802 * 0.02598 * 22 5 4 46 46 H 1.09001 * 117.50068 * 359.97438 * 23 5 4 47 47 H 1.09007 * 117.49294 * 144.97541 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0802 2.8784 -0.1364 6 6 3.7019 3.5835 -1.4133 7 8 3.0187 4.5848 -1.3736 8 7 4.1272 3.1045 -2.5991 9 6 3.7032 3.7495 -3.8442 10 6 4.3228 3.0157 -5.0354 11 7 3.8983 3.6602 -6.2805 12 6 2.7563 3.2447 -6.9118 13 1 2.4766 2.2018 -6.8907 14 6 1.9584 4.1640 -7.5790 15 7 2.0656 5.4475 -7.3080 16 14 0.7324 3.5795 -8.8614 17 1 -0.5706 3.2964 -8.2078 18 1 0.5512 4.6349 -9.8904 19 1 1.2420 2.3423 -9.5057 20 6 4.6954 4.7493 -6.8504 21 6 5.7761 4.1667 -7.7634 22 6 4.1670 3.7217 1.1373 23 6 5.4453 3.2042 0.4729 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9564 0.8900 30 1 1.6768 1.9562 -0.8900 31 1 3.9337 0.8463 -0.8364 32 1 3.9330 1.0155 0.9356 33 1 4.7142 2.3328 -2.6280 34 1 2.6164 3.7135 -3.9203 35 1 4.0333 4.7882 -3.8462 36 1 5.4095 3.0521 -4.9592 37 1 3.9930 1.9768 -5.0336 38 1 1.5078 6.0899 -7.7739 39 1 4.0485 5.4092 -7.4284 40 1 5.1656 5.3149 -6.0460 41 1 5.3059 3.6012 -8.5679 42 1 6.3694 4.9770 -8.1870 43 1 6.4231 3.5068 -7.1854 44 1 3.9505 4.7865 1.0516 45 1 3.8612 3.2534 2.0729 46 1 5.9798 2.3957 0.9717 47 1 6.0700 3.9284 -0.0502 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753087137.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:06 Heat of formation + Delta-G solvation = -21.021619 kcal Electronic energy + Delta-G solvation = -22795.739071 eV Core-core repulsion = 19592.993390 eV Total energy + Delta-G solvation = -3202.745681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.96268 -37.13350 -36.15688 -34.99605 -34.14467 -31.47887 -30.21401 -29.85897 -27.48927 -24.94074 -23.99377 -22.89006 -22.58500 -21.66306 -21.07757 -20.09349 -19.01719 -16.83225 -16.54809 -15.76687 -15.40312 -15.22830 -14.72563 -14.46792 -14.23048 -13.94039 -13.68462 -13.37007 -13.18025 -12.89562 -12.70135 -12.25401 -12.14316 -12.01685 -11.63184 -11.61730 -11.41867 -11.27205 -11.11766 -11.08577 -10.84261 -10.67804 -10.64424 -10.47840 -10.36853 -10.06416 -9.94882 -9.91000 -9.59909 -9.39502 -8.54628 -8.48380 -6.64338 -5.77727 -3.37137 2.89359 3.35850 3.42908 3.44125 3.48497 3.70894 4.43998 4.48041 4.69028 4.79475 4.92271 4.95686 5.03185 5.17650 5.33272 5.37440 5.49511 5.51199 5.56229 5.66076 5.71149 5.77730 5.82213 5.90298 5.91332 5.96529 6.05040 6.07409 6.10677 6.22638 6.30107 6.32511 6.35321 6.55260 6.66305 6.79070 6.85302 6.87867 7.09376 7.27793 7.75426 7.84268 7.93697 8.50205 8.63245 9.17509 9.79431 10.34814 11.21551 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.004219 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.171008 B = 6635.528482 C = 7749.925352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.120 4.120 4 C -0.073 4.073 5 C -0.157 4.157 6 C 0.543 3.457 7 O -0.540 6.540 8 N -0.720 5.720 9 C 0.099 3.901 10 C 0.140 3.860 11 N -0.579 5.579 12 C -0.259 4.259 13 H 0.063 0.937 14 C 0.009 3.991 15 N -0.888 5.888 16 Si 0.900 3.100 17 H -0.286 1.286 18 H -0.289 1.289 19 H -0.278 1.278 20 C 0.133 3.867 21 C -0.161 4.161 22 C -0.146 4.146 23 C -0.161 4.161 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.394 0.606 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.047 0.953 38 H 0.256 0.744 39 H 0.105 0.895 40 H 0.019 0.981 41 H 0.049 0.951 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.684 -8.966 14.885 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.111 4.111 5 C -0.160 4.160 6 C 0.328 3.672 7 O -0.417 6.417 8 N -0.370 5.370 9 C -0.027 4.027 10 C 0.012 3.988 11 N -0.299 5.299 12 C -0.389 4.389 13 H 0.080 0.920 14 C -0.191 4.191 15 N -0.530 5.530 16 Si 0.730 3.270 17 H -0.212 1.212 18 H -0.215 1.215 19 H -0.203 1.203 20 C 0.007 3.993 21 C -0.221 4.221 22 C -0.184 4.184 23 C -0.198 4.198 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.227 0.773 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.122 0.878 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.076 -8.085 14.771 17.588 hybrid contribution -0.414 -0.516 -0.670 0.942 sum 4.662 -8.601 14.102 17.163 Atomic orbital electron populations 1.21775 0.95901 1.01379 1.02060 1.21514 0.96003 0.96740 1.01732 1.21592 0.94601 0.96728 1.02855 1.21084 0.95981 0.91720 1.02305 1.21576 1.02762 0.97642 0.94031 1.19442 0.79757 0.84032 0.83976 1.90707 1.38495 1.25357 1.87140 1.46150 1.50680 1.33807 1.06376 1.22442 1.01073 0.97473 0.81682 1.21070 0.95936 0.95845 0.85925 1.43851 1.25504 1.40534 1.20032 1.19078 0.99570 0.91957 1.28320 0.91977 1.25169 0.97363 0.95446 1.01096 1.69903 1.40462 1.00917 1.41757 0.86341 0.81231 0.77975 0.81485 1.21248 1.21455 1.20348 1.21068 0.92009 0.91057 0.95162 1.22286 0.99345 0.99685 1.00771 1.22964 1.00148 1.00574 0.94671 1.23072 0.89983 1.03578 1.03193 0.92460 0.92935 0.92886 0.91940 0.92322 0.91839 0.91576 0.91126 0.91200 0.77302 0.91273 0.92374 0.94312 0.93472 0.93423 0.87783 0.96218 0.93218 0.94704 0.95048 0.87910 0.88224 0.88054 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.12 -1.18 5.93 -26.73 -0.16 -1.34 16 3 C -0.12 -1.35 5.13 -26.73 -0.14 -1.49 16 4 C -0.07 -0.73 5.10 -26.73 -0.14 -0.87 16 5 C -0.16 -1.89 1.94 -155.66 -0.30 -2.19 16 6 C 0.54 9.10 6.27 -10.99 -0.07 9.03 16 7 O -0.54 -11.64 16.61 5.55 0.09 -11.55 16 8 N -0.72 -11.52 5.55 -60.29 -0.33 -11.86 16 9 C 0.10 2.01 6.00 -4.04 -0.02 1.98 16 10 C 0.14 2.82 5.79 -4.04 -0.02 2.79 16 11 N -0.58 -14.14 2.45 -173.24 -0.42 -14.57 16 12 C -0.26 -6.97 9.51 -15.06 -0.14 -7.11 16 13 H 0.06 1.65 7.90 -52.49 -0.41 1.24 16 14 C 0.01 0.25 5.03 -17.43 -0.09 0.17 16 15 N -0.89 -25.55 11.15 55.49 0.62 -24.93 16 16 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.13 3.14 5.99 -4.04 -0.02 3.11 16 21 C -0.16 -3.26 10.24 37.16 0.38 -2.88 16 22 C -0.15 -1.61 9.77 -26.69 -0.26 -1.87 16 23 C -0.16 -1.58 9.94 -26.69 -0.27 -1.85 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.94 7.45 -51.93 -0.39 0.56 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 33 H 0.39 5.02 8.47 -40.82 -0.35 4.67 16 34 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 37 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.10 2.80 5.22 -51.93 -0.27 2.53 16 40 H 0.02 0.44 8.09 -51.93 -0.42 0.02 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 1.31 7.93 -51.93 -0.41 0.90 16 45 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 382.95 15.07 5.77 5.77 Total: -1.00 -31.01 382.95 -9.18 -40.19 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.98 Total: 4.11 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -0.88 Total: -3.65 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.14 Total: -51.36 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.01 -9.18 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753087137.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.168 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds