Wall clock time and date at job start Tue Mar 31 2020 06:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47391 * 2 1 4 4 C 1.52997 * 109.47002 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47064 * 179.97438 * 4 3 2 6 6 C 1.46494 * 120.00220 * 270.00319 * 5 4 3 7 7 C 1.34778 * 119.99908 * 89.99619 * 5 4 3 8 8 O 1.21279 * 119.99973 * 0.02562 * 7 5 4 9 9 C 1.50702 * 120.00221 * 180.02562 * 7 5 4 10 10 C 1.53112 * 109.52571 * 180.02562 * 9 7 5 11 11 C 1.53031 * 109.28065 * 177.62499 * 10 9 7 12 12 N 1.46850 * 109.52191 * 300.81936 * 11 10 9 13 13 C 1.46904 * 111.00104 * 185.83867 * 12 11 10 14 14 C 1.50697 * 109.46891 * 170.00174 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72239 * 14 13 12 16 16 C 1.37885 * 119.99686 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 C 1.46846 * 111.19767 * 61.74317 * 12 11 10 23 23 C 1.53043 * 109.52316 * 298.25581 * 22 12 11 24 24 H 1.08996 * 109.47211 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47296 * 300.00661 * 1 2 3 26 26 H 1.09010 * 109.46866 * 60.00048 * 1 2 3 27 27 H 1.08998 * 109.47016 * 239.99700 * 2 1 3 28 28 H 1.09010 * 109.46866 * 119.99952 * 2 1 3 29 29 H 1.09004 * 109.46768 * 59.99418 * 3 2 1 30 30 H 1.08998 * 109.46700 * 300.00028 * 3 2 1 31 31 H 1.08996 * 109.47263 * 60.00402 * 4 3 2 32 32 H 1.08998 * 109.46974 * 299.99807 * 4 3 2 33 33 H 1.09003 * 109.46887 * 270.00252 * 6 5 4 34 34 H 1.08999 * 109.46900 * 29.99746 * 6 5 4 35 35 H 1.08998 * 109.47517 * 149.99394 * 6 5 4 36 36 H 1.09000 * 109.51869 * 59.87458 * 9 7 5 37 37 H 1.09007 * 109.50366 * 57.67950 * 10 9 7 38 38 H 1.09001 * 109.50045 * 297.56621 * 10 9 7 39 39 H 1.08997 * 109.46601 * 180.80276 * 11 10 9 40 40 H 1.09006 * 109.45698 * 60.82720 * 11 10 9 41 41 H 1.08998 * 109.47046 * 49.99675 * 13 12 11 42 42 H 1.09001 * 109.47014 * 289.99875 * 13 12 11 43 43 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 44 44 H 1.08996 * 109.46465 * 58.27194 * 22 12 11 45 45 H 1.08998 * 109.46421 * 178.24606 * 22 12 11 46 46 H 1.08999 * 109.50530 * 299.24210 * 23 22 12 47 47 H 1.08996 * 109.50505 * 179.12322 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.3032 3.5135 -1.2689 7 6 4.2826 3.4597 1.1670 8 8 4.0803 2.8884 2.2175 9 6 4.7844 4.8807 1.1664 10 6 4.9550 5.3637 2.6093 11 6 5.5207 6.7856 2.6026 12 7 6.8145 6.7958 1.9079 13 6 7.4523 8.1158 2.0021 14 6 8.8700 8.0256 1.4992 15 1 9.2598 7.0813 1.1492 16 6 9.6715 9.1476 1.4918 17 7 9.1969 10.2975 1.9185 18 14 11.4312 9.0342 0.8756 19 1 11.4631 9.3059 -0.5839 20 1 12.2691 10.0351 1.5839 21 1 11.9605 7.6716 1.1372 22 6 6.6681 6.3809 0.5069 23 6 6.1367 4.9468 0.4510 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8898 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9287 0.8909 33 1 5.3327 3.3419 -1.5831 34 1 3.6226 3.1290 -2.0286 35 1 4.1361 4.5828 -1.1393 36 1 4.0680 5.5197 0.6503 37 1 5.6420 4.7012 3.1361 38 1 3.9875 5.3593 3.1113 39 1 5.6568 7.1272 3.6287 40 1 4.8268 7.4500 2.0876 41 1 7.4555 8.4443 3.0414 42 1 6.8968 8.8318 1.3964 43 1 9.7606 11.0869 1.9129 44 1 5.9688 7.0472 0.0019 45 1 7.6375 6.4284 0.0109 46 1 6.8421 4.2778 0.9438 47 1 6.0134 4.6446 -0.5889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049752217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:59 Heat of formation + Delta-G solvation = -71.690119 kcal Electronic energy + Delta-G solvation = -22876.717292 eV Core-core repulsion = 19671.774461 eV Total energy + Delta-G solvation = -3204.942832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.46488 -39.29116 -37.29491 -35.74369 -35.17429 -33.76076 -31.82640 -30.36390 -29.04656 -27.63818 -26.29181 -24.49115 -23.99112 -23.00715 -22.05149 -20.90719 -20.04493 -18.43947 -18.04743 -17.31544 -16.87744 -16.47981 -16.19033 -15.91478 -15.76597 -15.17004 -15.05223 -14.55309 -14.49498 -14.27833 -13.92138 -13.79414 -13.73861 -13.42718 -13.34759 -13.19588 -12.88152 -12.74583 -12.55296 -12.29257 -12.25614 -12.14802 -12.01643 -11.96501 -11.93899 -11.62446 -11.46937 -11.39998 -11.13162 -10.60212 -10.59490 -9.63143 -8.97249 -8.19161 -6.29290 1.41958 1.43981 1.55459 1.59815 2.03795 2.41490 3.13028 3.29955 3.48984 3.75790 3.87449 3.98064 3.99198 4.16930 4.23410 4.28781 4.37705 4.39993 4.44011 4.60783 4.62556 4.64482 4.69454 4.76004 4.79144 4.81996 4.90069 4.93766 4.97294 5.00696 5.06846 5.12709 5.16977 5.20687 5.25221 5.33522 5.35274 5.40782 5.43837 5.62479 5.66978 6.07277 6.35595 6.39243 6.67298 6.87481 7.16690 7.40504 8.91934 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038194 B = 0.003029 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.926521 B = 9240.733025 C = 9618.798910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.111 3.889 5 N -0.614 5.614 6 C 0.065 3.935 7 C 0.520 3.480 8 O -0.581 6.581 9 C -0.099 4.099 10 C -0.083 4.083 11 C 0.057 3.943 12 N -0.550 5.550 13 C 0.208 3.792 14 C -0.522 4.522 15 H 0.064 0.936 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.266 1.266 22 C 0.067 3.933 23 C -0.101 4.101 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.028 0.972 41 H -0.001 1.001 42 H -0.035 1.035 43 H 0.264 0.736 44 H 0.026 0.974 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.947 -18.037 -10.422 25.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.165 4.165 4 C -0.011 4.011 5 N -0.346 5.346 6 C -0.077 4.077 7 C 0.309 3.691 8 O -0.461 6.461 9 C -0.121 4.121 10 C -0.121 4.121 11 C -0.071 4.071 12 N -0.276 5.276 13 C 0.082 3.918 14 C -0.560 4.560 15 H 0.082 0.918 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.795 3.205 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.061 4.061 23 C -0.139 4.139 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.129 0.871 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.017 0.983 42 H -0.017 1.017 43 H 0.073 0.927 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.702 -18.506 -9.638 25.525 hybrid contribution 0.383 1.210 -0.056 1.271 sum -14.319 -17.296 -9.694 24.457 Atomic orbital electron populations 1.21761 0.95403 1.02087 1.01679 1.21442 0.96312 0.95469 1.02531 1.21890 0.94936 0.97972 1.01715 1.21610 0.94351 0.81752 1.03372 1.47966 1.65304 1.14696 1.06605 1.22258 1.02831 0.98330 0.84255 1.20849 0.76247 0.88684 0.83334 1.90649 1.53887 1.68769 1.32756 1.21327 0.99151 0.92922 0.98652 1.21258 1.00654 0.94884 0.95294 1.22049 0.89906 0.96460 0.98682 1.61956 1.21283 1.29460 1.14858 1.19352 0.93633 0.84369 0.94457 1.21458 0.97475 0.95297 1.41751 0.91817 1.25936 1.03337 0.94839 0.95668 1.70093 1.38446 1.00628 1.48407 0.85368 0.78630 0.78045 0.78487 1.19444 1.20966 1.19068 1.21945 1.00283 0.95128 0.88751 1.21791 0.93945 0.96239 1.01883 0.91880 0.93751 0.92152 0.90246 0.92649 0.94334 0.90658 0.87762 0.92218 0.90838 0.88575 0.90134 0.87127 0.92627 0.90851 0.92096 0.95359 0.98253 1.01697 0.92714 0.95541 0.91274 0.92560 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.12 -1.51 5.93 30.60 0.18 -1.33 16 3 C -0.13 -1.97 5.54 30.59 0.17 -1.80 16 4 C 0.11 1.90 5.41 86.38 0.47 2.37 16 5 N -0.61 -12.04 2.87 -846.78 -2.43 -14.47 16 6 C 0.06 0.79 8.81 127.77 1.13 1.92 16 7 C 0.52 14.28 7.08 87.66 0.62 14.90 16 8 O -0.58 -20.56 15.56 -3.03 -0.05 -20.61 16 9 C -0.10 -2.68 1.78 -11.46 -0.02 -2.70 16 10 C -0.08 -2.68 4.68 30.64 0.14 -2.54 16 11 C 0.06 2.15 5.46 86.32 0.47 2.62 16 12 N -0.55 -24.25 4.65 -900.92 -4.19 -28.44 16 13 C 0.21 11.26 4.72 85.56 0.40 11.67 16 14 C -0.52 -29.65 8.42 25.60 0.22 -29.43 16 15 H 0.06 3.54 7.13 -2.92 -0.02 3.52 16 16 C 0.00 0.00 5.46 84.66 0.46 0.47 16 17 N -0.94 -56.55 13.29 21.45 0.28 -56.26 16 18 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 C 0.07 2.45 5.30 86.33 0.46 2.90 16 23 C -0.10 -2.79 5.00 30.65 0.15 -2.63 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 1.16 8.07 -2.39 -0.02 1.14 16 32 H 0.06 1.32 7.42 -2.39 -0.02 1.30 16 33 H 0.07 0.79 7.01 -2.39 -0.02 0.78 16 34 H 0.10 0.69 8.07 -2.39 -0.02 0.67 16 35 H 0.08 0.98 5.99 -2.39 -0.01 0.96 16 36 H 0.11 2.55 7.40 -2.39 -0.02 2.53 16 37 H 0.05 2.04 8.04 -2.38 -0.02 2.02 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.06 2.37 8.02 -2.39 -0.02 2.35 16 40 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.00 -0.04 7.99 -2.39 -0.02 -0.06 16 42 H -0.03 -2.00 8.12 -2.39 -0.02 -2.02 16 43 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 2.77 6.70 -2.39 -0.02 2.75 16 46 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.11 2.18 4.64 -2.39 -0.01 2.17 16 Total: -1.00 -71.12 363.19 2.11 -69.00 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.91 Total: 9.25 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 5.56 Total: -4.69 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -6.34 Total: -99.17 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.05 Total: -20.61 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -71.12 2.11 -69.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049752217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.686 kcal (2) G-P(sol) polarization free energy of solvation -71.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds