Wall clock time and date at job start Tue Mar 31 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47173 * 2 1 4 4 C 1.52995 * 109.47173 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47173 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47130 * 180.02562 * 5 4 3 7 7 C 1.34775 * 119.99759 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99858 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00073 * 179.97438 * 7 6 5 10 10 C 1.53112 * 109.52531 * 180.02562 * 9 7 6 11 11 C 1.53031 * 109.28065 * 177.56146 * 10 9 7 12 12 N 1.46850 * 109.52191 * 300.81936 * 11 10 9 13 13 C 1.46904 * 111.00104 * 185.83867 * 12 11 10 14 14 C 1.50697 * 109.46891 * 170.00174 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72239 * 14 13 12 16 16 C 1.37885 * 119.99686 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48490 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 120.00108 * 18 16 14 21 21 H 1.48504 * 109.46636 * 239.99667 * 18 16 14 22 22 C 1.46846 * 111.19767 * 61.74317 * 12 11 10 23 23 C 1.53043 * 109.52316 * 298.25581 * 22 12 11 24 24 H 1.09008 * 109.47331 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47118 * 299.99555 * 1 2 3 26 26 H 1.09006 * 109.47473 * 60.00141 * 1 2 3 27 27 H 1.09004 * 109.47028 * 240.00104 * 2 1 3 28 28 H 1.09000 * 109.47035 * 119.99930 * 2 1 3 29 29 H 1.09004 * 109.47058 * 60.00122 * 3 2 1 30 30 H 1.09000 * 109.47083 * 299.99901 * 3 2 1 31 31 H 1.09004 * 109.47028 * 60.00104 * 4 3 2 32 32 H 1.08992 * 109.47325 * 299.99992 * 4 3 2 33 33 H 1.09004 * 109.47058 * 60.00122 * 5 4 3 34 34 H 1.09000 * 109.47083 * 299.99901 * 5 4 3 35 35 H 0.96996 * 119.99788 * 0.02562 * 6 5 4 36 36 H 1.08998 * 109.51635 * 59.87395 * 9 7 6 37 37 H 1.09007 * 109.50366 * 57.61598 * 10 9 7 38 38 H 1.09001 * 109.50045 * 297.50269 * 10 9 7 39 39 H 1.08997 * 109.46601 * 180.80276 * 11 10 9 40 40 H 1.09006 * 109.45698 * 60.82720 * 11 10 9 41 41 H 1.08998 * 109.47046 * 49.99675 * 13 12 11 42 42 H 1.09001 * 109.47014 * 289.99875 * 13 12 11 43 43 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 44 44 H 1.08996 * 109.46465 * 58.27194 * 22 12 11 45 45 H 1.08998 * 109.46421 * 178.24606 * 22 12 11 46 46 H 1.08999 * 109.50530 * 299.24210 * 23 22 12 47 47 H 1.08996 * 109.50505 * 179.12322 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 -0.0013 6 7 5.5450 2.8850 -0.0025 7 6 6.2188 4.0522 -0.0038 8 8 5.6123 5.1025 -0.0034 9 6 7.7259 4.0523 -0.0045 10 6 8.2375 5.4954 -0.0052 11 6 9.7666 5.4894 0.0555 12 7 10.2066 4.7958 1.2728 13 6 11.6636 4.8907 1.4354 14 6 12.0501 4.3890 2.8028 15 1 11.2892 4.0392 3.4847 16 6 13.3747 4.3824 3.1857 17 7 14.3013 4.8089 2.3555 18 14 13.8531 3.7677 4.8835 19 1 12.6338 3.3471 5.6194 20 1 14.7747 2.6111 4.7497 21 1 14.5311 4.8569 5.6313 22 6 9.7673 3.3946 1.2738 23 6 8.2381 3.3380 1.2494 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9329 0.9288 -0.8909 32 1 3.9336 0.9286 0.8890 33 1 3.7170 3.3991 0.8887 34 1 3.7162 3.3986 -0.8913 35 1 6.0299 2.0450 -0.0032 36 1 8.0896 3.5359 -0.8928 37 1 7.8408 6.0226 0.8625 38 1 7.9115 5.9965 -0.9167 39 1 10.1336 6.5156 0.0695 40 1 10.1628 4.9739 -0.8195 41 1 11.9741 5.9301 1.3284 42 1 12.1544 4.2847 0.6739 43 1 15.2331 4.8039 2.6247 44 1 10.1635 2.8891 0.3931 45 1 10.1346 2.8994 2.1726 46 1 7.8415 3.8313 2.1367 47 1 7.9126 2.2979 1.2344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045945005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:08 Heat of formation + Delta-G solvation = -73.149371 kcal Electronic energy + Delta-G solvation = -22066.825754 eV Core-core repulsion = 18861.819644 eV Total energy + Delta-G solvation = -3205.006110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.05954 -37.83351 -36.71236 -34.57313 -33.64370 -32.06714 -31.05221 -30.27115 -27.44874 -26.25252 -24.27522 -22.58946 -22.28802 -21.63672 -21.36077 -20.20297 -19.18757 -17.00113 -16.36907 -16.31287 -16.06363 -15.34345 -14.98390 -14.34768 -14.27355 -14.21139 -13.93044 -13.76171 -13.46776 -13.29496 -12.89812 -12.76194 -12.36626 -12.06700 -11.99287 -11.79858 -11.53239 -11.43827 -11.39401 -11.18424 -11.02687 -10.93770 -10.76815 -10.64165 -10.48391 -10.35317 -10.08871 -9.82661 -9.46525 -9.15266 -9.11370 -8.43557 -7.20561 -6.02435 -4.03653 2.72299 3.13516 3.30866 3.38455 3.43146 4.35938 4.42637 4.49265 4.60357 4.76974 4.82378 4.88211 4.93370 5.08232 5.15443 5.18540 5.26705 5.32420 5.33351 5.45149 5.47995 5.55595 5.63589 5.66997 5.69337 5.79474 5.86969 5.90793 5.95179 5.98856 6.02671 6.14857 6.23727 6.35783 6.46202 6.55086 6.67033 6.74156 7.32659 7.36045 7.45133 7.81651 8.11407 8.22456 8.26355 8.57079 9.04549 9.60612 11.08436 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025522 B = 0.002664 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.839044 B =10509.715435 C =11336.102913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.132 4.132 5 C 0.118 3.882 6 N -0.736 5.736 7 C 0.520 3.480 8 O -0.541 6.541 9 C -0.106 4.106 10 C -0.092 4.092 11 C 0.055 3.945 12 N -0.537 5.537 13 C 0.192 3.808 14 C -0.506 4.506 15 H 0.064 0.936 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.066 3.934 23 C -0.105 4.105 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.400 0.600 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.021 0.979 41 H 0.031 0.969 42 H -0.009 1.009 43 H 0.260 0.740 44 H 0.021 0.979 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.274 -9.462 -6.913 25.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.170 4.170 5 C -0.006 4.006 6 N -0.389 5.389 7 C 0.308 3.692 8 O -0.418 6.418 9 C -0.127 4.127 10 C -0.130 4.130 11 C -0.074 4.074 12 N -0.262 5.262 13 C 0.067 3.933 14 C -0.545 4.545 15 H 0.082 0.918 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.210 1.210 22 C -0.062 4.062 23 C -0.143 4.143 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.235 0.765 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.049 0.951 42 H 0.009 0.991 43 H 0.070 0.930 44 H 0.039 0.961 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.746 -8.423 -6.525 25.117 hybrid contribution 1.025 -1.151 0.134 1.547 sum -21.720 -9.574 -6.391 24.582 Atomic orbital electron populations 1.21781 0.95837 1.01617 1.01888 1.21527 0.95928 0.96666 1.02118 1.21532 0.94297 0.97139 1.02588 1.21819 0.96360 0.95961 1.02859 1.21330 0.80093 0.96876 1.02253 1.46073 1.07040 1.09051 1.76697 1.20912 0.90420 0.83190 0.74719 1.90674 1.70592 1.31419 1.49066 1.21437 0.90156 1.00326 1.00824 1.21399 0.95423 0.93521 1.02703 1.22040 0.93880 0.99561 0.91898 1.62030 1.17403 1.12414 1.34372 1.19720 0.79908 0.97114 0.96543 1.21211 0.92059 1.41600 0.99609 0.91796 1.25006 0.96550 0.95685 0.97491 1.69973 1.00756 1.47508 1.35581 0.86448 0.78444 0.78362 0.84202 1.19673 1.21158 1.21033 1.21915 0.92152 0.90888 1.01271 1.21638 0.97572 0.98643 0.96480 0.92790 0.92685 0.92740 0.92002 0.91927 0.91588 0.91678 0.91305 0.91153 0.91635 0.91768 0.76545 0.89174 0.90549 0.91830 0.91006 0.96109 0.95124 0.99143 0.93006 0.96130 0.89448 0.90829 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.15 0.37 -0.43 16 2 C -0.12 -0.69 5.93 -26.73 -0.16 -0.84 16 3 C -0.12 -0.70 5.21 -26.73 -0.14 -0.84 16 4 C -0.13 -0.85 5.33 -26.73 -0.14 -0.99 16 5 C 0.12 1.09 5.67 -4.04 -0.02 1.07 16 6 N -0.74 -7.62 5.46 -60.29 -0.33 -7.95 16 7 C 0.52 7.28 7.16 -10.98 -0.08 7.21 16 8 O -0.54 -9.56 15.98 5.55 0.09 -9.47 16 9 C -0.11 -1.48 2.59 -91.65 -0.24 -1.72 16 10 C -0.09 -1.48 4.68 -26.66 -0.12 -1.61 16 11 C 0.05 1.01 5.46 -3.84 -0.02 0.99 16 12 N -0.54 -11.55 4.65 -236.11 -1.10 -12.65 16 13 C 0.19 5.01 4.72 -4.98 -0.02 4.98 16 14 C -0.51 -14.14 8.42 -34.44 -0.29 -14.43 16 15 H 0.06 1.77 7.13 -52.49 -0.37 1.39 16 16 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 18 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.07 1.23 5.30 -3.83 -0.02 1.21 16 23 C -0.11 -1.53 5.26 -26.65 -0.14 -1.67 16 24 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 3.18 7.96 -40.82 -0.33 2.85 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.33 8.02 -51.93 -0.42 0.91 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.03 0.86 7.99 -51.93 -0.41 0.44 16 42 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 1.76 6.70 -51.93 -0.35 1.42 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -31.92 371.55 -10.17 -42.08 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -9.02 Total: -2.56 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.13 Total: -5.65 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.69 Total: -46.54 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.92 -10.17 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045945005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.068 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds