Wall clock time and date at job start Tue Mar 31 2020 05:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99800 * 2 1 4 4 C 1.52992 * 109.47110 * 269.99838 * 3 2 1 5 5 N 1.46506 * 109.47110 * 179.97438 * 4 3 2 6 6 C 1.36933 * 120.00042 * 180.02562 * 5 4 3 7 7 H 1.07993 * 120.00310 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99958 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99634 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00248 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47195 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47326 * 119.99798 * 10 8 6 13 13 H 1.48500 * 109.46992 * 239.99618 * 10 8 6 14 14 C 1.34773 * 120.00231 * 180.02562 * 2 1 3 15 15 O 1.21283 * 120.00360 * 179.72577 * 14 2 1 16 16 C 1.50706 * 120.00081 * 359.97438 * 14 2 1 17 17 C 1.52998 * 109.46708 * 299.72691 * 16 14 2 18 18 C 1.53006 * 109.47002 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.46924 * 59.99949 * 18 17 16 20 20 C 1.52996 * 109.47303 * 179.97438 * 19 18 17 21 21 C 1.53008 * 109.47007 * 60.00054 * 19 18 17 22 22 C 1.53001 * 109.47149 * 300.00180 * 19 18 17 23 23 C 1.52996 * 109.47350 * 60.00080 * 22 19 18 24 24 H 1.09001 * 109.47443 * 269.99328 * 1 2 3 25 25 H 1.08999 * 109.47479 * 30.00306 * 1 2 3 26 26 H 1.09006 * 109.47080 * 149.99714 * 1 2 3 27 27 H 1.08995 * 109.47161 * 30.00561 * 3 2 1 28 28 H 1.09002 * 109.46900 * 149.99872 * 3 2 1 29 29 H 1.09003 * 109.47542 * 300.00121 * 4 3 2 30 30 H 1.09002 * 109.47212 * 60.00224 * 4 3 2 31 31 H 0.97002 * 119.99840 * 0.02562 * 5 4 3 32 32 H 0.97000 * 119.99572 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.47012 * 59.72084 * 16 14 2 34 34 H 1.09002 * 109.47539 * 299.99802 * 17 16 14 35 35 H 1.09005 * 109.47120 * 60.00102 * 17 16 14 36 36 H 1.09002 * 109.47088 * 300.00416 * 18 17 16 37 37 H 1.08996 * 109.46952 * 179.97438 * 18 17 16 38 38 H 1.08995 * 109.47371 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.47164 * 300.00512 * 20 19 18 40 40 H 1.08994 * 109.47045 * 60.00068 * 20 19 18 41 41 H 1.09002 * 109.47164 * 300.00057 * 21 19 18 42 42 H 1.09000 * 109.47136 * 60.00229 * 21 19 18 43 43 H 1.08995 * 109.46766 * 180.02562 * 21 19 18 44 44 H 1.08994 * 109.47054 * 299.99843 * 22 19 18 45 45 H 1.09005 * 109.46947 * 179.97438 * 22 19 18 46 46 H 1.09000 * 109.47441 * 180.02562 * 23 22 19 47 47 H 1.09002 * 109.47087 * 59.99590 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4424 5 7 3.1844 2.9795 -1.4424 6 6 3.5261 3.5728 -2.6283 7 1 3.2558 3.1054 -3.5636 8 6 4.2201 4.7750 -2.6283 9 7 4.5492 5.3449 -1.4883 10 14 4.6858 5.5848 -4.2459 11 1 4.2030 4.7493 -5.3747 12 1 4.0625 6.9303 -4.3235 13 1 6.1627 5.7181 -4.3256 14 6 2.1388 -1.1671 -0.0005 15 8 3.3516 -1.1672 -0.0055 16 6 1.3854 -2.4723 -0.0005 17 6 0.5114 -2.5566 1.2525 18 6 -0.2540 -3.8814 1.2522 19 6 0.7398 -5.0446 1.2444 20 6 -0.0255 -6.3694 1.2448 21 6 1.6252 -4.9673 2.4899 22 6 1.6138 -4.9603 -0.0086 23 6 2.3792 -3.6355 -0.0084 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5139 28 1 3.1498 1.1385 0.5139 29 1 3.0415 0.9508 -1.9563 30 1 1.5000 1.8408 -1.9563 31 1 3.4269 3.3996 -0.6023 32 1 5.0344 6.1848 -1.4883 33 1 0.7546 -2.5277 -0.8877 34 1 1.1421 -2.5011 2.1398 35 1 -0.1969 -1.7281 1.2578 36 1 -0.8847 -3.9365 0.3649 37 1 -0.8763 -3.9416 2.1451 38 1 0.6825 -7.1981 1.2397 39 1 -0.6479 -6.4292 2.1377 40 1 -0.6565 -6.4247 0.3578 41 1 2.1705 -4.0235 2.4901 42 1 1.0026 -5.0274 3.3826 43 1 2.3335 -5.7957 2.4841 44 1 0.9831 -5.0153 -0.8958 45 1 2.3222 -5.7887 -0.0139 46 1 3.0015 -3.5752 -0.9012 47 1 3.0099 -3.5805 0.8790 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753266045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:17 Heat of formation + Delta-G solvation = -45.863514 kcal Electronic energy + Delta-G solvation = -23053.933064 eV Core-core repulsion = 19850.110158 eV Total energy + Delta-G solvation = -3203.822906 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.64191 -38.74068 -35.89675 -34.47068 -33.43867 -31.38400 -30.91417 -28.43246 -27.58650 -27.18366 -26.13088 -23.78520 -22.89154 -22.08130 -21.08311 -19.10861 -18.61525 -17.15312 -16.87380 -15.99924 -15.63341 -15.07791 -14.99306 -14.55830 -14.23424 -14.00320 -13.68929 -13.48171 -13.34326 -13.10239 -12.87965 -12.64962 -12.58073 -12.38740 -12.30192 -11.96884 -11.89212 -11.60145 -11.28866 -11.19834 -11.11389 -10.95751 -10.86023 -10.65273 -10.59337 -10.38048 -10.12938 -10.05073 -9.74180 -9.41410 -8.84966 -8.43564 -6.90124 -5.73615 -3.02599 2.81865 3.15389 3.45909 3.51399 3.53891 4.33031 4.35168 4.45701 4.63868 4.76830 4.81910 4.86424 5.04719 5.09645 5.16335 5.28320 5.31008 5.35701 5.38541 5.41751 5.50874 5.54311 5.57714 5.63239 5.65498 5.68064 5.73300 5.81844 5.83931 5.88148 5.90261 5.98781 6.05912 6.08006 6.09851 6.17301 6.22265 6.36920 6.61099 6.78765 6.96142 7.57923 7.73416 8.38255 8.45324 9.55904 10.12506 10.47677 11.49493 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040591 B = 0.002943 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.642595 B = 9512.820496 C = 9676.490143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.107 3.893 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.236 4.236 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.512 3.488 15 O -0.533 6.533 16 C -0.102 4.102 17 C -0.125 4.125 18 C -0.105 4.105 19 C -0.067 4.067 20 C -0.141 4.141 21 C -0.146 4.146 22 C -0.107 4.107 23 C -0.101 4.101 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.642 -22.622 7.977 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.345 5.345 3 C -0.015 4.015 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.367 4.367 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.300 3.700 15 O -0.409 6.409 16 C -0.123 4.123 17 C -0.162 4.162 18 C -0.142 4.142 19 C -0.067 4.067 20 C -0.198 4.198 21 C -0.203 4.203 22 C -0.145 4.145 23 C -0.139 4.139 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.979 -22.587 7.798 27.192 hybrid contribution 0.258 0.753 -0.670 1.041 sum -12.720 -21.834 7.128 26.255 Atomic orbital electron populations 1.21943 0.80042 1.03276 1.01387 1.47808 1.06756 1.06385 1.73590 1.21691 0.97454 0.83340 0.99056 1.20900 0.95011 0.89329 0.93274 1.42228 1.67129 1.21600 1.06588 1.19255 1.29234 1.02268 0.85992 0.91171 1.24756 1.01324 0.98080 0.96949 1.69676 1.45121 1.19570 1.23891 0.86086 0.77925 0.79120 0.82897 1.20561 1.21847 1.21810 1.20692 0.88051 0.85230 0.76027 1.90723 1.13964 1.87238 1.48993 1.21303 0.97969 0.92775 1.00301 1.21847 0.98813 0.98452 0.97106 1.21577 0.97161 0.93513 1.01959 1.20569 0.95481 0.94973 0.95726 1.21860 0.99892 0.96500 1.01561 1.21988 0.99426 1.02286 0.96648 1.21617 0.98357 0.97412 0.97110 1.21387 0.96898 0.92050 1.03585 0.92444 0.90766 0.91065 0.90604 0.89799 0.95999 0.96518 0.78278 0.93548 0.88840 0.91164 0.90380 0.91803 0.91746 0.92756 0.92798 0.92748 0.91793 0.92937 0.92840 0.91971 0.91748 0.91238 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 8.81 59.84 0.53 1.29 16 2 N -0.61 -8.83 2.87 -181.58 -0.52 -9.35 16 3 C 0.11 1.91 5.52 -4.04 -0.02 1.89 16 4 C 0.14 3.13 6.58 -4.04 -0.03 3.11 16 5 N -0.73 -19.58 5.60 -59.91 -0.34 -19.92 16 6 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 7 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 8 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 9 N -0.93 -29.03 13.06 55.49 0.72 -28.31 16 10 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 C 0.51 7.82 7.07 -10.98 -0.08 7.74 16 15 O -0.53 -10.57 15.57 5.56 0.09 -10.49 16 16 C -0.10 -1.09 1.72 -91.77 -0.16 -1.25 16 17 C -0.12 -1.06 4.57 -26.73 -0.12 -1.18 16 18 C -0.10 -0.72 4.73 -26.73 -0.13 -0.85 16 19 C -0.07 -0.49 0.77 -154.51 -0.12 -0.61 16 20 C -0.14 -0.88 8.47 37.16 0.31 -0.56 16 21 C -0.15 -1.13 7.78 37.16 0.29 -0.84 16 22 C -0.11 -0.88 4.73 -26.73 -0.13 -1.01 16 23 C -0.10 -1.10 4.22 -26.73 -0.11 -1.21 16 24 H 0.06 0.47 6.95 -51.93 -0.36 0.10 16 25 H 0.07 0.74 8.07 -51.93 -0.42 0.33 16 26 H 0.07 0.56 6.01 -51.93 -0.31 0.25 16 27 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 28 H 0.08 1.67 7.43 -51.93 -0.39 1.28 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.38 10.65 7.67 -40.82 -0.31 10.33 16 32 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.09 0.89 7.39 -51.93 -0.38 0.51 16 34 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 35 H 0.08 0.59 4.56 -51.93 -0.24 0.35 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 47 H 0.07 0.87 6.39 -51.93 -0.33 0.54 16 LS Contribution 356.02 15.07 5.37 5.37 Total: -1.00 -33.91 356.02 -8.07 -41.98 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.36 Total: 3.80 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -0.01 Total: -1.11 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.13 Total: -57.58 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.91 -8.07 -41.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753266045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.880 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds