Wall clock time and date at job start Tue Mar 31 2020 05:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47152 * 2 1 4 4 C 1.52995 * 109.46901 * 240.00405 * 2 1 3 5 5 C 1.50692 * 109.47073 * 120.00083 * 2 1 3 6 6 O 1.21280 * 120.00318 * 359.97438 * 5 2 1 7 7 N 1.34780 * 119.99887 * 180.02562 * 5 2 1 8 8 C 1.46498 * 119.99889 * 180.02562 * 7 5 2 9 9 C 1.52998 * 109.47075 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.49987 * 60.05956 * 9 8 7 11 11 C 1.53039 * 109.52798 * 180.14410 * 9 8 7 12 12 C 1.53034 * 109.54372 * 181.33129 * 11 9 8 13 13 C 1.53194 * 109.31286 * 298.63743 * 12 11 9 14 14 N 1.46920 * 108.77691 * 54.63067 * 13 12 11 15 15 C 1.36940 * 120.63476 * 126.41375 * 14 13 12 16 16 H 1.08007 * 119.99467 * 332.49337 * 15 14 13 17 17 C 1.38813 * 120.00404 * 152.48636 * 15 14 13 18 18 N 1.31621 * 119.99867 * 159.71715 * 17 15 14 19 19 Si 1.86795 * 119.99814 * 339.72116 * 17 15 14 20 20 H 1.48507 * 109.47192 * 94.91430 * 19 17 15 21 21 H 1.48506 * 109.46958 * 214.91176 * 19 17 15 22 22 H 1.48501 * 109.47463 * 334.91299 * 19 17 15 23 23 C 1.46924 * 118.73880 * 306.39445 * 14 13 12 24 24 H 1.09005 * 109.47184 * 300.00371 * 1 2 3 25 25 H 1.08997 * 109.47332 * 59.99639 * 1 2 3 26 26 H 1.08998 * 109.47441 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47061 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47018 * 299.99959 * 3 2 1 29 29 H 1.08995 * 109.46870 * 59.99914 * 3 2 1 30 30 H 1.09002 * 109.47092 * 299.99985 * 4 2 1 31 31 H 1.09001 * 109.47648 * 59.99808 * 4 2 1 32 32 H 1.08999 * 109.47352 * 180.02562 * 4 2 1 33 33 H 0.97000 * 120.00119 * 359.97438 * 7 5 2 34 34 H 1.08999 * 109.47412 * 60.00073 * 8 7 5 35 35 H 1.09004 * 109.47340 * 299.99411 * 8 7 5 36 36 H 1.08996 * 109.47579 * 299.93824 * 10 9 8 37 37 H 1.09001 * 109.46897 * 59.93917 * 10 9 8 38 38 H 1.09006 * 109.47335 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.45970 * 61.30745 * 11 9 8 40 40 H 1.09002 * 109.45930 * 301.35908 * 11 9 8 41 41 H 1.08999 * 109.50277 * 178.68563 * 12 11 9 42 42 H 1.09000 * 109.49660 * 58.58170 * 12 11 9 43 43 H 1.08996 * 109.58688 * 174.42052 * 13 12 11 44 44 H 1.09004 * 109.58602 * 294.84269 * 13 12 11 45 45 H 0.96997 * 119.99652 * 180.02562 * 18 17 15 46 46 H 1.09003 * 109.58790 * 173.39444 * 23 14 13 47 47 H 1.09000 * 109.58965 * 293.67621 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0323 -0.7104 1.2304 6 8 1.2442 -1.1709 2.0290 7 7 3.3574 -0.8331 1.4439 8 6 3.8457 -1.5242 2.6398 9 6 5.3757 -1.5241 2.6398 10 6 5.8863 -0.0818 2.6420 11 6 5.8872 -2.2489 3.8868 12 6 7.4172 -2.2201 3.9042 13 6 7.9518 -2.9495 2.6676 14 7 7.3505 -2.3503 1.4685 15 6 8.1389 -1.8983 0.4441 16 1 9.1452 -1.5615 0.6453 17 6 7.6449 -1.8731 -0.8530 18 7 8.2067 -1.0979 -1.7562 19 14 6.1828 -2.9393 -1.3163 20 1 4.9339 -2.1439 -1.2013 21 1 6.3400 -3.4145 -2.7145 22 1 6.1119 -4.1070 -0.4016 23 6 5.8871 -2.2456 1.3890 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6766 -1.7488 -1.2493 31 1 1.6766 -0.2073 -2.1393 32 1 3.1299 -0.7216 -1.2491 33 1 3.9877 -0.4644 0.8054 34 1 3.4829 -2.5520 2.6391 35 1 3.4820 -1.0110 3.5300 36 1 5.5242 0.4332 1.7523 37 1 5.5222 0.4311 3.5322 38 1 6.9764 -0.0822 2.6425 39 1 5.5437 -3.2832 3.8722 40 1 5.5045 -1.7521 4.7783 41 1 7.7803 -2.7161 4.8043 42 1 7.7617 -1.1861 3.8938 43 1 9.0360 -2.8467 2.6230 44 1 7.6846 -4.0049 2.7219 45 1 7.8613 -1.0801 -2.6624 46 1 5.6091 -1.6784 0.5007 47 1 5.4517 -3.2434 1.3364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754733920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:22 Heat of formation + Delta-G solvation = -38.258417 kcal Electronic energy + Delta-G solvation = -24574.102316 eV Core-core repulsion = 21370.609192 eV Total energy + Delta-G solvation = -3203.493125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.19273 -38.75679 -35.59801 -34.94268 -33.22777 -31.48252 -30.62289 -27.38870 -27.30022 -26.72614 -25.92707 -25.35482 -23.02250 -22.05505 -20.50799 -19.31554 -18.28744 -16.90025 -16.60742 -15.94652 -15.43237 -15.06503 -14.47154 -14.16130 -14.13085 -13.86924 -13.59580 -13.52064 -13.47924 -12.97003 -12.50898 -12.40157 -12.21889 -12.16952 -11.98309 -11.95057 -11.74360 -11.66076 -11.22066 -11.05997 -10.99152 -10.98520 -10.76440 -10.50809 -10.40022 -10.05313 -9.88960 -9.66081 -9.50937 -9.43721 -8.82049 -8.65776 -6.99944 -6.00338 -3.35674 2.81730 3.20871 3.39269 3.43564 3.46751 4.45790 4.64142 4.74061 4.81531 4.84328 5.08995 5.19335 5.21542 5.25648 5.39028 5.52504 5.55234 5.59685 5.69724 5.75082 5.76544 5.79139 5.81484 5.88986 5.96093 5.98518 6.02533 6.07079 6.18254 6.23972 6.25096 6.26623 6.32577 6.36735 6.52686 6.59419 6.60943 6.65038 6.74090 6.80630 7.00968 7.70652 7.91279 8.27848 8.40028 8.89308 9.66814 10.05755 11.15493 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.007217 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.371144 B = 3878.596219 C = 4989.936677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.146 4.146 5 C 0.521 3.479 6 O -0.549 6.549 7 N -0.722 5.722 8 C 0.131 3.869 9 C -0.093 4.093 10 C -0.128 4.128 11 C -0.096 4.096 12 C -0.137 4.137 13 C 0.146 3.854 14 N -0.603 5.603 15 C -0.255 4.255 16 H 0.086 0.914 17 C 0.024 3.976 18 N -0.907 5.907 19 Si 0.877 3.123 20 H -0.287 1.287 21 H -0.304 1.304 22 H -0.272 1.272 23 C 0.141 3.859 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.404 0.596 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.021 0.979 45 H 0.262 0.738 46 H 0.069 0.931 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.164 2.706 6.024 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 C -0.198 4.198 4 C -0.204 4.204 5 C 0.307 3.693 6 O -0.427 6.427 7 N -0.374 5.374 8 C 0.007 3.993 9 C -0.096 4.096 10 C -0.185 4.185 11 C -0.134 4.134 12 C -0.176 4.176 13 C 0.021 3.979 14 N -0.326 5.326 15 C -0.384 4.384 16 H 0.104 0.896 17 C -0.175 4.175 18 N -0.550 5.550 19 Si 0.708 3.292 20 H -0.215 1.215 21 H -0.232 1.232 22 H -0.197 1.197 23 C 0.015 3.985 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.241 0.759 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.039 0.961 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.660 2.415 6.420 12.676 hybrid contribution -0.503 -0.488 -0.762 1.035 sum -11.163 1.927 5.658 12.662 Atomic orbital electron populations 1.21629 0.92110 1.02648 1.01756 1.20819 0.97862 0.96573 0.93886 1.21871 1.01655 0.93651 1.02663 1.21944 1.02065 1.00440 0.95913 1.20539 0.82223 0.79393 0.87116 1.90647 1.55498 1.49279 1.47315 1.46166 1.07105 1.58307 1.25810 1.21426 0.93857 0.96848 0.87188 1.21353 0.92059 0.97668 0.98483 1.21738 1.03092 0.93791 0.99887 1.21357 0.96473 0.99636 0.95926 1.22046 0.95074 1.01799 0.98647 1.20956 0.97109 0.94046 0.85832 1.44301 1.00419 1.69962 1.17878 1.18927 0.98562 1.35779 0.85101 0.89646 1.25268 0.97888 0.98703 0.95665 1.69831 1.43065 1.38111 1.04026 0.87064 0.82617 0.82663 0.76896 1.21494 1.23239 1.19668 1.21350 0.85251 0.96804 0.95110 0.92079 0.92176 0.92082 0.91847 0.91347 0.92103 0.92158 0.91294 0.91583 0.75946 0.91908 0.91726 0.93483 0.94006 0.90470 0.92449 0.92764 0.92712 0.91486 0.91940 0.96090 0.92813 0.91347 0.95730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 7.76 37.16 0.29 -1.17 16 2 C -0.09 -1.15 0.87 -155.67 -0.14 -1.28 16 3 C -0.14 -1.58 8.37 37.16 0.31 -1.26 16 4 C -0.15 -1.91 8.37 37.16 0.31 -1.60 16 5 C 0.52 8.37 6.48 -10.99 -0.07 8.30 16 6 O -0.55 -10.33 15.98 5.56 0.09 -10.24 16 7 N -0.72 -11.50 4.78 -60.30 -0.29 -11.79 16 8 C 0.13 2.07 4.57 -4.04 -0.02 2.06 16 9 C -0.09 -1.55 0.53 -154.39 -0.08 -1.63 16 10 C -0.13 -2.09 7.81 37.16 0.29 -1.80 16 11 C -0.10 -1.43 4.71 -26.69 -0.13 -1.56 16 12 C -0.14 -2.11 5.74 -26.61 -0.15 -2.26 16 13 C 0.15 2.75 6.52 -3.71 -0.02 2.73 16 14 N -0.60 -13.50 2.21 -172.32 -0.38 -13.88 16 15 C -0.26 -6.78 10.04 -15.06 -0.15 -6.93 16 16 H 0.09 2.44 8.06 -52.48 -0.42 2.02 16 17 C 0.02 0.65 5.24 -17.43 -0.09 0.56 16 18 N -0.91 -26.66 13.97 55.49 0.78 -25.89 16 19 Si 0.88 21.56 24.35 -169.99 -4.14 17.42 16 20 H -0.29 -6.52 6.32 56.52 0.36 -6.17 16 21 H -0.30 -7.75 7.11 56.52 0.40 -7.34 16 22 H -0.27 -6.75 6.47 56.52 0.37 -6.38 16 23 C 0.14 2.89 2.61 -3.71 -0.01 2.88 16 24 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.77 8.10 -51.93 -0.42 0.34 16 27 H 0.06 0.74 7.56 -51.93 -0.39 0.34 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.97 7.18 -51.93 -0.37 0.60 16 33 H 0.40 6.49 5.06 -40.82 -0.21 6.29 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.78 6.87 -51.93 -0.36 0.42 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.42 5.97 -51.93 -0.31 1.11 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.07 6.33 -51.93 -0.33 0.74 16 43 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.07 1.51 3.44 -51.93 -0.18 1.33 16 47 H 0.02 0.53 6.97 -51.93 -0.36 0.17 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -30.08 348.39 -6.83 -36.90 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.47 Total: 5.19 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 0.34 Total: -2.97 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.11 Total: -51.56 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.42 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.08 -6.83 -36.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754733920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.355 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds