Wall clock time and date at job start Tue Mar 31 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46667 * 2 1 4 4 C 1.52994 * 109.47062 * 119.99909 * 2 1 3 5 5 C 1.52999 * 109.47216 * 175.00435 * 4 2 1 6 6 C 1.53003 * 109.47419 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47277 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47282 * 180.02562 * 7 6 5 9 9 O 1.21277 * 120.00130 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00211 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00059 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47130 * 179.97438 * 11 10 8 13 13 H 1.09003 * 112.77560 * 56.27788 * 12 11 10 14 14 C 1.53755 * 113.55568 * 187.13196 * 12 11 10 15 15 C 1.53489 * 83.25826 * 140.98933 * 14 12 11 16 16 N 1.47063 * 87.98878 * 333.76510 * 15 14 12 17 17 C 1.36933 * 136.06263 * 207.08610 * 16 15 14 18 18 H 1.07993 * 120.00338 * 173.06400 * 17 16 15 19 19 C 1.38819 * 119.99623 * 352.79306 * 17 16 15 20 20 N 1.31619 * 119.99806 * 352.77041 * 19 17 16 21 21 Si 1.86799 * 119.99923 * 172.77398 * 19 17 16 22 22 H 1.48502 * 109.46853 * 94.80292 * 21 19 17 23 23 H 1.48497 * 109.47179 * 214.80274 * 21 19 17 24 24 H 1.48496 * 109.47153 * 334.80488 * 21 19 17 25 25 H 1.08997 * 109.47394 * 299.99414 * 1 2 3 26 26 H 1.08998 * 109.47330 * 60.00136 * 1 2 3 27 27 H 1.09003 * 109.47031 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47098 * 240.00154 * 2 1 3 29 29 H 1.08998 * 109.47135 * 299.99984 * 3 2 1 30 30 H 1.09006 * 109.46879 * 60.00264 * 3 2 1 31 31 H 1.09001 * 109.46726 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47343 * 55.00029 * 4 2 1 33 33 H 1.09002 * 109.47758 * 295.00381 * 4 2 1 34 34 H 1.08994 * 109.47120 * 59.99796 * 5 4 2 35 35 H 1.09000 * 109.46844 * 299.99813 * 5 4 2 36 36 H 1.08999 * 109.46913 * 60.00167 * 6 5 4 37 37 H 1.09000 * 109.46920 * 299.99718 * 6 5 4 38 38 H 1.09003 * 109.47070 * 59.99741 * 7 6 5 39 39 H 1.09002 * 109.47080 * 300.00675 * 7 6 5 40 40 H 0.97004 * 119.99926 * 359.97438 * 10 8 7 41 41 H 1.08994 * 109.47377 * 59.99712 * 11 10 8 42 42 H 1.09000 * 109.46871 * 299.99555 * 11 10 8 43 43 H 1.09002 * 114.39060 * 27.42145 * 14 12 11 44 44 H 1.09007 * 114.26448 * 254.54500 * 14 12 11 45 45 H 1.09001 * 113.46658 * 218.98084 * 15 14 12 46 46 H 1.08996 * 113.52345 * 88.55540 * 15 14 12 47 47 H 0.97000 * 119.99955 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1880 6 6 4.0748 -1.5527 2.4370 7 6 5.5996 -1.6630 2.3755 8 6 6.1019 -2.3745 3.6052 9 8 5.3175 -2.7562 4.4478 10 7 7.4227 -2.5866 3.7689 11 6 7.9109 -3.2787 4.9642 12 6 9.4357 -3.3889 4.9027 13 1 9.9246 -2.4210 4.7912 14 6 10.0352 -4.2518 6.0253 15 6 10.9727 -4.7318 4.9088 16 7 9.9119 -4.3992 3.9460 17 6 9.5364 -4.8344 2.7032 18 1 8.6202 -4.4746 2.2590 19 6 10.3363 -5.7340 2.0118 20 7 11.5210 -6.0592 2.4843 21 14 9.7315 -6.4828 0.4110 22 1 10.2441 -5.6864 -0.7328 23 1 10.2229 -7.8799 0.3012 24 1 8.2466 -6.4774 0.3919 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8901 31 1 3.1300 1.4426 0.0005 32 1 1.6054 -1.7198 1.2952 33 1 1.7517 -0.1584 2.1370 34 1 3.9994 0.1676 1.1421 35 1 3.8532 -1.3939 0.3003 36 1 3.6403 -2.5513 2.4824 37 1 3.7864 -0.9902 3.3249 38 1 6.0346 -0.6645 2.3297 39 1 5.8877 -2.2257 1.4874 40 1 8.0501 -2.2816 3.0948 41 1 7.4764 -4.2773 5.0088 42 1 7.6224 -2.7169 5.8526 43 1 9.3650 -5.0215 6.4081 44 1 10.5312 -3.6825 6.8115 45 1 11.1959 -5.7976 4.9578 46 1 11.8671 -4.1188 4.7981 47 1 12.0801 -6.6874 2.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754498395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:49 Heat of formation + Delta-G solvation = -22.604157 kcal Electronic energy + Delta-G solvation = -22081.889104 eV Core-core repulsion = 18879.074799 eV Total energy + Delta-G solvation = -3202.814305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.44937 -38.13296 -37.35182 -34.15242 -33.84674 -32.24128 -29.83582 -28.04428 -27.50607 -27.39407 -24.56121 -23.49229 -22.01974 -21.12370 -20.27736 -19.88395 -19.17625 -17.02541 -16.30367 -16.06614 -15.60118 -15.39393 -15.00556 -14.44111 -14.35676 -14.14872 -13.76108 -13.52856 -13.26630 -12.90204 -12.61835 -12.49509 -12.41627 -11.89235 -11.85039 -11.57295 -11.49036 -11.32801 -11.20127 -10.99176 -10.87516 -10.79989 -10.78052 -10.62787 -10.55961 -10.47693 -10.03515 -9.86550 -9.55712 -9.15815 -8.80233 -8.51276 -6.92661 -5.81857 -3.12685 3.03086 3.35055 3.41582 3.43335 3.62857 4.41023 4.51684 4.64693 4.69377 4.95464 4.98960 5.06545 5.20085 5.31444 5.33676 5.36918 5.40671 5.45624 5.53145 5.55260 5.59339 5.65185 5.70256 5.73782 5.79751 5.84965 5.91093 5.91737 5.99751 6.07363 6.12163 6.15403 6.29238 6.31990 6.37540 6.39716 6.57936 6.73848 6.94803 7.18295 7.37164 7.51179 7.93134 7.97150 8.64031 8.99625 9.66904 10.61229 11.36686 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017646 B = 0.003207 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.366457 B = 8728.779689 C = 9930.545759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.149 4.149 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.102 4.102 7 C -0.142 4.142 8 C 0.508 3.492 9 O -0.556 6.556 10 N -0.716 5.716 11 C 0.122 3.878 12 C 0.126 3.874 13 H 0.047 0.953 14 C -0.162 4.162 15 C 0.158 3.842 16 N -0.601 5.601 17 C -0.216 4.216 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.917 5.917 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.403 0.597 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.030 0.970 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.313 12.920 -1.573 19.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.140 4.140 7 C -0.182 4.182 8 C 0.294 3.706 9 O -0.435 6.435 10 N -0.366 5.366 11 C -0.003 4.003 12 C 0.018 3.982 13 H 0.064 0.936 14 C -0.201 4.201 15 C 0.033 3.967 16 N -0.327 5.327 17 C -0.343 4.343 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.564 5.564 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.238 0.762 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.047 0.953 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.826 12.430 -1.281 19.390 hybrid contribution 0.296 -0.257 -1.353 1.409 sum -14.530 12.173 -2.634 19.137 Atomic orbital electron populations 1.21849 0.95490 1.01649 1.01534 1.21142 0.95496 0.96433 0.98673 1.21899 1.01342 0.95971 1.01434 1.21648 0.95583 1.00500 0.97520 1.21682 0.95422 1.00672 0.98153 1.21319 0.93091 1.01635 0.97938 1.21688 0.97822 1.01556 0.97136 1.20665 0.82394 0.79578 0.87972 1.90651 1.55491 1.52321 1.44996 1.46025 1.07238 1.58853 1.24458 1.21751 0.95343 0.96870 0.86314 1.22452 0.91250 0.93775 0.90701 0.93578 1.23699 1.00644 0.99652 0.96113 1.21899 0.90777 0.99750 0.84313 1.45811 1.32261 1.37929 1.16663 1.18876 1.03328 1.21164 0.90944 0.90167 1.24822 0.95897 1.01022 0.98642 1.69856 1.09339 1.37164 1.40034 0.86174 0.78054 0.78752 0.83244 1.21627 1.21574 1.20540 0.92786 0.92930 0.92752 0.91303 0.93064 0.92808 0.92305 0.91935 0.91971 0.91792 0.91967 0.91327 0.91454 0.89311 0.88957 0.76243 0.91299 0.92433 0.90230 0.92266 0.92269 0.95261 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 2 C -0.10 -0.77 2.92 -90.62 -0.26 -1.04 16 3 C -0.15 -1.09 8.95 37.16 0.33 -0.76 16 4 C -0.11 -1.01 4.68 -26.73 -0.13 -1.13 16 5 C -0.12 -1.14 4.97 -26.73 -0.13 -1.27 16 6 C -0.10 -1.20 4.50 -26.73 -0.12 -1.32 16 7 C -0.14 -1.76 5.70 -27.89 -0.16 -1.92 16 8 C 0.51 8.48 7.83 -10.99 -0.09 8.40 16 9 O -0.56 -11.15 15.98 5.56 0.09 -11.06 16 10 N -0.72 -12.17 5.33 -60.30 -0.32 -12.50 16 11 C 0.12 2.23 5.53 -4.04 -0.02 2.21 16 12 C 0.13 2.43 4.11 -72.27 -0.30 2.13 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 14 C -0.16 -2.94 8.04 -26.09 -0.21 -3.15 16 15 C 0.16 3.62 7.19 -8.52 -0.06 3.56 16 16 N -0.60 -14.65 3.63 -176.87 -0.64 -15.29 16 17 C -0.22 -5.77 10.54 -15.06 -0.16 -5.93 16 18 H 0.08 2.06 7.62 -52.49 -0.40 1.66 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 20 N -0.92 -26.96 11.87 55.49 0.66 -26.30 16 21 Si 0.91 21.85 29.56 -169.99 -5.02 16.83 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.07 0.84 8.10 -51.93 -0.42 0.41 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.40 6.52 8.47 -40.82 -0.35 6.17 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.43 8.13 -51.93 -0.42 1.01 16 44 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 45 H 0.06 1.49 7.65 -51.93 -0.40 1.10 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -31.40 377.13 -9.60 -41.00 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -8.99 Total: 2.85 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.06 Total: -1.21 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.30 Total: -54.09 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.40 -9.60 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754498395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.398 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds