Wall clock time and date at job start Tue Mar 31 2020 06:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47391 * 2 1 4 4 C 1.52997 * 109.47002 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47064 * 179.97438 * 4 3 2 6 6 C 1.46494 * 120.00220 * 270.00319 * 5 4 3 7 7 C 1.34778 * 119.99908 * 89.99619 * 5 4 3 8 8 O 1.21279 * 119.99973 * 0.02562 * 7 5 4 9 9 C 1.50702 * 120.00221 * 180.02562 * 7 5 4 10 10 C 1.53112 * 109.52571 * 180.02562 * 9 7 5 11 11 C 1.53031 * 109.28065 * 177.62499 * 10 9 7 12 12 N 1.46850 * 109.52191 * 300.81936 * 11 10 9 13 13 C 1.46904 * 111.00104 * 185.83867 * 12 11 10 14 14 C 1.50697 * 109.46891 * 170.00174 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72239 * 14 13 12 16 16 C 1.37885 * 119.99686 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 C 1.46846 * 111.19767 * 61.74317 * 12 11 10 23 23 C 1.53043 * 109.52316 * 298.25581 * 22 12 11 24 24 H 1.08996 * 109.47211 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47296 * 300.00661 * 1 2 3 26 26 H 1.09010 * 109.46866 * 60.00048 * 1 2 3 27 27 H 1.08998 * 109.47016 * 239.99700 * 2 1 3 28 28 H 1.09010 * 109.46866 * 119.99952 * 2 1 3 29 29 H 1.09004 * 109.46768 * 59.99418 * 3 2 1 30 30 H 1.08998 * 109.46700 * 300.00028 * 3 2 1 31 31 H 1.08996 * 109.47263 * 60.00402 * 4 3 2 32 32 H 1.08998 * 109.46974 * 299.99807 * 4 3 2 33 33 H 1.09003 * 109.46887 * 270.00252 * 6 5 4 34 34 H 1.08999 * 109.46900 * 29.99746 * 6 5 4 35 35 H 1.08998 * 109.47517 * 149.99394 * 6 5 4 36 36 H 1.09000 * 109.51869 * 59.87458 * 9 7 5 37 37 H 1.09007 * 109.50366 * 57.67950 * 10 9 7 38 38 H 1.09001 * 109.50045 * 297.56621 * 10 9 7 39 39 H 1.08997 * 109.46601 * 180.80276 * 11 10 9 40 40 H 1.09006 * 109.45698 * 60.82720 * 11 10 9 41 41 H 1.08998 * 109.47046 * 49.99675 * 13 12 11 42 42 H 1.09001 * 109.47014 * 289.99875 * 13 12 11 43 43 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 44 44 H 1.08996 * 109.46465 * 58.27194 * 22 12 11 45 45 H 1.08998 * 109.46421 * 178.24606 * 22 12 11 46 46 H 1.08999 * 109.50530 * 299.24210 * 23 22 12 47 47 H 1.08996 * 109.50505 * 179.12322 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.3032 3.5135 -1.2689 7 6 4.2826 3.4597 1.1670 8 8 4.0803 2.8884 2.2175 9 6 4.7844 4.8807 1.1664 10 6 4.9550 5.3637 2.6093 11 6 5.5207 6.7856 2.6026 12 7 6.8145 6.7958 1.9079 13 6 7.4523 8.1158 2.0021 14 6 8.8700 8.0256 1.4992 15 1 9.2598 7.0813 1.1492 16 6 9.6715 9.1476 1.4918 17 7 9.1969 10.2975 1.9185 18 14 11.4312 9.0342 0.8756 19 1 11.4631 9.3059 -0.5839 20 1 12.2691 10.0351 1.5839 21 1 11.9605 7.6716 1.1372 22 6 6.6681 6.3809 0.5069 23 6 6.1367 4.9468 0.4510 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8898 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9287 0.8909 33 1 5.3327 3.3419 -1.5831 34 1 3.6226 3.1290 -2.0286 35 1 4.1361 4.5828 -1.1393 36 1 4.0680 5.5197 0.6503 37 1 5.6420 4.7012 3.1361 38 1 3.9875 5.3593 3.1113 39 1 5.6568 7.1272 3.6287 40 1 4.8268 7.4500 2.0876 41 1 7.4555 8.4443 3.0414 42 1 6.8968 8.8318 1.3964 43 1 9.7606 11.0869 1.9129 44 1 5.9688 7.0472 0.0019 45 1 7.6375 6.4284 0.0109 46 1 6.8421 4.2778 0.9438 47 1 6.0134 4.6446 -0.5889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049752217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:00 Heat of formation + Delta-G solvation = -51.908528 kcal Electronic energy + Delta-G solvation = -22875.859498 eV Core-core repulsion = 19671.774461 eV Total energy + Delta-G solvation = -3204.085038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.34886 -37.85472 -36.37171 -34.75480 -33.56592 -31.99491 -30.44256 -29.51244 -27.30844 -26.74578 -24.91116 -23.30546 -22.56823 -21.53640 -21.17659 -19.57312 -18.93931 -17.02756 -16.34826 -16.19001 -15.56800 -15.52600 -15.07235 -14.32751 -14.21258 -14.07212 -13.85234 -13.40674 -13.30681 -13.13275 -12.97331 -12.72143 -12.48964 -12.30276 -11.96188 -11.69446 -11.63961 -11.49133 -11.37217 -11.34797 -11.00792 -10.82907 -10.75221 -10.64979 -10.45589 -10.31980 -10.07419 -9.80449 -9.41149 -9.13032 -8.75142 -8.43193 -7.20095 -6.02104 -4.03396 2.69689 2.92570 3.31541 3.38133 3.42682 4.42689 4.48359 4.61182 4.69761 4.80351 4.87829 4.93863 5.00244 5.07989 5.17728 5.21387 5.31016 5.33571 5.39969 5.48191 5.50434 5.51837 5.57561 5.68167 5.70711 5.84088 5.88357 5.95744 6.00152 6.04153 6.05744 6.14688 6.24031 6.42008 6.47323 6.56118 6.67255 6.74291 7.30138 7.33118 7.36309 7.81675 8.11823 8.21076 8.23856 8.57483 9.04510 9.60804 11.08743 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038194 B = 0.003029 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.926521 B = 9240.733025 C = 9618.798910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.134 4.134 4 C 0.114 3.886 5 N -0.621 5.621 6 C 0.076 3.924 7 C 0.522 3.478 8 O -0.539 6.539 9 C -0.104 4.104 10 C -0.092 4.092 11 C 0.056 3.944 12 N -0.537 5.537 13 C 0.193 3.807 14 C -0.507 4.507 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.068 3.932 23 C -0.116 4.116 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.020 0.980 41 H 0.030 0.970 42 H -0.010 1.010 43 H 0.261 0.739 44 H 0.020 0.980 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.724 -16.524 -7.810 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.173 4.173 4 C -0.008 4.008 5 N -0.355 5.355 6 C -0.067 4.067 7 C 0.311 3.689 8 O -0.415 6.415 9 C -0.126 4.126 10 C -0.130 4.130 11 C -0.073 4.073 12 N -0.263 5.263 13 C 0.068 3.932 14 C -0.545 4.545 15 H 0.081 0.919 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.061 4.061 23 C -0.154 4.154 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.038 0.962 41 H 0.048 0.952 42 H 0.008 0.992 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.459 -16.967 -6.980 23.360 hybrid contribution 0.377 0.755 -0.856 1.203 sum -14.082 -16.212 -7.836 22.859 Atomic orbital electron populations 1.21757 0.95762 1.01531 1.01858 1.21450 0.96012 0.96422 1.02095 1.21973 0.95684 0.97153 1.02504 1.21462 0.93770 0.82589 1.03011 1.47892 1.66848 1.14221 1.06550 1.21979 1.01314 0.98182 0.85219 1.20946 0.76230 0.88887 0.82856 1.90660 1.51740 1.68052 1.31042 1.21405 0.98864 0.92124 1.00174 1.21399 1.00975 0.97093 0.93537 1.22031 0.91069 0.94683 0.99527 1.62034 1.19434 1.32338 1.12452 1.19707 0.93775 0.82639 0.97074 1.21170 0.96546 0.95147 1.41661 0.91866 1.25001 0.98678 0.95339 0.95667 1.69963 1.36648 0.99828 1.47403 0.86508 0.84451 0.77884 0.78635 1.20776 1.21279 1.19778 1.21908 1.00739 0.92616 0.90837 1.21894 0.94410 0.99502 0.99596 0.92766 0.92687 0.92846 0.92015 0.91759 0.91513 0.92026 0.90833 0.89931 0.91927 0.91445 0.90445 0.89295 0.90582 0.91899 0.91036 0.96159 0.95169 0.99184 0.92950 0.96215 0.89499 0.90976 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.88 5.93 -26.73 -0.16 -1.04 16 3 C -0.13 -1.17 5.54 -26.73 -0.15 -1.32 16 4 C 0.11 1.10 5.41 -4.04 -0.02 1.08 16 5 N -0.62 -6.89 2.87 -181.58 -0.52 -7.41 16 6 C 0.08 0.62 8.81 59.84 0.53 1.15 16 7 C 0.52 7.50 7.08 -10.98 -0.08 7.42 16 8 O -0.54 -9.51 15.56 5.56 0.09 -9.43 16 9 C -0.10 -1.49 1.78 -91.65 -0.16 -1.65 16 10 C -0.09 -1.49 4.68 -26.66 -0.12 -1.62 16 11 C 0.06 1.03 5.46 -3.84 -0.02 1.01 16 12 N -0.54 -11.60 4.65 -236.11 -1.10 -12.70 16 13 C 0.19 5.03 4.72 -4.98 -0.02 5.01 16 14 C -0.51 -14.15 8.42 -34.44 -0.29 -14.44 16 15 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 18 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.07 1.25 5.30 -3.83 -0.02 1.23 16 23 C -0.12 -1.70 5.00 -26.65 -0.13 -1.84 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.08 0.94 7.42 -51.93 -0.39 0.56 16 33 H 0.06 0.48 7.01 -51.93 -0.36 0.12 16 34 H 0.07 0.41 8.07 -51.93 -0.42 0.00 16 35 H 0.08 0.63 5.99 -51.93 -0.31 0.32 16 36 H 0.09 1.15 7.40 -51.93 -0.38 0.77 16 37 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.33 8.02 -51.93 -0.42 0.92 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.03 0.85 7.99 -51.93 -0.41 0.43 16 42 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 1.75 6.70 -51.93 -0.35 1.40 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.07 0.83 4.64 -51.93 -0.24 0.58 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -31.83 363.19 -9.43 -41.26 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -8.70 Total: -3.54 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.38 Total: -4.23 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.88 Total: -46.06 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.83 -9.43 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049752217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.652 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds