Wall clock time and date at job start Tue Mar 31 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46871 * 2 1 4 4 C 1.52995 * 109.47398 * 119.99870 * 2 1 3 5 5 N 1.46902 * 109.47125 * 174.99861 * 4 2 1 6 6 C 1.46900 * 110.99726 * 170.00098 * 5 4 2 7 7 C 1.53000 * 109.47361 * 285.19897 * 6 5 4 8 8 C 1.50698 * 109.46916 * 185.14251 * 7 6 5 9 9 O 1.21286 * 120.00477 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99947 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99585 * 0.02562 * 10 8 7 12 12 C 1.46500 * 120.00064 * 180.02562 * 10 8 7 13 13 C 1.50694 * 109.47222 * 89.99806 * 12 10 8 14 14 H 1.07998 * 119.99977 * 0.02562 * 13 12 10 15 15 C 1.37881 * 119.99906 * 179.97438 * 13 12 10 16 16 N 1.31510 * 119.99685 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99918 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47321 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46946 * 120.00040 * 17 15 13 20 20 H 1.48497 * 109.47384 * 240.00264 * 17 15 13 21 21 C 1.46898 * 110.99980 * 293.95654 * 5 4 2 22 22 C 1.53003 * 117.50049 * 246.64366 * 21 5 4 23 23 C 1.52999 * 59.99945 * 252.51553 * 22 21 5 24 24 H 1.09004 * 109.47187 * 300.00069 * 1 2 3 25 25 H 1.08998 * 109.47314 * 59.99907 * 1 2 3 26 26 H 1.08996 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 240.00650 * 2 1 3 28 28 H 1.08998 * 109.46744 * 60.00451 * 3 2 1 29 29 H 1.09001 * 109.46594 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47227 * 300.00146 * 3 2 1 31 31 H 1.08993 * 109.47456 * 295.00299 * 4 2 1 32 32 H 1.09008 * 109.46808 * 54.99944 * 4 2 1 33 33 H 1.09005 * 109.46926 * 45.20079 * 6 5 4 34 34 H 1.09005 * 109.46924 * 165.19252 * 6 5 4 35 35 H 1.08998 * 109.46814 * 305.14270 * 7 6 5 36 36 H 1.09003 * 109.46740 * 65.14297 * 7 6 5 37 37 H 1.09001 * 109.47276 * 89.99984 * 11 10 8 38 38 H 1.09008 * 109.46545 * 210.00317 * 11 10 8 39 39 H 1.09001 * 109.47208 * 329.99745 * 11 10 8 40 40 H 1.08999 * 109.46827 * 209.99917 * 12 10 8 41 41 H 1.09001 * 109.46617 * 329.99448 * 12 10 8 42 42 H 0.97001 * 120.00092 * 179.97438 * 16 15 13 43 43 H 1.08996 * 115.55016 * 32.35856 * 21 5 4 44 44 H 1.09001 * 117.49281 * 0.02562 * 22 21 5 45 45 H 1.08994 * 117.49746 * 145.02079 * 22 21 5 46 46 H 1.08996 * 117.49327 * 252.50867 * 23 22 21 47 47 H 1.08995 * 117.52021 * 107.48421 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5041 -0.8266 1.1903 6 6 4.0499 -1.2965 2.4706 7 6 4.0021 -0.1596 3.4935 8 6 4.6761 -0.6011 4.7670 9 8 5.1487 -1.7151 4.8484 10 7 4.7547 0.2424 5.8152 11 6 4.1843 1.5883 5.7167 12 6 5.4104 -0.1865 7.0531 13 6 6.8764 0.1567 6.9899 14 1 7.2793 0.6458 6.1154 15 6 7.7031 -0.1528 8.0491 16 7 7.2123 -0.7479 9.1142 17 14 9.5205 0.2719 7.9705 18 1 9.8190 0.9317 6.6742 19 1 9.8621 1.1928 9.0843 20 1 10.3249 -0.9704 8.0909 21 6 3.9250 -1.6995 0.0864 22 6 4.6025 -3.0222 0.4505 23 6 5.4277 -1.8772 -0.1401 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.7517 -0.1583 2.1369 32 1 1.6054 -1.7198 1.2951 33 1 3.4563 -2.1361 2.8324 34 1 5.0827 -1.6156 2.3300 35 1 4.5188 0.7121 3.0921 36 1 2.9636 0.0977 3.7023 37 1 3.1451 1.5674 6.0449 38 1 4.7518 2.2705 6.3497 39 1 4.2318 1.9282 4.6822 40 1 4.9541 0.3235 7.9015 41 1 5.2941 -1.2638 7.1713 42 1 7.7939 -0.9660 9.8592 43 1 3.2813 -1.6888 -0.7932 44 1 4.7354 -3.2447 1.5092 45 1 4.4043 -3.8820 -0.1894 46 1 5.7725 -1.9838 -1.1686 47 1 6.1039 -1.3461 0.5297 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042557040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:45 Heat of formation + Delta-G solvation = -34.933554 kcal Electronic energy + Delta-G solvation = -22990.634135 eV Core-core repulsion = 19787.285187 eV Total energy + Delta-G solvation = -3203.348948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.92171 -39.91734 -36.75841 -36.61243 -34.86235 -34.47582 -31.56988 -29.60823 -27.83954 -27.37420 -26.60989 -25.29386 -23.87378 -23.15089 -21.68927 -20.14075 -19.82390 -18.71419 -17.94207 -17.62132 -17.10531 -16.63476 -16.45274 -15.87921 -15.74625 -15.15072 -14.88633 -14.53006 -14.29089 -14.04336 -13.77501 -13.56405 -13.44567 -13.36225 -13.16805 -13.05956 -12.93409 -12.80367 -12.66345 -12.51740 -12.24639 -12.21923 -12.09997 -11.82923 -11.68493 -11.64467 -11.51875 -11.27892 -11.10031 -10.66447 -10.61405 -9.42367 -9.11749 -8.23954 -6.38989 1.35211 1.37642 1.49704 1.83219 2.25683 2.39764 2.74568 3.05341 3.11747 3.70845 3.86873 3.93103 3.96781 4.06550 4.08017 4.16310 4.27926 4.38927 4.43990 4.55693 4.62881 4.71971 4.77257 4.77767 4.84228 4.85488 4.94087 4.95715 4.99830 5.01581 5.07057 5.10262 5.17034 5.21546 5.22268 5.23508 5.36595 5.53514 5.55351 5.63968 5.83391 6.01519 6.04952 6.18367 6.68515 6.78631 7.26861 7.47736 8.83336 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021327 B = 0.003710 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.552881 B = 7546.262609 C = 8186.717447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.136 4.136 4 C 0.055 3.945 5 N -0.502 5.502 6 C 0.077 3.923 7 C -0.113 4.113 8 C 0.494 3.506 9 O -0.602 6.602 10 N -0.611 5.611 11 C 0.078 3.922 12 C 0.258 3.742 13 C -0.543 4.543 14 H 0.053 0.947 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.969 3.031 18 H -0.267 1.267 19 H -0.267 1.267 20 H -0.281 1.281 21 C 0.027 3.973 22 C -0.230 4.230 23 C -0.172 4.172 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.032 0.968 33 H 0.028 0.972 34 H 0.063 0.937 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.023 0.977 41 H -0.004 1.004 42 H 0.267 0.733 43 H 0.141 0.859 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.117 0.883 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.169 4.714 -20.806 25.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 C -0.193 4.193 4 C -0.072 4.072 5 N -0.223 5.223 6 C -0.051 4.051 7 C -0.153 4.153 8 C 0.283 3.717 9 O -0.484 6.484 10 N -0.342 5.342 11 C -0.064 4.064 12 C 0.137 3.863 13 C -0.581 4.581 14 H 0.071 0.929 15 C -0.193 4.193 16 N -0.569 5.569 17 Si 0.793 3.207 18 H -0.191 1.191 19 H -0.192 1.192 20 H -0.207 1.207 21 C -0.082 4.082 22 C -0.269 4.269 23 C -0.210 4.210 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.041 0.959 41 H 0.014 0.986 42 H 0.076 0.924 43 H 0.158 0.842 44 H 0.095 0.905 45 H 0.125 0.875 46 H 0.135 0.865 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.728 4.602 -20.643 24.684 hybrid contribution 0.898 -1.064 0.946 1.683 sum -11.830 3.539 -19.697 23.248 Atomic orbital electron populations 1.21807 0.94271 1.01834 1.02391 1.21106 0.95683 0.96947 0.96819 1.21695 1.01430 0.94919 1.01293 1.22349 0.85710 0.99201 0.99932 1.61824 1.10815 1.47833 1.01877 1.21697 1.00008 0.94785 0.88620 1.21518 1.02639 1.00665 0.90450 1.21376 0.79677 0.84551 0.86094 1.90630 1.50712 1.23311 1.83710 1.48200 1.56081 1.15468 1.14459 1.21940 0.98549 0.81943 1.03925 1.18748 0.91760 0.94118 0.81695 1.21739 0.94736 1.39357 1.02305 0.92915 1.25885 1.03918 0.94685 0.94786 1.70058 1.37624 1.42136 1.07051 0.85347 0.78750 0.78059 0.78531 1.19124 1.19246 1.20732 1.22811 0.95751 0.93135 0.96524 1.23575 1.07547 0.94171 1.01594 1.23086 0.93967 1.01325 1.02599 0.92474 0.91700 0.92804 0.91039 0.92933 0.92667 0.92713 0.90241 0.94968 0.95364 0.91874 0.86885 0.86903 0.91059 0.91624 0.88755 0.95853 0.98578 0.92374 0.84170 0.90544 0.87452 0.86514 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.19 71.98 0.66 -1.03 16 2 C -0.09 -1.22 2.87 -10.79 -0.03 -1.25 16 3 C -0.14 -1.96 9.08 71.98 0.65 -1.31 16 4 C 0.06 0.99 4.18 86.30 0.36 1.35 16 5 N -0.50 -10.96 4.11 -870.97 -3.58 -14.54 16 6 C 0.08 2.23 2.97 86.30 0.26 2.48 16 7 C -0.11 -3.24 4.27 29.85 0.13 -3.11 16 8 C 0.49 21.03 7.67 87.66 0.67 21.70 16 9 O -0.60 -32.04 15.50 -3.05 -0.05 -32.08 16 10 N -0.61 -26.54 2.86 -851.12 -2.43 -28.97 16 11 C 0.08 2.36 10.24 127.77 1.31 3.67 16 12 C 0.26 14.32 5.16 85.63 0.44 14.77 16 13 C -0.54 -32.06 9.39 25.60 0.24 -31.82 16 14 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 15 C 0.01 0.36 5.46 84.66 0.46 0.82 16 16 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 17 Si 0.97 45.70 29.54 68.60 2.03 47.72 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 C 0.03 0.54 5.82 44.92 0.26 0.80 16 22 C -0.23 -5.17 9.56 30.59 0.29 -4.88 16 23 C -0.17 -3.64 9.91 30.59 0.30 -3.34 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.97 6.26 -2.39 -0.01 0.96 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.96 7.75 -2.39 -0.02 0.94 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 31 H 0.08 1.40 6.66 -2.39 -0.02 1.39 16 32 H 0.03 0.61 8.12 -2.38 -0.02 0.59 16 33 H 0.03 0.89 7.83 -2.38 -0.02 0.87 16 34 H 0.06 2.15 5.41 -2.38 -0.01 2.13 16 35 H 0.11 2.91 7.40 -2.39 -0.02 2.89 16 36 H 0.11 2.58 6.88 -2.39 -0.02 2.57 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 2.09 8.07 -2.38 -0.02 2.07 16 39 H 0.09 2.17 6.44 -2.39 -0.02 2.16 16 40 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 41 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.14 2.19 6.29 -2.39 -0.02 2.18 16 44 H 0.08 2.18 6.02 -2.39 -0.01 2.16 16 45 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.08 1.99 7.47 -2.39 -0.02 1.97 16 Total: -1.00 -73.73 369.74 3.18 -70.55 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.92 Total: 15.33 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 6.01 Total: -1.15 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -5.73 Total: -100.36 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.05 Total: -32.08 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -73.73 3.18 -70.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042557040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.615 kcal (2) G-P(sol) polarization free energy of solvation -73.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds