Wall clock time and date at job start Tue Mar 31 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47172 * 2 1 4 4 C 1.53008 * 109.47143 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46959 * 60.00104 * 4 3 2 6 6 C 1.53000 * 109.46822 * 300.00038 * 4 3 2 7 7 C 1.50693 * 109.47071 * 180.02562 * 4 3 2 8 8 O 1.21286 * 120.00298 * 359.97438 * 7 4 3 9 9 N 1.34779 * 119.99938 * 179.97438 * 7 4 3 10 10 C 1.46508 * 119.99884 * 179.97438 * 9 7 4 11 11 C 1.53000 * 109.46807 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.91988 * 51.09511 * 11 10 9 13 13 C 1.55157 * 111.00230 * 175.00251 * 11 10 9 14 14 C 1.54321 * 103.10033 * 153.66249 * 13 11 10 15 15 N 1.47019 * 107.27531 * 337.71659 * 14 13 11 16 16 C 1.36931 * 125.65157 * 178.90454 * 15 14 13 17 17 H 1.07998 * 120.00396 * 180.02562 * 16 15 14 18 18 C 1.38821 * 119.99902 * 0.02562 * 16 15 14 19 19 N 1.31616 * 119.99909 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99845 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47244 * 90.00077 * 20 18 16 22 22 H 1.48500 * 109.46885 * 210.00045 * 20 18 16 23 23 H 1.48496 * 109.47319 * 329.99741 * 20 18 16 24 24 C 1.47431 * 108.70142 * 358.94050 * 15 14 13 25 25 H 1.09010 * 109.47115 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47425 * 299.99548 * 1 2 3 27 27 H 1.09003 * 109.47095 * 59.99908 * 1 2 3 28 28 H 1.09001 * 109.47096 * 239.99755 * 2 1 3 29 29 H 1.09003 * 109.47095 * 120.00092 * 2 1 3 30 30 H 1.08996 * 109.46927 * 60.00499 * 3 2 1 31 31 H 1.09003 * 109.47185 * 300.00036 * 3 2 1 32 32 H 1.09004 * 109.46732 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47142 * 299.99505 * 5 4 3 34 34 H 1.08993 * 109.47278 * 59.99998 * 5 4 3 35 35 H 1.09005 * 109.47438 * 299.99922 * 6 4 3 36 36 H 1.08997 * 109.47150 * 60.00378 * 6 4 3 37 37 H 1.09004 * 109.46927 * 180.02562 * 6 4 3 38 38 H 0.96996 * 119.99794 * 0.02562 * 9 7 4 39 39 H 1.08995 * 109.46564 * 60.00246 * 10 9 7 40 40 H 1.08993 * 109.47195 * 300.00128 * 10 9 7 41 41 H 1.09002 * 110.72219 * 35.20946 * 13 11 10 42 42 H 1.09003 * 110.71618 * 272.11558 * 13 11 10 43 43 H 1.09001 * 109.88480 * 97.13771 * 14 13 11 44 44 H 1.09003 * 109.88132 * 218.14177 * 14 13 11 45 45 H 0.96994 * 119.99831 * 179.97438 * 19 18 16 46 46 H 1.08999 * 110.36190 * 142.96411 * 24 15 14 47 47 H 1.08998 * 110.36491 * 265.18090 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0794 0.7214 -1.2502 6 6 4.0805 0.7210 1.2483 7 6 4.0723 2.8632 0.0000 8 8 3.2842 3.7851 0.0004 9 7 5.3974 3.1095 0.0001 10 6 5.8858 4.4908 0.0002 11 6 7.4158 4.4907 -0.0004 12 1 7.8047 3.8514 -0.7929 13 6 7.9719 5.9337 -0.1265 14 6 9.3550 5.8360 0.5509 15 7 9.3189 4.6746 1.4517 16 6 10.3588 4.2312 2.2243 17 1 10.2314 3.3641 2.8554 18 6 11.5770 4.8962 2.1964 19 7 11.7326 5.9527 1.4270 20 14 12.9959 4.2909 3.2499 21 1 13.7982 3.3058 2.4811 22 1 13.8556 5.4405 3.6302 23 1 12.4619 3.6454 4.4760 24 6 7.9778 4.0659 1.3847 25 1 -0.3634 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 5.1695 0.7218 -1.2509 33 1 3.7162 -0.3063 -1.2502 34 1 3.7158 1.2353 -2.1399 35 1 3.7175 1.2347 2.1386 36 1 3.7172 -0.3067 1.2482 37 1 5.1705 0.7214 1.2481 38 1 6.0277 2.3722 -0.0006 39 1 5.5224 5.0045 0.8901 40 1 5.5225 5.0046 -0.8898 41 1 7.3327 6.6409 0.4020 42 1 8.0746 6.2171 -1.1740 43 1 10.1285 5.6956 -0.2041 44 1 9.5537 6.7438 1.1205 45 1 12.5836 6.4176 1.4078 46 1 8.0505 2.9802 1.4473 47 1 7.3464 4.4500 2.1859 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753133796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:26 Heat of formation + Delta-G solvation = -43.731703 kcal Electronic energy + Delta-G solvation = -22826.283957 eV Core-core repulsion = 19622.553493 eV Total energy + Delta-G solvation = -3203.730464 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.27889 -37.80745 -36.68119 -34.66902 -32.99301 -32.23668 -29.76105 -28.26074 -27.60202 -26.71894 -25.62134 -24.15642 -22.98727 -21.07726 -20.05235 -19.96291 -18.81363 -16.96539 -16.65493 -16.11197 -15.59564 -15.28812 -14.82892 -14.58588 -14.34254 -14.03866 -13.61568 -13.48753 -13.30815 -12.84195 -12.52432 -12.46815 -12.33811 -12.08525 -11.99437 -11.89541 -11.74932 -11.39980 -11.24759 -11.11719 -10.91531 -10.84862 -10.79475 -10.65219 -10.36158 -10.14308 -9.99097 -9.87738 -9.66542 -9.49327 -8.90456 -8.60721 -6.83837 -5.71941 -3.05474 2.72084 3.26156 3.39021 3.43994 3.46161 4.44194 4.48199 4.51353 4.63598 4.89833 4.92453 5.00138 5.11903 5.22678 5.25312 5.36118 5.42746 5.45942 5.49465 5.55084 5.60520 5.61782 5.68551 5.69554 5.76038 5.87158 5.89257 5.91052 5.97039 6.06932 6.08334 6.14534 6.21394 6.35428 6.47968 6.50649 6.54032 6.70008 6.91481 7.55429 7.60668 7.62878 7.82310 8.25516 8.30862 9.21524 9.81953 10.48246 11.39856 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030214 B = 0.003123 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.515054 B = 8962.742007 C = 9567.195345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.094 4.094 4 C -0.083 4.083 5 C -0.143 4.143 6 C -0.144 4.144 7 C 0.520 3.480 8 O -0.546 6.546 9 N -0.723 5.723 10 C 0.132 3.868 11 C -0.117 4.117 12 H 0.079 0.921 13 C -0.135 4.135 14 C 0.177 3.823 15 N -0.606 5.606 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.143 3.857 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.400 0.600 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.252 0.748 46 H 0.035 0.965 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.634 -11.293 -5.201 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.132 4.132 4 C -0.086 4.086 5 C -0.200 4.200 6 C -0.201 4.201 7 C 0.305 3.695 8 O -0.423 6.423 9 N -0.374 5.374 10 C 0.008 3.992 11 C -0.137 4.137 12 H 0.097 0.903 13 C -0.174 4.174 14 C 0.053 3.947 15 N -0.333 5.333 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.017 3.983 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.235 0.765 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -17.953 -10.533 -5.143 21.441 hybrid contribution 1.213 -0.527 0.542 1.429 sum -16.741 -11.060 -4.601 20.585 Atomic orbital electron populations 1.21766 0.95915 1.01363 1.01934 1.21684 0.95824 0.96846 1.02209 1.21427 0.91849 0.96544 1.03383 1.20810 0.97501 0.92472 0.97791 1.21921 1.01311 1.00712 0.96069 1.21931 1.01445 1.00652 0.96090 1.20538 0.82297 0.91006 0.75609 1.90678 1.55451 1.46373 1.49821 1.46100 1.06929 1.09511 1.74837 1.21385 0.93782 0.82073 1.01915 1.22686 0.92025 0.99153 0.99865 0.90295 1.22855 0.99718 0.94389 1.00444 1.21139 0.90413 0.90719 0.92458 1.44474 1.07638 1.31135 1.50021 1.19051 0.89335 1.09632 1.17683 0.90501 1.24813 0.97868 0.97856 0.99990 1.69964 1.24246 1.20933 1.41812 0.86116 0.82325 0.77554 0.79753 1.21615 1.21665 1.20709 1.21649 0.87821 0.96052 0.92790 0.92903 0.92740 0.92774 0.91720 0.91658 0.91274 0.91346 0.92034 0.91136 0.92124 0.91996 0.91159 0.91915 0.76493 0.91437 0.91786 0.92239 0.92038 0.93588 0.93918 0.93749 0.94723 0.96337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.15 0.37 -0.70 16 2 C -0.13 -0.95 5.23 -26.74 -0.14 -1.09 16 3 C -0.09 -0.91 3.56 -26.73 -0.10 -1.01 16 4 C -0.08 -0.81 0.64 -155.66 -0.10 -0.91 16 5 C -0.14 -1.15 8.02 37.16 0.30 -0.85 16 6 C -0.14 -1.24 8.02 37.16 0.30 -0.94 16 7 C 0.52 6.97 6.48 -10.99 -0.07 6.90 16 8 O -0.55 -9.38 15.98 5.55 0.09 -9.29 16 9 N -0.72 -9.26 5.29 -60.29 -0.32 -9.58 16 10 C 0.13 1.94 5.14 -4.04 -0.02 1.91 16 11 C -0.12 -1.95 3.07 -88.21 -0.27 -2.22 16 12 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 13 C -0.14 -2.48 6.40 -24.90 -0.16 -2.64 16 14 C 0.18 4.29 5.37 -3.07 -0.02 4.28 16 15 N -0.61 -15.41 3.40 -169.76 -0.58 -15.98 16 16 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 17 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 19 N -0.92 -27.15 10.31 55.49 0.57 -26.58 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.14 2.87 6.68 -2.26 -0.02 2.86 16 25 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 29 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 30 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.07 0.74 8.10 -51.93 -0.42 0.31 16 32 H 0.06 0.47 7.57 -51.93 -0.39 0.08 16 33 H 0.07 0.46 6.43 -51.93 -0.33 0.13 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.49 6.43 -51.93 -0.33 0.15 16 37 H 0.06 0.53 7.56 -51.93 -0.39 0.13 16 38 H 0.40 4.44 7.31 -40.82 -0.30 4.14 16 39 H 0.07 1.08 7.98 -51.93 -0.41 0.66 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 1.23 7.38 -51.93 -0.38 0.84 16 44 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.02 0.39 7.93 -51.93 -0.41 -0.02 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -31.91 362.75 -8.59 -40.51 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.63 Total: -0.31 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -0.17 Total: -1.27 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.32 Total: -52.14 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.91 -8.59 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753133796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.224 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds