Wall clock time and date at job start Tue Mar 31 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47173 * 2 1 4 4 C 1.52995 * 109.47173 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47173 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47130 * 180.02562 * 5 4 3 7 7 C 1.34775 * 119.99759 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99858 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00073 * 179.97438 * 7 6 5 10 10 C 1.53112 * 109.52531 * 180.02562 * 9 7 6 11 11 C 1.53031 * 109.28065 * 177.56146 * 10 9 7 12 12 N 1.46850 * 109.52191 * 300.81936 * 11 10 9 13 13 C 1.46904 * 111.00104 * 185.83867 * 12 11 10 14 14 C 1.50697 * 109.46891 * 170.00174 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72239 * 14 13 12 16 16 C 1.37885 * 119.99686 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48490 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 120.00108 * 18 16 14 21 21 H 1.48504 * 109.46636 * 239.99667 * 18 16 14 22 22 C 1.46846 * 111.19767 * 61.74317 * 12 11 10 23 23 C 1.53043 * 109.52316 * 298.25581 * 22 12 11 24 24 H 1.09008 * 109.47331 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47118 * 299.99555 * 1 2 3 26 26 H 1.09006 * 109.47473 * 60.00141 * 1 2 3 27 27 H 1.09004 * 109.47028 * 240.00104 * 2 1 3 28 28 H 1.09000 * 109.47035 * 119.99930 * 2 1 3 29 29 H 1.09004 * 109.47058 * 60.00122 * 3 2 1 30 30 H 1.09000 * 109.47083 * 299.99901 * 3 2 1 31 31 H 1.09004 * 109.47028 * 60.00104 * 4 3 2 32 32 H 1.08992 * 109.47325 * 299.99992 * 4 3 2 33 33 H 1.09004 * 109.47058 * 60.00122 * 5 4 3 34 34 H 1.09000 * 109.47083 * 299.99901 * 5 4 3 35 35 H 0.96996 * 119.99788 * 0.02562 * 6 5 4 36 36 H 1.08998 * 109.51635 * 59.87395 * 9 7 6 37 37 H 1.09007 * 109.50366 * 57.61598 * 10 9 7 38 38 H 1.09001 * 109.50045 * 297.50269 * 10 9 7 39 39 H 1.08997 * 109.46601 * 180.80276 * 11 10 9 40 40 H 1.09006 * 109.45698 * 60.82720 * 11 10 9 41 41 H 1.08998 * 109.47046 * 49.99675 * 13 12 11 42 42 H 1.09001 * 109.47014 * 289.99875 * 13 12 11 43 43 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 44 44 H 1.08996 * 109.46465 * 58.27194 * 22 12 11 45 45 H 1.08998 * 109.46421 * 178.24606 * 22 12 11 46 46 H 1.08999 * 109.50530 * 299.24210 * 23 22 12 47 47 H 1.08996 * 109.50505 * 179.12322 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 -0.0013 6 7 5.5450 2.8850 -0.0025 7 6 6.2188 4.0522 -0.0038 8 8 5.6123 5.1025 -0.0034 9 6 7.7259 4.0523 -0.0045 10 6 8.2375 5.4954 -0.0052 11 6 9.7666 5.4894 0.0555 12 7 10.2066 4.7958 1.2728 13 6 11.6636 4.8907 1.4354 14 6 12.0501 4.3890 2.8028 15 1 11.2892 4.0392 3.4847 16 6 13.3747 4.3824 3.1857 17 7 14.3013 4.8089 2.3555 18 14 13.8531 3.7677 4.8835 19 1 12.6338 3.3471 5.6194 20 1 14.7747 2.6111 4.7497 21 1 14.5311 4.8569 5.6313 22 6 9.7673 3.3946 1.2738 23 6 8.2381 3.3380 1.2494 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9329 0.9288 -0.8909 32 1 3.9336 0.9286 0.8890 33 1 3.7170 3.3991 0.8887 34 1 3.7162 3.3986 -0.8913 35 1 6.0299 2.0450 -0.0032 36 1 8.0896 3.5359 -0.8928 37 1 7.8408 6.0226 0.8625 38 1 7.9115 5.9965 -0.9167 39 1 10.1336 6.5156 0.0695 40 1 10.1628 4.9739 -0.8195 41 1 11.9741 5.9301 1.3284 42 1 12.1544 4.2847 0.6739 43 1 15.2331 4.8039 2.6247 44 1 10.1635 2.8891 0.3931 45 1 10.1346 2.8994 2.1726 46 1 7.8415 3.8313 2.1367 47 1 7.9126 2.2979 1.2344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045945005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:07 Heat of formation + Delta-G solvation = -93.883562 kcal Electronic energy + Delta-G solvation = -22067.724856 eV Core-core repulsion = 18861.819644 eV Total energy + Delta-G solvation = -3205.905212 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.21406 -39.24532 -37.40563 -35.47512 -35.33001 -33.83118 -31.97248 -31.48710 -29.18840 -27.24959 -25.71519 -24.00170 -23.44712 -22.70393 -22.10227 -21.37226 -20.47667 -18.44128 -18.10114 -17.16050 -16.97491 -16.75892 -16.21152 -15.85706 -15.71142 -15.21493 -15.10647 -14.71857 -14.56839 -14.28873 -14.07458 -13.89917 -13.79781 -13.44790 -13.14294 -13.04524 -12.82161 -12.58585 -12.52025 -12.29567 -12.08326 -12.02921 -11.94443 -11.93007 -11.67932 -11.60508 -11.44700 -11.38178 -11.13858 -10.64799 -10.60808 -10.07726 -8.96584 -8.19407 -6.29380 1.41596 1.43015 1.56270 1.62504 2.21128 2.41302 3.12857 3.31090 3.64737 3.82071 3.82738 3.91084 4.01391 4.16616 4.30235 4.31314 4.33167 4.42966 4.46487 4.60816 4.62175 4.71617 4.72611 4.80601 4.84860 4.86403 4.95987 5.02084 5.03052 5.12090 5.14450 5.15878 5.21600 5.21932 5.31129 5.34009 5.41176 5.44867 5.50422 5.52586 5.67233 6.07450 6.39165 6.55652 6.67974 6.87734 7.25912 7.40415 8.91835 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025522 B = 0.002664 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.839044 B =10509.715435 C =11336.102913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.121 4.121 5 C 0.117 3.883 6 N -0.718 5.718 7 C 0.523 3.477 8 O -0.583 6.583 9 C -0.101 4.101 10 C -0.084 4.084 11 C 0.056 3.944 12 N -0.549 5.549 13 C 0.206 3.794 14 C -0.521 4.521 15 H 0.064 0.936 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.281 1.281 22 C 0.065 3.935 23 C -0.092 4.092 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.416 0.584 36 H 0.115 0.885 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.029 0.971 41 H 0.000 1.000 42 H -0.035 1.035 43 H 0.264 0.736 44 H 0.026 0.974 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.603 -11.601 -6.676 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.159 4.159 5 C -0.006 4.006 6 N -0.370 5.370 7 C 0.310 3.690 8 O -0.463 6.463 9 C -0.122 4.122 10 C -0.122 4.122 11 C -0.072 4.072 12 N -0.274 5.274 13 C 0.080 3.920 14 C -0.559 4.559 15 H 0.082 0.918 16 C -0.199 4.199 17 N -0.576 5.576 18 Si 0.795 3.205 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.207 1.207 22 C -0.063 4.063 23 C -0.130 4.130 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.253 0.747 36 H 0.133 0.867 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.018 0.982 42 H -0.017 1.017 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.102 -10.611 -6.295 27.077 hybrid contribution 1.405 -0.474 0.007 1.483 sum -22.697 -11.085 -6.288 26.031 Atomic orbital electron populations 1.21796 0.95797 1.01886 1.01820 1.21513 0.95987 0.96189 1.02390 1.21523 0.94039 0.97547 1.02393 1.21748 0.96442 0.93928 1.03773 1.21411 0.79158 0.98695 1.01338 1.45951 1.07662 1.08657 1.74779 1.20788 0.90199 0.83513 0.74478 1.90668 1.71185 1.33085 1.51330 1.21365 0.90476 0.98790 1.01545 1.21268 0.93205 0.95340 1.02384 1.22068 0.95614 0.98694 0.90856 1.61951 1.14284 1.14797 1.36418 1.19370 0.82769 0.94514 0.95323 1.21496 0.92424 1.41658 1.00314 0.91790 1.25941 0.96485 0.95708 1.01726 1.70099 1.01215 1.48510 1.37745 0.85313 0.78338 0.77879 0.78954 1.18643 1.20247 1.20707 1.21957 0.94999 0.88804 1.00570 1.21535 0.94138 1.01146 0.96166 0.92371 0.92869 0.92742 0.91588 0.91764 0.92001 0.91782 0.90148 0.90394 0.92878 0.92484 0.74732 0.86742 0.92534 0.90650 0.92086 0.95324 0.98162 1.01687 0.92731 0.95555 0.91351 0.92248 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.91 71.98 0.71 -0.67 16 2 C -0.12 -1.10 5.93 30.59 0.18 -0.91 16 3 C -0.12 -1.17 5.21 30.59 0.16 -1.01 16 4 C -0.12 -1.22 5.33 30.59 0.16 -1.06 16 5 C 0.12 1.93 5.67 86.38 0.49 2.42 16 6 N -0.72 -12.84 5.46 -463.04 -2.53 -15.37 16 7 C 0.52 13.58 7.16 87.66 0.63 14.20 16 8 O -0.58 -20.08 15.98 -3.04 -0.05 -20.13 16 9 C -0.10 -2.58 2.59 -11.46 -0.03 -2.61 16 10 C -0.08 -2.64 4.68 30.64 0.14 -2.49 16 11 C 0.06 2.07 5.46 86.32 0.47 2.54 16 12 N -0.55 -23.99 4.65 -900.92 -4.19 -28.17 16 13 C 0.21 11.14 4.72 85.56 0.40 11.55 16 14 C -0.52 -29.57 8.42 25.60 0.22 -29.36 16 15 H 0.06 3.56 7.13 -2.92 -0.02 3.54 16 16 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 17 N -0.94 -56.51 13.29 21.45 0.28 -56.22 16 18 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 C 0.06 2.35 5.30 86.33 0.46 2.81 16 23 C -0.09 -2.46 5.26 30.65 0.16 -2.29 16 24 H 0.06 0.46 8.14 -2.38 -0.02 0.45 16 25 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.42 4.93 7.96 -92.71 -0.74 4.19 16 36 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.06 2.01 8.04 -2.38 -0.02 1.99 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 2.34 8.02 -2.39 -0.02 2.32 16 40 H 0.03 1.01 8.14 -2.38 -0.02 1.00 16 41 H 0.00 0.02 7.99 -2.39 -0.02 0.00 16 42 H -0.03 -2.00 8.12 -2.39 -0.02 -2.01 16 43 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 2.74 6.70 -2.39 -0.02 2.72 16 46 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.10 1.91 7.66 -2.39 -0.02 1.89 16 Total: -1.00 -70.36 371.55 0.34 -70.03 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.17 Total: 10.07 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 4.62 Total: -6.48 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -6.43 Total: -99.76 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -70.36 0.34 -70.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045945005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.855 kcal (2) G-P(sol) polarization free energy of solvation -70.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds