Wall clock time and date at job start Tue Mar 31 2020 06:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46871 * 2 1 4 4 C 1.52995 * 109.47398 * 119.99870 * 2 1 3 5 5 N 1.46902 * 109.47125 * 174.99861 * 4 2 1 6 6 C 1.46900 * 110.99726 * 170.00098 * 5 4 2 7 7 C 1.53000 * 109.47361 * 285.19897 * 6 5 4 8 8 C 1.50698 * 109.46916 * 185.14251 * 7 6 5 9 9 O 1.21286 * 120.00477 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99947 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99585 * 0.02562 * 10 8 7 12 12 C 1.46500 * 120.00064 * 180.02562 * 10 8 7 13 13 C 1.50694 * 109.47222 * 89.99806 * 12 10 8 14 14 H 1.07998 * 119.99977 * 0.02562 * 13 12 10 15 15 C 1.37881 * 119.99906 * 179.97438 * 13 12 10 16 16 N 1.31510 * 119.99685 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99918 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47321 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46946 * 120.00040 * 17 15 13 20 20 H 1.48497 * 109.47384 * 240.00264 * 17 15 13 21 21 C 1.46898 * 110.99980 * 293.95654 * 5 4 2 22 22 C 1.53003 * 117.50049 * 246.64366 * 21 5 4 23 23 C 1.52999 * 59.99945 * 252.51553 * 22 21 5 24 24 H 1.09004 * 109.47187 * 300.00069 * 1 2 3 25 25 H 1.08998 * 109.47314 * 59.99907 * 1 2 3 26 26 H 1.08996 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 240.00650 * 2 1 3 28 28 H 1.08998 * 109.46744 * 60.00451 * 3 2 1 29 29 H 1.09001 * 109.46594 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47227 * 300.00146 * 3 2 1 31 31 H 1.08993 * 109.47456 * 295.00299 * 4 2 1 32 32 H 1.09008 * 109.46808 * 54.99944 * 4 2 1 33 33 H 1.09005 * 109.46926 * 45.20079 * 6 5 4 34 34 H 1.09005 * 109.46924 * 165.19252 * 6 5 4 35 35 H 1.08998 * 109.46814 * 305.14270 * 7 6 5 36 36 H 1.09003 * 109.46740 * 65.14297 * 7 6 5 37 37 H 1.09001 * 109.47276 * 89.99984 * 11 10 8 38 38 H 1.09008 * 109.46545 * 210.00317 * 11 10 8 39 39 H 1.09001 * 109.47208 * 329.99745 * 11 10 8 40 40 H 1.08999 * 109.46827 * 209.99917 * 12 10 8 41 41 H 1.09001 * 109.46617 * 329.99448 * 12 10 8 42 42 H 0.97001 * 120.00092 * 179.97438 * 16 15 13 43 43 H 1.08996 * 115.55016 * 32.35856 * 21 5 4 44 44 H 1.09001 * 117.49281 * 0.02562 * 22 21 5 45 45 H 1.08994 * 117.49746 * 145.02079 * 22 21 5 46 46 H 1.08996 * 117.49327 * 252.50867 * 23 22 21 47 47 H 1.08995 * 117.52021 * 107.48421 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5041 -0.8266 1.1903 6 6 4.0499 -1.2965 2.4706 7 6 4.0021 -0.1596 3.4935 8 6 4.6761 -0.6011 4.7670 9 8 5.1487 -1.7151 4.8484 10 7 4.7547 0.2424 5.8152 11 6 4.1843 1.5883 5.7167 12 6 5.4104 -0.1865 7.0531 13 6 6.8764 0.1567 6.9899 14 1 7.2793 0.6458 6.1154 15 6 7.7031 -0.1528 8.0491 16 7 7.2123 -0.7479 9.1142 17 14 9.5205 0.2719 7.9705 18 1 9.8190 0.9317 6.6742 19 1 9.8621 1.1928 9.0843 20 1 10.3249 -0.9704 8.0909 21 6 3.9250 -1.6995 0.0864 22 6 4.6025 -3.0222 0.4505 23 6 5.4277 -1.8772 -0.1401 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.7517 -0.1583 2.1369 32 1 1.6054 -1.7198 1.2951 33 1 3.4563 -2.1361 2.8324 34 1 5.0827 -1.6156 2.3300 35 1 4.5188 0.7121 3.0921 36 1 2.9636 0.0977 3.7023 37 1 3.1451 1.5674 6.0449 38 1 4.7518 2.2705 6.3497 39 1 4.2318 1.9282 4.6822 40 1 4.9541 0.3235 7.9015 41 1 5.2941 -1.2638 7.1713 42 1 7.7939 -0.9660 9.8592 43 1 3.2813 -1.6888 -0.7932 44 1 4.7354 -3.2447 1.5092 45 1 4.4043 -3.8820 -0.1894 46 1 5.7725 -1.9838 -1.1686 47 1 6.1039 -1.3461 0.5297 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042557040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:46 Heat of formation + Delta-G solvation = -15.028469 kcal Electronic energy + Delta-G solvation = -22989.770986 eV Core-core repulsion = 19787.285187 eV Total energy + Delta-G solvation = -3202.485798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.63001 -38.58348 -36.01289 -34.80658 -33.58088 -32.57035 -30.30964 -27.75042 -27.23198 -25.99161 -25.39178 -23.84131 -22.46358 -22.06346 -20.83722 -19.13925 -18.35087 -16.69972 -16.53051 -16.42065 -15.61730 -15.22314 -14.97267 -14.77683 -14.17747 -14.07269 -14.01426 -13.41767 -12.96774 -12.56291 -12.52895 -12.35496 -12.22339 -12.16241 -11.98251 -11.83294 -11.67789 -11.37245 -11.26279 -11.10842 -11.01066 -10.85567 -10.75276 -10.70564 -10.56759 -10.45296 -10.25801 -10.13918 -9.58654 -8.86143 -8.42390 -8.15973 -7.60777 -6.02818 -4.07353 3.30859 3.37948 3.41331 3.48744 3.51337 3.91057 4.18402 4.46958 4.56707 4.76175 4.84402 4.93187 4.95865 4.99523 5.17917 5.24461 5.31259 5.38500 5.42355 5.47716 5.53141 5.60980 5.66192 5.66674 5.72196 5.76560 5.81517 5.85907 5.94742 5.95843 6.02086 6.13609 6.14378 6.17107 6.19806 6.26001 6.30501 7.01963 7.06129 7.10499 7.46533 7.57469 7.94017 8.25699 8.45724 8.92701 9.13339 9.57826 11.05314 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021327 B = 0.003710 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.552881 B = 7546.262609 C = 8186.717447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.139 4.139 4 C 0.057 3.943 5 N -0.505 5.505 6 C 0.066 3.934 7 C -0.132 4.132 8 C 0.504 3.496 9 O -0.546 6.546 10 N -0.603 5.603 11 C 0.084 3.916 12 C 0.244 3.756 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.022 3.978 22 C -0.223 4.223 23 C -0.172 4.172 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.031 0.969 41 H 0.043 0.957 42 H 0.262 0.738 43 H 0.118 0.882 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.448 2.920 -18.697 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.196 4.196 4 C -0.070 4.070 5 N -0.227 5.227 6 C -0.061 4.061 7 C -0.173 4.173 8 C 0.290 3.710 9 O -0.425 6.425 10 N -0.335 5.335 11 C -0.060 4.060 12 C 0.125 3.875 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.087 4.087 22 C -0.262 4.262 23 C -0.209 4.209 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.135 0.865 44 H 0.123 0.877 45 H 0.109 0.891 46 H 0.113 0.887 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.972 2.762 -18.516 22.221 hybrid contribution 0.728 -0.483 0.285 0.918 sum -11.245 2.279 -18.231 21.541 Atomic orbital electron populations 1.21832 0.95339 1.01532 1.01865 1.21143 0.94901 0.97291 0.97802 1.21726 1.02379 0.94770 1.00717 1.22243 0.87029 0.98995 0.98750 1.61817 1.09666 1.48040 1.03188 1.21942 1.01426 0.95477 0.87268 1.21613 1.01587 1.00285 0.93824 1.20321 0.80411 0.85456 0.84769 1.90660 1.48364 1.20830 1.82624 1.48155 1.56319 1.13114 1.15937 1.21635 0.97589 0.85193 1.01620 1.19279 0.91857 0.97011 0.79336 1.21482 0.93469 1.39075 1.02318 0.92412 1.24947 0.98935 0.95053 0.95269 1.69943 1.35726 1.41459 1.06334 0.86440 0.84955 0.78118 0.77907 1.19783 1.20972 1.20875 1.22635 0.95621 0.94096 0.96384 1.23628 1.06564 0.93106 1.02859 1.23058 0.94021 1.01918 1.01949 0.92566 0.92631 0.92955 0.91367 0.93048 0.91305 0.93680 0.90427 0.94698 0.93760 0.89390 0.88698 0.90015 0.93883 0.90862 0.92286 0.95092 0.93910 0.92799 0.86462 0.87718 0.89148 0.88742 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 2 C -0.09 -0.78 2.87 -90.62 -0.26 -1.04 16 3 C -0.14 -1.20 9.08 37.16 0.34 -0.86 16 4 C 0.06 0.58 4.18 -3.83 -0.02 0.56 16 5 N -0.51 -5.89 4.11 -226.65 -0.93 -6.82 16 6 C 0.07 0.96 2.97 -3.82 -0.01 0.95 16 7 C -0.13 -1.99 4.27 -27.88 -0.12 -2.11 16 8 C 0.50 10.56 7.67 -10.98 -0.08 10.48 16 9 O -0.55 -13.82 15.50 5.55 0.09 -13.73 16 10 N -0.60 -13.00 2.86 -182.95 -0.52 -13.52 16 11 C 0.08 1.34 10.24 59.85 0.61 1.96 16 12 C 0.24 6.51 5.16 -5.20 -0.03 6.49 16 13 C -0.52 -15.12 9.39 -34.44 -0.32 -15.45 16 14 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 17 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.02 0.24 5.82 -67.71 -0.39 -0.16 16 22 C -0.22 -2.53 9.56 -26.73 -0.26 -2.78 16 23 C -0.17 -1.89 9.91 -26.73 -0.26 -2.15 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.58 6.26 -51.93 -0.33 0.25 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.79 6.66 -51.93 -0.35 0.45 16 32 H 0.03 0.36 8.12 -51.92 -0.42 -0.06 16 33 H 0.04 0.68 7.83 -51.93 -0.41 0.27 16 34 H 0.09 1.43 5.41 -51.93 -0.28 1.15 16 35 H 0.09 1.35 7.40 -51.93 -0.38 0.96 16 36 H 0.08 1.06 6.88 -51.93 -0.36 0.70 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.21 8.07 -51.92 -0.42 0.79 16 39 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 40 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 41 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.12 1.09 6.29 -51.93 -0.33 0.76 16 44 H 0.10 1.41 6.02 -51.93 -0.31 1.09 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.10 1.24 7.47 -51.93 -0.39 0.85 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -32.42 369.74 -9.08 -41.49 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.44 Total: -0.66 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -0.56 Total: -3.23 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.72 Total: -46.54 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.42 -9.08 -41.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042557040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.465 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds