Wall clock time and date at job start Tue Mar 31 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46970 * 2 1 4 4 C 1.53001 * 109.47105 * 60.00402 * 3 2 1 5 5 C 1.53005 * 109.47413 * 299.99877 * 3 2 1 6 6 C 1.50701 * 109.47084 * 180.02562 * 3 2 1 7 7 O 1.21280 * 120.00144 * 0.02562 * 6 3 2 8 8 N 1.34779 * 120.00005 * 179.97438 * 6 3 2 9 9 C 1.46503 * 119.99663 * 180.02562 * 8 6 3 10 10 H 1.08999 * 110.78518 * 31.76298 * 9 8 6 11 11 C 1.54367 * 110.70530 * 268.48757 * 9 8 6 12 12 N 1.47026 * 107.28747 * 263.79753 * 11 9 8 13 13 C 1.36943 * 125.64860 * 181.05664 * 12 11 9 14 14 H 1.07998 * 120.00099 * 180.02562 * 13 12 11 15 15 C 1.38812 * 119.99710 * 0.04073 * 13 12 11 16 16 N 1.31618 * 120.00298 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99770 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47136 * 90.00026 * 17 15 13 19 19 H 1.48500 * 109.47471 * 209.99968 * 17 15 13 20 20 H 1.48500 * 109.47209 * 329.99893 * 17 15 13 21 21 C 1.47427 * 108.70271 * 1.08915 * 12 11 9 22 22 C 1.54900 * 104.83158 * 335.87406 * 21 12 11 23 23 C 1.53006 * 111.00440 * 155.08415 * 22 21 12 24 24 C 1.53000 * 111.00703 * 278.89350 * 22 21 12 25 25 H 1.09003 * 109.47173 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46866 * 299.99646 * 1 2 3 27 27 H 1.08994 * 109.47308 * 59.99580 * 1 2 3 28 28 H 1.08998 * 109.46579 * 240.00181 * 2 1 3 29 29 H 1.08997 * 109.46829 * 120.00240 * 2 1 3 30 30 H 1.09003 * 109.47004 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.46885 * 299.99380 * 4 3 2 32 32 H 1.08992 * 109.47378 * 60.00071 * 4 3 2 33 33 H 1.08995 * 109.47014 * 300.00481 * 5 3 2 34 34 H 1.08999 * 109.46754 * 60.00308 * 5 3 2 35 35 H 1.09001 * 109.47215 * 179.97438 * 5 3 2 36 36 H 0.96992 * 120.00371 * 0.02562 * 8 6 3 37 37 H 1.08998 * 109.84948 * 144.38861 * 11 9 8 38 38 H 1.09002 * 110.03130 * 23.30059 * 11 9 8 39 39 H 0.96998 * 119.99798 * 180.02562 * 16 15 13 40 40 H 1.08995 * 110.36679 * 217.03010 * 21 12 11 41 41 H 1.09000 * 110.36514 * 94.70975 * 21 12 11 42 42 H 1.08998 * 109.46951 * 184.58173 * 23 22 21 43 43 H 1.09005 * 109.46741 * 304.57819 * 23 22 21 44 44 H 1.08996 * 109.47202 * 64.58056 * 23 22 21 45 45 H 1.09004 * 109.47108 * 295.42423 * 24 22 21 46 46 H 1.09002 * 109.46756 * 55.42165 * 24 22 21 47 47 H 1.08991 * 109.47376 * 175.41925 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1638 -1.2493 6 6 3.5470 1.4425 -0.0006 7 8 4.1534 0.3922 -0.0015 8 7 4.2208 2.6097 -0.0013 9 6 5.6859 2.6097 -0.0025 10 1 6.0722 1.7432 -0.5391 11 6 6.2328 2.6479 1.4406 12 7 6.5295 4.0524 1.7583 13 6 7.0526 4.5105 2.9381 14 1 7.2345 5.5663 3.0743 15 6 7.3494 3.6176 3.9587 16 7 7.1275 2.3310 3.7928 17 14 8.0636 4.2424 5.5677 18 1 6.9597 4.5647 6.5073 19 1 8.9311 3.1950 6.1641 20 1 8.8678 5.4641 5.3111 21 6 6.1698 4.8860 0.5968 22 6 6.2343 3.9249 -0.6163 23 6 5.3360 4.4158 -1.7534 24 6 7.6754 3.7460 -1.0982 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8937 3.1912 1.2495 31 1 0.4400 2.1637 1.2493 32 1 1.8934 1.6499 2.1392 33 1 1.8933 1.6499 -2.1392 34 1 0.4400 2.1638 -1.2492 35 1 1.8929 3.1916 -1.2490 36 1 3.7359 3.4497 -0.0009 37 1 7.1434 2.0524 1.5071 38 1 5.4856 2.2610 2.1335 39 1 7.3346 1.7072 4.5062 40 1 6.8868 5.6980 0.4761 41 1 5.1614 5.2833 0.7127 42 1 5.3367 3.6822 -2.5595 43 1 4.3194 4.5471 -1.3824 44 1 5.7118 5.3678 -2.1281 45 1 8.0542 4.6972 -1.4721 46 1 8.2966 3.4083 -0.2686 47 1 7.7020 3.0050 -1.8970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755413292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:54 Heat of formation + Delta-G solvation = -32.061863 kcal Electronic energy + Delta-G solvation = -24313.548437 eV Core-core repulsion = 21110.324016 eV Total energy + Delta-G solvation = -3203.224422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12430 -38.32092 -35.99291 -33.84429 -32.96855 -30.68690 -30.17472 -27.92540 -27.36461 -26.73978 -25.61056 -24.79006 -23.44766 -21.42277 -20.03450 -19.08430 -18.27313 -16.71057 -16.58960 -15.85346 -14.99463 -14.74589 -14.44798 -14.08310 -14.03122 -13.83970 -13.65393 -13.28035 -12.71768 -12.61641 -12.38720 -12.15592 -11.98459 -11.95384 -11.89084 -11.64947 -11.49536 -11.29737 -11.21225 -11.04339 -10.95008 -10.75947 -10.58319 -10.56891 -10.34681 -10.20910 -9.97118 -9.84675 -9.61347 -9.19067 -8.60054 -8.33955 -6.79889 -5.66586 -3.01438 3.12007 3.41412 3.46242 3.48792 3.63682 4.51960 4.70997 4.82866 4.91414 4.99701 5.26114 5.30441 5.31959 5.34115 5.46151 5.53300 5.56203 5.62445 5.66724 5.78911 5.83371 5.85211 5.90452 5.94462 6.01793 6.06020 6.08375 6.15536 6.18938 6.24751 6.27914 6.36952 6.42350 6.45980 6.61523 6.63813 6.70584 6.82152 7.01350 7.59044 7.69076 7.86713 8.04545 8.28813 8.73875 9.24732 9.85501 10.51215 11.43913 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.005617 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.411504 B = 4983.262815 C = 5970.864311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.099 4.099 3 C -0.082 4.082 4 C -0.142 4.142 5 C -0.140 4.140 6 C 0.521 3.479 7 O -0.544 6.544 8 N -0.707 5.707 9 C 0.123 3.877 10 H 0.087 0.913 11 C 0.175 3.825 12 N -0.602 5.602 13 C -0.229 4.229 14 H 0.077 0.923 15 C -0.007 4.007 16 N -0.918 5.918 17 Si 0.910 3.090 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.144 3.856 22 C -0.090 4.090 23 C -0.129 4.129 24 C -0.125 4.125 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.394 0.606 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.252 0.748 40 H 0.040 0.960 41 H 0.014 0.986 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.068 0.932 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.350 1.241 -11.585 16.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.137 4.137 3 C -0.085 4.085 4 C -0.199 4.199 5 C -0.197 4.197 6 C 0.306 3.694 7 O -0.421 6.421 8 N -0.358 5.358 9 C 0.018 3.982 10 H 0.106 0.894 11 C 0.050 3.950 12 N -0.329 5.329 13 C -0.358 4.358 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.566 5.566 17 Si 0.740 3.260 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.018 3.982 22 C -0.092 4.092 23 C -0.187 4.187 24 C -0.183 4.183 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.229 0.771 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.032 0.968 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.809 0.390 -11.366 15.690 hybrid contribution 0.188 0.722 1.028 1.270 sum -10.622 1.112 -10.338 14.863 Atomic orbital electron populations 1.21917 0.95867 1.01531 1.01849 1.21325 0.94987 0.94009 1.03371 1.20797 0.92163 0.98083 0.97475 1.21899 1.01287 1.00282 0.96441 1.21895 1.01622 0.99945 0.96265 1.20402 0.89313 0.83874 0.75788 1.90675 1.70196 1.31394 1.49792 1.45993 1.07444 1.08054 1.74283 1.22455 0.78694 0.97181 0.99856 0.89449 1.21522 0.98892 0.86108 0.88481 1.44440 1.74516 1.02004 1.11914 1.19019 1.34637 0.92501 0.89617 0.90530 1.24802 1.01635 0.95481 0.98413 1.69970 1.53348 1.00722 1.32516 0.86156 0.78558 0.77479 0.83764 1.21717 1.21716 1.20738 1.21613 0.96971 0.93150 0.86462 1.22015 0.95825 0.96129 0.95210 1.21665 0.98836 1.00579 0.97644 1.21589 0.94980 1.00767 1.00947 0.92807 0.92401 0.92590 0.91472 0.91183 0.92154 0.91503 0.91796 0.92251 0.91394 0.92325 0.77098 0.93027 0.93405 0.93725 0.94180 0.96835 0.92927 0.93124 0.92752 0.92926 0.91268 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.21 37.16 0.34 -1.13 16 2 C -0.10 -1.25 4.28 -26.73 -0.11 -1.37 16 3 C -0.08 -1.06 0.64 -155.66 -0.10 -1.16 16 4 C -0.14 -1.74 8.02 37.16 0.30 -1.44 16 5 C -0.14 -1.41 8.02 37.16 0.30 -1.12 16 6 C 0.52 9.02 6.48 -10.98 -0.07 8.95 16 7 O -0.54 -11.65 15.63 5.56 0.09 -11.57 16 8 N -0.71 -11.90 4.22 -52.01 -0.22 -12.12 16 9 C 0.12 2.39 2.60 -66.07 -0.17 2.21 16 10 H 0.09 1.79 7.46 -51.93 -0.39 1.40 16 11 C 0.18 4.35 4.76 -3.04 -0.01 4.34 16 12 N -0.60 -15.07 3.38 -170.05 -0.58 -15.64 16 13 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 14 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 15 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 16 N -0.92 -27.56 10.31 55.49 0.57 -26.99 16 17 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.14 2.86 6.12 -2.53 -0.02 2.85 16 22 C -0.09 -1.51 0.83 -152.36 -0.13 -1.64 16 23 C -0.13 -1.69 8.27 37.16 0.31 -1.38 16 24 C -0.13 -2.03 8.59 37.16 0.32 -1.71 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 27 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 28 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 29 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 30 H 0.06 0.73 7.57 -51.93 -0.39 0.34 16 31 H 0.07 0.66 6.43 -51.93 -0.33 0.32 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.57 6.43 -51.93 -0.33 0.23 16 35 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 36 H 0.39 5.83 5.91 -40.82 -0.24 5.59 16 37 H 0.05 1.45 7.38 -51.93 -0.38 1.07 16 38 H 0.05 1.36 7.40 -51.93 -0.38 0.98 16 39 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 40 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 41 H 0.01 0.27 8.03 -51.93 -0.42 -0.15 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.61 6.40 -51.93 -0.33 0.28 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 1.33 7.86 -51.93 -0.41 0.92 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -31.96 356.67 -7.52 -39.48 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.44 Total: 3.55 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 0.70 Total: 0.61 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.22 Total: -54.75 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.96 -7.52 -39.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755413292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.420 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds