Wall clock time and date at job start Tue Mar 31 2020 06:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47141 * 2 1 4 4 C 1.52997 * 109.47403 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47640 * 180.02562 * 4 3 2 6 6 C 1.46893 * 111.00333 * 190.00024 * 5 4 3 7 7 C 1.53000 * 109.47412 * 75.87847 * 6 5 4 8 8 C 1.50696 * 109.47053 * 174.90522 * 7 6 5 9 9 O 1.21286 * 120.00297 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00090 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99420 * 0.02562 * 10 8 7 12 12 C 1.46494 * 120.00341 * 180.02562 * 10 8 7 13 13 C 1.50705 * 109.46859 * 90.00318 * 12 10 8 14 14 H 1.07994 * 120.00105 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99789 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00284 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99821 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47518 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46912 * 120.00201 * 17 15 13 20 20 H 1.48502 * 109.47742 * 240.00467 * 17 15 13 21 21 C 1.46909 * 111.00018 * 66.03919 * 5 4 3 22 22 C 1.52993 * 117.50212 * 254.29008 * 21 5 4 23 23 C 1.52998 * 117.49751 * 185.66186 * 21 5 4 24 24 H 1.08996 * 109.47166 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47213 * 300.00143 * 1 2 3 26 26 H 1.09007 * 109.46981 * 59.99716 * 1 2 3 27 27 H 1.08999 * 109.46963 * 240.00347 * 2 1 3 28 28 H 1.08998 * 109.46897 * 120.00099 * 2 1 3 29 29 H 1.09000 * 109.47184 * 59.99839 * 3 2 1 30 30 H 1.09010 * 109.46901 * 300.00020 * 3 2 1 31 31 H 1.09000 * 109.47260 * 59.99668 * 4 3 2 32 32 H 1.09007 * 109.46672 * 300.00255 * 4 3 2 33 33 H 1.09006 * 109.47142 * 315.87948 * 6 5 4 34 34 H 1.09006 * 109.47404 * 195.88118 * 6 5 4 35 35 H 1.08998 * 109.46997 * 294.90666 * 7 6 5 36 36 H 1.08997 * 109.46756 * 54.90527 * 7 6 5 37 37 H 1.08998 * 109.47261 * 89.99560 * 11 10 8 38 38 H 1.09000 * 109.46750 * 209.99475 * 11 10 8 39 39 H 1.08992 * 109.47280 * 329.99296 * 11 10 8 40 40 H 1.08994 * 109.47405 * 210.00343 * 12 10 8 41 41 H 1.09005 * 109.47056 * 330.00699 * 12 10 8 42 42 H 0.96993 * 120.00114 * 179.97438 * 16 15 13 43 43 H 1.09003 * 115.54479 * 39.99913 * 21 5 4 44 44 H 1.09004 * 117.49803 * 359.97438 * 22 21 5 45 45 H 1.09000 * 117.49971 * 145.01987 * 22 21 5 46 46 H 1.08996 * 117.49708 * 214.98074 * 23 21 5 47 47 H 1.08997 * 117.50047 * 359.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0597 2.8275 0.0000 6 6 5.5084 2.8738 -0.2387 7 6 5.7894 2.6205 -1.7212 8 6 7.2624 2.7914 -1.9896 9 8 8.0136 3.0863 -1.0842 10 7 7.7452 2.6156 -3.2356 11 6 6.8378 2.2589 -4.3292 12 6 9.1772 2.7811 -3.4965 13 6 9.8777 1.4598 -3.3104 14 1 9.3127 0.5844 -3.0266 15 6 11.2398 1.3686 -3.5034 16 7 11.9279 2.4346 -3.8494 17 14 12.1082 -0.2690 -3.2720 18 1 11.1169 -1.3047 -2.8848 19 1 12.7657 -0.6646 -4.5434 20 1 13.1323 -0.1399 -2.2044 21 6 3.7106 3.5088 1.2538 22 6 2.5818 4.5404 1.2068 23 6 4.0328 5.0007 1.3606 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8901 31 1 3.9330 0.9289 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 6.0000 2.1073 0.3604 34 1 5.8916 3.8551 0.0412 35 1 5.4883 1.6054 -1.9798 36 1 5.2252 3.3317 -2.3246 37 1 6.4612 3.1671 -4.7997 38 1 7.3749 1.6632 -5.0672 39 1 6.0024 1.6810 -3.9342 40 1 9.3224 3.1285 -4.5194 41 1 9.5908 3.5126 -2.8022 42 1 12.8862 2.3704 -3.9849 43 1 3.8059 2.9073 2.1579 44 1 2.0983 4.7139 0.2454 45 1 1.9340 4.6178 2.0800 46 1 4.3396 5.3808 2.3350 47 1 4.5042 5.4765 0.5007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042490328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:42 Heat of formation + Delta-G solvation = -23.677753 kcal Electronic energy + Delta-G solvation = -22543.243581 eV Core-core repulsion = 19340.382722 eV Total energy + Delta-G solvation = -3202.860860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.31244 -38.43246 -35.63038 -34.82881 -34.10916 -32.60142 -30.83517 -28.53553 -27.43084 -25.71101 -24.02309 -23.24572 -22.45011 -21.74755 -21.18840 -20.06757 -18.27799 -16.65327 -16.48043 -16.18377 -15.81545 -15.23062 -15.11028 -14.72426 -14.51851 -14.15851 -13.97116 -13.26887 -13.21697 -13.00402 -12.59916 -12.28182 -12.18135 -12.14462 -11.82883 -11.72664 -11.62881 -11.50336 -11.23344 -11.15518 -11.04023 -10.86997 -10.83923 -10.57978 -10.55290 -10.36083 -10.15928 -10.13516 -9.58882 -8.84734 -8.42603 -8.37514 -7.59846 -6.02972 -4.07593 3.30165 3.37278 3.40722 3.50124 3.53368 3.76297 4.15190 4.46562 4.65721 4.77044 4.86387 4.89112 4.95031 5.07546 5.14302 5.23034 5.27767 5.31933 5.42993 5.47951 5.51731 5.54779 5.58773 5.65343 5.68330 5.69941 5.78104 5.88753 5.91429 5.94043 5.96329 6.09369 6.10088 6.14213 6.20250 6.24788 6.25469 7.02865 7.08210 7.13103 7.47300 7.58125 7.93904 8.25637 8.46756 8.92605 9.14445 9.57551 11.05158 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018967 B = 0.003415 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.883728 B = 8196.869877 C = 8877.687304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.112 4.112 4 C 0.055 3.945 5 N -0.514 5.514 6 C 0.073 3.927 7 C -0.132 4.132 8 C 0.504 3.496 9 O -0.546 6.546 10 N -0.604 5.604 11 C 0.085 3.915 12 C 0.244 3.756 13 C -0.524 4.524 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.009 3.991 22 C -0.164 4.164 23 C -0.173 4.173 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.031 0.969 41 H 0.043 0.957 42 H 0.262 0.738 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.533 -0.359 6.391 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.150 4.150 4 C -0.072 4.072 5 N -0.238 5.238 6 C -0.055 4.055 7 C -0.173 4.173 8 C 0.290 3.710 9 O -0.424 6.424 10 N -0.336 5.336 11 C -0.060 4.060 12 C 0.125 3.875 13 C -0.563 4.563 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.100 4.100 22 C -0.201 4.201 23 C -0.211 4.211 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.117 0.883 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.149 0.105 6.415 23.059 hybrid contribution 0.989 -1.428 0.593 1.835 sum -21.160 -1.323 7.007 22.329 Atomic orbital electron populations 1.21749 0.95889 1.01387 1.01752 1.21513 0.95833 0.97052 1.01982 1.21569 0.94519 0.96207 1.02701 1.22190 0.95498 0.88564 1.00977 1.61749 1.14485 1.15715 1.31834 1.21800 0.85674 1.02948 0.95050 1.21607 0.94564 1.03315 0.97775 1.20326 0.89583 0.78047 0.82996 1.90662 1.59952 1.48406 1.43405 1.48157 1.10704 1.67499 1.07221 1.21624 0.93716 0.99490 0.91139 1.19281 0.73561 0.97675 0.97000 1.21480 0.92823 0.95281 1.46753 0.92476 1.24946 0.97282 0.96842 0.95134 1.69944 1.07615 1.28368 1.47513 0.86445 0.79586 0.83690 0.77713 1.19836 1.20955 1.20869 1.22345 1.04587 0.91024 0.92053 1.23041 0.91370 1.02798 1.02940 1.23050 0.98832 0.95945 1.03230 0.92953 0.92908 0.92713 0.91939 0.92294 0.91890 0.91311 0.90562 0.94891 0.93896 0.89728 0.89865 0.88968 0.93766 0.90907 0.92435 0.95057 0.93869 0.92788 0.89734 0.88298 0.89185 0.88818 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.13 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.11 -0.99 5.18 -26.73 -0.14 -1.13 16 4 C 0.06 0.59 4.78 -3.83 -0.02 0.57 16 5 N -0.51 -6.15 4.57 -226.65 -1.04 -7.18 16 6 C 0.07 1.07 4.30 -3.83 -0.02 1.05 16 7 C -0.13 -2.01 4.29 -27.89 -0.12 -2.13 16 8 C 0.50 10.64 7.67 -10.99 -0.08 10.56 16 9 O -0.55 -13.92 15.50 5.55 0.09 -13.83 16 10 N -0.60 -13.08 2.86 -182.96 -0.52 -13.60 16 11 C 0.08 1.36 10.24 59.85 0.61 1.98 16 12 C 0.24 6.52 5.16 -5.19 -0.03 6.50 16 13 C -0.52 -15.13 9.39 -34.44 -0.32 -15.46 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 17 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.01 0.09 4.18 -67.71 -0.28 -0.19 16 22 C -0.16 -1.49 10.00 -26.73 -0.27 -1.76 16 23 C -0.17 -1.79 9.55 -26.73 -0.26 -2.04 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.56 7.02 -51.93 -0.36 0.20 16 30 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 31 H 0.08 0.83 6.72 -51.93 -0.35 0.48 16 32 H 0.03 0.36 8.09 -51.92 -0.42 -0.06 16 33 H 0.04 0.69 8.00 -51.93 -0.42 0.28 16 34 H 0.08 1.35 6.60 -51.93 -0.34 1.01 16 35 H 0.08 1.15 6.22 -51.93 -0.32 0.82 16 36 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 39 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 40 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 41 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 43 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.10 1.15 7.72 -51.93 -0.40 0.75 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -32.60 377.23 -9.67 -42.27 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -8.79 Total: -1.96 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.81 Total: -2.24 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.82 Total: -47.01 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.60 -9.67 -42.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042490328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.591 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds