Wall clock time and date at job start Tue Mar 31 2020 06:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47141 * 2 1 4 4 C 1.52997 * 109.47403 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47640 * 180.02562 * 4 3 2 6 6 C 1.46893 * 111.00333 * 190.00024 * 5 4 3 7 7 C 1.53000 * 109.47412 * 75.87847 * 6 5 4 8 8 C 1.50696 * 109.47053 * 174.90522 * 7 6 5 9 9 O 1.21286 * 120.00297 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00090 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99420 * 0.02562 * 10 8 7 12 12 C 1.46494 * 120.00341 * 180.02562 * 10 8 7 13 13 C 1.50705 * 109.46859 * 90.00318 * 12 10 8 14 14 H 1.07994 * 120.00105 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99789 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00284 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99821 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47518 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46912 * 120.00201 * 17 15 13 20 20 H 1.48502 * 109.47742 * 240.00467 * 17 15 13 21 21 C 1.46909 * 111.00018 * 66.03919 * 5 4 3 22 22 C 1.52993 * 117.50212 * 254.29008 * 21 5 4 23 23 C 1.52998 * 117.49751 * 185.66186 * 21 5 4 24 24 H 1.08996 * 109.47166 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47213 * 300.00143 * 1 2 3 26 26 H 1.09007 * 109.46981 * 59.99716 * 1 2 3 27 27 H 1.08999 * 109.46963 * 240.00347 * 2 1 3 28 28 H 1.08998 * 109.46897 * 120.00099 * 2 1 3 29 29 H 1.09000 * 109.47184 * 59.99839 * 3 2 1 30 30 H 1.09010 * 109.46901 * 300.00020 * 3 2 1 31 31 H 1.09000 * 109.47260 * 59.99668 * 4 3 2 32 32 H 1.09007 * 109.46672 * 300.00255 * 4 3 2 33 33 H 1.09006 * 109.47142 * 315.87948 * 6 5 4 34 34 H 1.09006 * 109.47404 * 195.88118 * 6 5 4 35 35 H 1.08998 * 109.46997 * 294.90666 * 7 6 5 36 36 H 1.08997 * 109.46756 * 54.90527 * 7 6 5 37 37 H 1.08998 * 109.47261 * 89.99560 * 11 10 8 38 38 H 1.09000 * 109.46750 * 209.99475 * 11 10 8 39 39 H 1.08992 * 109.47280 * 329.99296 * 11 10 8 40 40 H 1.08994 * 109.47405 * 210.00343 * 12 10 8 41 41 H 1.09005 * 109.47056 * 330.00699 * 12 10 8 42 42 H 0.96993 * 120.00114 * 179.97438 * 16 15 13 43 43 H 1.09003 * 115.54479 * 39.99913 * 21 5 4 44 44 H 1.09004 * 117.49803 * 359.97438 * 22 21 5 45 45 H 1.09000 * 117.49971 * 145.01987 * 22 21 5 46 46 H 1.08996 * 117.49708 * 214.98074 * 23 21 5 47 47 H 1.08997 * 117.50047 * 359.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0597 2.8275 0.0000 6 6 5.5084 2.8738 -0.2387 7 6 5.7894 2.6205 -1.7212 8 6 7.2624 2.7914 -1.9896 9 8 8.0136 3.0863 -1.0842 10 7 7.7452 2.6156 -3.2356 11 6 6.8378 2.2589 -4.3292 12 6 9.1772 2.7811 -3.4965 13 6 9.8777 1.4598 -3.3104 14 1 9.3127 0.5844 -3.0266 15 6 11.2398 1.3686 -3.5034 16 7 11.9279 2.4346 -3.8494 17 14 12.1082 -0.2690 -3.2720 18 1 11.1169 -1.3047 -2.8848 19 1 12.7657 -0.6646 -4.5434 20 1 13.1323 -0.1399 -2.2044 21 6 3.7106 3.5088 1.2538 22 6 2.5818 4.5404 1.2068 23 6 4.0328 5.0007 1.3606 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9564 -0.8901 31 1 3.9330 0.9289 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 6.0000 2.1073 0.3604 34 1 5.8916 3.8551 0.0412 35 1 5.4883 1.6054 -1.9798 36 1 5.2252 3.3317 -2.3246 37 1 6.4612 3.1671 -4.7997 38 1 7.3749 1.6632 -5.0672 39 1 6.0024 1.6810 -3.9342 40 1 9.3224 3.1285 -4.5194 41 1 9.5908 3.5126 -2.8022 42 1 12.8862 2.3704 -3.9849 43 1 3.8059 2.9073 2.1579 44 1 2.0983 4.7139 0.2454 45 1 1.9340 4.6178 2.0800 46 1 4.3396 5.3808 2.3350 47 1 4.5042 5.4765 0.5007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042490328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:42 Heat of formation + Delta-G solvation = -43.613870 kcal Electronic energy + Delta-G solvation = -22544.108076 eV Core-core repulsion = 19340.382722 eV Total energy + Delta-G solvation = -3203.725354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.78574 -39.56654 -36.62464 -36.35242 -35.11931 -34.68869 -32.01117 -29.94638 -28.81355 -27.27693 -25.51582 -24.29745 -23.52759 -22.87899 -21.89498 -21.00625 -19.90140 -18.71672 -17.95331 -17.28050 -17.07406 -16.60705 -16.54843 -16.09669 -15.60627 -15.39350 -15.11766 -14.44006 -14.30810 -13.94000 -13.91001 -13.79805 -13.55476 -13.44506 -13.26607 -13.06671 -12.83056 -12.76760 -12.59241 -12.41307 -12.26663 -12.22311 -11.90606 -11.86542 -11.68846 -11.59420 -11.49932 -11.15363 -10.99385 -10.66424 -10.59275 -9.42117 -9.35054 -8.23826 -6.39000 1.35083 1.37519 1.49426 1.84161 2.25519 2.39793 2.82543 2.96634 3.05492 3.80091 3.89506 3.99855 4.06393 4.07584 4.14404 4.18366 4.33003 4.38571 4.43376 4.52862 4.61187 4.70765 4.72777 4.75684 4.81241 4.83852 4.91233 4.96261 5.01868 5.02322 5.05042 5.05772 5.12683 5.17532 5.22651 5.34925 5.35024 5.46325 5.54978 5.55497 5.83813 6.01431 6.05006 6.19918 6.68646 6.79130 7.26931 7.48375 8.83536 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018967 B = 0.003415 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.883728 B = 8196.869877 C = 8877.687304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.102 4.102 4 C 0.053 3.947 5 N -0.508 5.508 6 C 0.081 3.919 7 C -0.112 4.112 8 C 0.494 3.506 9 O -0.601 6.601 10 N -0.611 5.611 11 C 0.079 3.921 12 C 0.258 3.742 13 C -0.542 4.542 14 H 0.053 0.947 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.969 3.031 18 H -0.267 1.267 19 H -0.268 1.268 20 H -0.282 1.282 21 C -0.008 4.008 22 C -0.140 4.140 23 C -0.183 4.183 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.027 0.973 33 H 0.021 0.979 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.023 0.977 41 H -0.004 1.004 42 H 0.267 0.733 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.920 -1.719 6.147 25.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.075 4.075 5 N -0.232 5.232 6 C -0.047 4.047 7 C -0.152 4.152 8 C 0.283 3.717 9 O -0.483 6.483 10 N -0.343 5.343 11 C -0.063 4.063 12 C 0.136 3.864 13 C -0.581 4.581 14 H 0.071 0.929 15 C -0.193 4.193 16 N -0.569 5.569 17 Si 0.794 3.206 18 H -0.191 1.191 19 H -0.193 1.193 20 H -0.207 1.207 21 C -0.116 4.116 22 C -0.177 4.177 23 C -0.220 4.220 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.041 0.959 41 H 0.014 0.986 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.118 0.882 45 H 0.129 0.871 46 H 0.120 0.880 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -24.592 -1.261 6.139 25.378 hybrid contribution 1.710 -0.949 0.678 2.070 sum -22.882 -2.210 6.817 23.978 Atomic orbital electron populations 1.21735 0.95056 1.01845 1.01999 1.21501 0.96531 0.96289 1.01933 1.21476 0.92860 0.96899 1.02718 1.22282 0.96822 0.87626 1.00728 1.61788 1.12073 1.16648 1.32665 1.21597 0.87521 1.01159 0.94437 1.21506 0.89875 1.05335 0.98443 1.21378 0.91822 0.76527 0.81943 1.90630 1.61923 1.50734 1.45059 1.48203 1.09427 1.67475 1.09145 1.21930 0.93499 1.01253 0.89621 1.18757 0.76846 0.95790 0.95001 1.21737 0.93556 0.95751 1.47047 0.92884 1.25893 0.98075 1.00822 0.94528 1.70060 1.08137 1.30658 1.48062 0.85341 0.78228 0.78916 0.78152 1.19092 1.19263 1.20746 1.22458 1.06363 0.91206 0.91615 1.23079 0.90661 1.00141 1.03843 1.23073 1.00199 0.95581 1.03165 0.92439 0.92649 0.92484 0.91923 0.92464 0.91767 0.91296 0.90494 0.95510 0.96069 0.91584 0.87451 0.86424 0.91128 0.91596 0.88775 0.95850 0.98553 0.92367 0.89659 0.88202 0.87131 0.87973 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.12 -1.69 5.93 30.60 0.18 -1.51 16 3 C -0.10 -1.56 5.18 30.59 0.16 -1.40 16 4 C 0.05 1.03 4.78 86.30 0.41 1.45 16 5 N -0.51 -11.46 4.57 -870.99 -3.98 -15.44 16 6 C 0.08 2.37 4.30 86.30 0.37 2.74 16 7 C -0.11 -3.22 4.29 29.85 0.13 -3.10 16 8 C 0.49 21.09 7.67 87.65 0.67 21.76 16 9 O -0.60 -32.09 15.50 -3.05 -0.05 -32.14 16 10 N -0.61 -26.61 2.86 -851.13 -2.43 -29.04 16 11 C 0.08 2.39 10.24 127.77 1.31 3.69 16 12 C 0.26 14.30 5.16 85.64 0.44 14.74 16 13 C -0.54 -31.95 9.39 25.60 0.24 -31.71 16 14 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 15 C 0.01 0.33 5.46 84.65 0.46 0.79 16 16 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 17 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 21 C -0.01 -0.16 4.18 44.91 0.19 0.03 16 22 C -0.14 -2.23 10.00 30.59 0.31 -1.93 16 23 C -0.18 -3.62 9.55 30.60 0.29 -3.33 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.98 7.02 -2.39 -0.02 0.96 16 30 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.08 1.49 6.72 -2.39 -0.02 1.47 16 32 H 0.03 0.56 8.09 -2.38 -0.02 0.54 16 33 H 0.02 0.70 8.00 -2.38 -0.02 0.68 16 34 H 0.07 2.18 6.60 -2.38 -0.02 2.16 16 35 H 0.11 2.63 6.22 -2.39 -0.01 2.62 16 36 H 0.12 2.87 8.11 -2.39 -0.02 2.85 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 39 H 0.09 2.15 6.44 -2.39 -0.02 2.14 16 40 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 41 H 0.00 -0.23 7.42 -2.38 -0.02 -0.25 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 44 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.09 1.97 7.72 -2.39 -0.02 1.95 16 Total: -1.00 -73.52 377.23 2.63 -70.89 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.90 Total: 13.83 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 5.88 Total: 1.22 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -6.13 Total: -101.36 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.05 Total: -32.14 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -73.52 2.63 -70.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042490328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.274 kcal (2) G-P(sol) polarization free energy of solvation -73.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds